Stock–environment–recruitment models for North Atlantic albacore (Thunnus alalunga)

Different stock–recruitment models were fitted to North Atlantic albacore (Thunnus alalunga) recruitment and spawning stock biomass data. A classical density dependence hypothesis, a recent environmental‐dependence hypothesis and a combination of both were considered. For the latter case, four stock–environment–recruitment models were used: Ricker, Beverton‐Holt, Deriso's General Model (modified to take into account environmental effects) and conditioned Neural Networks. Cross‐validation analysis showed that the modified Deriso model had the best predictive capability. It detected an inverse effect of the North Atlantic Oscillation (NAO) on recruitment, a Ricker‐type behaviour with density dependent overcompensation when environmental conditions are unfavourable and a Beverton–Holt‐type behaviour towards an asymptotic recruitment carrying capacity with favourable environmental conditions. The Neural Network model also detected that under favourable environmental conditions high spawning stock biomass does not necessarily have a depensatory effect on recruitment. Moreover, they suggest that under extremely favourable environmental conditions, albacore recruitment could increase well above the asymptotic carrying capacity predicted by Beverton–Holt‐type models. However, the general decrease in spawning stock biomass in recent years and increasing NAO trends suggest that there is low probability of exceptionally large recruitment in the future and instead there is a danger of recruitment overfishing.     

Falling through the cracks: the fading history of a large iconic predator

Human impact on the oceans predates scientific observation, which for many animal populations has captured only recent changes. Such a limited knowledge can hamper finding optimal management and conservation strategies including setting appropriate recovery targets. Sawfishes are among the most endangered marine vertebrates in the ocean. Historical human impacts have resulted in sawfish extinction in many coastal areas around the world; however, in the Mediterranean Sea, their past presence and possible extinction have been debated for decades. Recently, it was concluded that the region never hosted resident populations because of unsuitable environmental conditions. Through an extensive bibliographic and archival search and an extinction analysis, we reconstructed the history of sawfishes in the Mediterranean Sea. Between 1576 and 1959, there were 48 independent accounts of the occurrence of two sawfish species (Pristis pristis, Pristidae and Pristis pectinata, Pristidae), including 24 documented catches. Sawfishes were mainly recorded in the western Mediterranean, in areas close to large rivers with light human impact. Most of the documented individuals were juveniles, suggesting local parturition. Extinction analyses yielded variable results and were affected by the sparseness of records but suggested that both species went extinct in the Mediterranean Sea in the 1960s–1970s. Our results challenge current assumptions on sawfish ecology and biogeography, offer new options for sawfish conservation in the Atlantic and highlight the importance of historical analyses for reconstructing ecosystem baselines and setting recovery targets.     

The first‐feeding response of larval southern bluefin tuna,Thunnus maccoyii (Castelnau, 1872), and yellowtail kingfish,Seriola lalandi (Valenciennes, 1833), to prey density,prey size and larval density

We investigated the first‐feeding success of two species: southern bluefin tuna (Thunnus maccoyii) and yellowtail kingfish (Seriola lalandi) to determine if similar culture parameters can be used for both, especially when S. lalandi are held in the same tanks as prey for T. maccoyii. The feeding performance (proportion and intensity) was examined in three short‐duration (4 h) experiments: prey density, prey size and larval density. Increasing prey density from 0.5 to 25 rotifers mL^?1 increased the proportion of T. maccoyii and S. lalandi larvae feeding. Prey size alone did not affect feeding in either species. Seriola lalandi had a decreased proportion of larvae feeding when larval density reached 50 larvae L^?1 concurrent with a gradual increase in feeding intensity between 2 and 50 larvae L^?1. In T. maccoyii, there was no pattern to the effect of larval density on the proportion of larvae feeding. The overall feeding performance of larvae was higher in T. maccoyii than S. lalandi. Increased prey density improved the first‐feeding ability of T. maccoyii and S. lalandi larvae. The effect of larval density on S. lalandi feeding requires further investigation, to ensure that they remain feeding when provided as prey in T. maccoyii culture. The identification of factors in this study, which increase first‐feeding success, will improve the culture of both species.     

A genetic comparison of sympatric anadromous and resident Atlantic salmon

Many studies have identified the importance of local adaptation in Atlantic salmon (Salmo salar) and the strong genetic differences that exist between allopatric or parapatric resident and anadromous populations. However, as truly sympatric migratory phenotypes of Atlantic salmon have not been studied, it remains unclear whether distinct genotypes previously associated with life history differences are maintained through reproductive isolation and subsequent genetic drift or through natural selection induced by different life history requirements. In this study, sympatric anadromous and resident Atlantic salmon were sampled from three Newfoundland (Canada) watersheds to evaluate the genetic divergence of these life history forms. Eight microsatellite loci were used to quantify genetic variation within and among populations. Metrics of genetic differentiation (exact tests for population differentiation, pairwise θ values) provide no evidence of genetic differentiation between some sympatric anadromous and resident phenotypes within a system with no history of segregation. In the remaining two watersheds, the observed differentiation appears to be a consequence of historical segregation rather than life history form. Nonetheless, these differences have been maintained in contemporary times for several generations. At broader spatial scales, resident salmon were more genetically divergent from one another than anadromous life history forms and were more closely related to anadromous salmon from within their watershed than to resident salmon from other watersheds. The study indicates that both life history forms can be maintained within a single population, but that sympatric populations of different life histories can maintain genetic differences for at least several generations after being reconnected.     

The density dilemma: limitations on juvenile production in threatened salmon populations

Density‐dependent processes have repeatedly been shown to have a central role in salmonid population dynamics, but are often assumed to be negligible for populations at low abundances relative to historical records. Density dependence has been observed in overall spring/summer Snake River Chinook salmon Oncorhynchus tshawytscha production, but it is not clear how patterns observed at the aggregate level relate to individual populations within the basin. We used a Bayesian hierarchical modelling approach to explore the degree of density dependence in juvenile production for nine Idaho populations. Our results indicate that density dependence is ubiquitous, although its strength varies between populations. We also investigated the processes driving the population‐level pattern and found density‐dependent growth and mortality present for both common life‐history strategies, but no evidence of density‐dependent movement. Overwinter mortality, spatial clustering of redds and limited resource availability were identified as potentially important limiting factors contributing to density dependence. The ubiquity of density dependence for these threatened populations is alarming as stability at present low abundance levels suggests recovery may be difficult without major changes. We conclude that density dependence at the population level is common and must be considered in demographic analysis and management.     

Density‐dependent egg production in chub mackerel in the Kuroshio Current system

A paradigm of proportionality between spawning stock biomass (SSB) and total egg production (TEP) has been largely untested at multidecadal scales mainly because of difficulty in estimating annual TEP. Recently, this paradigm was directly tested for sardine (Sardinops melanostictus) and anchovy (Engraulis japonicus) at a multidecadal scale to reveal that SSB–TEP proportionality was partially distorted by intraspecific (sardine) and interspecific (anchovy) density dependence in total egg production per spawner individual (TEPPS) or unit weight (TEPPSW). In the present study, we demonstrate intraspecific density dependence in TEPPS/TEPPSW for chub mackerel (Scomber japonicus) in the Kuroshio Current system, using a proxy for TEPPS/TEPPSW, calculated from snapshot abundance data based on fishery‐independent egg surveys in combination with fishery‐dependent stock assessment data, at a multidecadal scale (38 years). TEPPS/TEPPSW exponentially declined with SSB, indicating a strong intraspecific density dependence in TEPPS/TEPPSW in chub mackerel. The observed phenomenon for chub mackerel was similar to that for sardine. Hence, intraspecific density dependence in TEPPS/TEPPSW may be a phenomenon that is generally applicable for species with a high maximum biomass and large population fluctuations. Lastly, we recommend the application of a TEP‐based framework to studies on recruitment mechanisms of fish.     

Colony‐specific differences in decadal longitudinal body composition of a capital‐breeding marine top predator

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Molecular evidence for cosmopolitan distribution of platyhelminth parasites of tunas (Thunnus spp.)

Global distribution of platyhelminth parasites and their host specificities are not well known. Our hypothesis was that platyhelminth parasites of large pelagic fishes are common around the world. We analysed molecular variation in three different taxa of platyhelminth parasites infecting four species of tunas: yellowfin tuna (Thunnus albacares, Scombridae) from Western Australia, southern bluefin tuna (Thunnus maccoyii, Scombridae) from South Australia, Pacific bluefin tuna (Thunnus orientalis, Scombridae) from Pacific Mexico and northern bluefin tuna (T. thynnus, Scombridae) from two localities in the Mediterranean (Spain and Croatia). Comparisons of ITS2 and partial 28S rDNA demonstrated two congeneric species of blood flukes (Digenea: Sanguinicolidae) from multiple hosts and localities: Cardicola forsteri from southern bluefin and northern bluefin tunas, and Cardicola sp. from Pacific bluefin and northern bluefin tunas; and a gill fluke, Hexostoma thynni (Polyopisthocotylea: Hexostomatidae), from yellowfin, southern bluefin and northern bluefin tunas. Partial 28S rDNA indicates that a second type of fluke on the gills, Capsala sp. (Monopisthocotylea: Capsalidae), occurs on both southern bluefin and Pacific bluefin tunas. This appears to be the first report of conspecific platyhelminth parasites of teleosts with a wide‐ranging geographical distribution that has been confirmed through molecular approaches. Given the brevity of the free‐living larval stage of both taxa of flukes on the gills (H. thynni and Capsala sp.), we conclude that the only feasible hypothesis for the cosmopolitan distribution of these flatworms is migrations of host tunas. Host migration also seems likely to be responsible for the widespread occurrence of the two species of blood flukes (Cardicola spp.), although it is also possible that these were translocated recently by the spread of infected intermediate hosts.     

Conjoint analysis of consumer preference for bluefin tuna

Tuna is one of the most important marine products in Japan, but fishery productivity is decreasing, especially for bluefin tuna (Thunnus orientalis, Thunnus thynnus) because of strict capture limits implemented by regional fisheries management organizations (RFMOs). Such capture limitations are necessitated by a shortage of resources. At the same time, full-cycle farming technology of Thunnus orientalis has recently been developed. This technology is set to achieve productivity levels at an industrial scale. In Japan, however, most consumers are believed to have a negative image of farmed products; therefore effective marketing is necessary. This study employs conjoint analysis via an internet questionnaire to clarify consumer preferences and the determine the possibility of marketing through provision of information to consumers regarding bluefin tuna and the environmental background of the problem. The results show that once consumers are provided with enough information about bluefin tuna, particularly in terms of the underlying resources problem, the willingness to pay (WTP) for full-cycle farmed fish is greater compared to conventionally farmed fish. Furthermore, if the product has an “eco-label,” the WTP increases drastically. Therefore, the informational process is important for marketing, and labeling can be an efficient marketing method.     

Comparison of the lipid profiles from wild caught eggs and unfed larvae of two scombroid fish: northern bluefin tuna (<Emphasis Type="Italic">Thunnus thynnus</Emphasis> L., 1758) and Atlantic bonito (<Emphasis Type="Italic">Sarda sarda</Emphasis> Bloch, 1793)

Lipids and essential fatty acids are determinants of the reproductive process in marine fish, affecting fecundity, egg quality, hatching performance, pigmentation and larval malformation. We have analyzed and characterized the lipids of eggs and unfed larvae of two wild caught scombroid fish, the Atlantic northern bluefin tuna (Thunnus thynnus) and Atlantic bonito (Sarda sarda). Dry matter and total lipid contents, polar and neutral lipid classes and total lipid fatty acid contents were determined in the eggs of bluefin tuna and eggs and unfed larvae during the development of Atlantic bonito. Bluefin tuna eggs had slightly but significantly more dry mass than bonito eggs but very similar lipid content. However, bluefin tuna eggs presented a higher polar lipid content due to increased proportions of phosphatidylethanolamine (PE), phosphatidylserine (PS) and phosphatidylinositol (PI). Bonito eggs and larvae showed increasing dry mass and decreasing lipid content with development. The proportion of polar lipids increased due to increased PE, PS and PI, whereas choline-containing polar lipids (phosphatidylcholine and sphingomyelin) remained relatively constant. Free cholesterol also increased, whereas the levels of other neutral lipids, especially triacylglycerol and steryl ester fractions, decreased, presumably due to utilization for energy to drive development. Bluefin tuna eggs had higher levels of n − 3 and n − 6 highly unsaturated fatty acids due to higher docosahexaenoic and arachidonic acid contents, respectively, than bonito eggs. The results are discussed in relation to the lipid and fatty acid requirements of larval scombroid fish in comparison to those of other larval marine finfish species under culture conditions.     

Estimation of yellowfin tuna (Thunnus albacares) habitat in waters adjacent to Australia’s East Coast: making the most of commercial catch data

The physical environment directly influences the distribution, abundance, physiology and phenology of marine species. Relating species presence to physical ocean characteristics to determine habitat associations is fundamental to the management of marine species. However, direct observation of highly mobile animals in the open ocean, such as tunas and billfish, is challenging and expensive. As a result, detailed data on habitat preferences using electronic tags have only been collected for the large iconic, valuable or endangered species. An alternative is to use commercial fishery catch data matched with historical ocean data to infer habitat associations. Using catch information from an Australian longline fishery and Bayesian hierarchical models, we investigate the influence of environmental variables on the catch distribution of yellowfin tuna (Thunnus albacares). The focus was to understand the relative importance of space, time and ocean conditions on the catch of this pelagic predator. We found that pelagic regions with elevated eddy kinetic energy, a shallow surface mixed layer and relatively high concentrations of chlorophyll a are all associated with high yellowfin tuna catch in the Tasman Sea. The time and space information incorporated in the analysis, while important, were less informative than oceanic variables in explaining catch. An inspection of model prediction errors identified clumping of errors at margins of ocean features, such as eddies and frontal features, which indicate that these models could be improved by including representations of dynamic ocean processes which affect the catch of yellowfin tuna.     

Density‐dependent growth and survival in salmonids: Quantifying biological mechanisms and methodological biases

Understanding the complex variation in patterns of density‐dependent individual growth and survival across populations is critical to adaptive fisheries management, but the extent to which this variation is caused by biological or methodological differences is unclear. Consequently, we conducted a correlational meta‐analysis of published literature to investigate the relative importance of methodological and biological predictors on the shape and strength of density‐dependent individual growth and survival in salmonids. We obtained 160 effect sizes from 75 studies of 12 species conducted between 1977 and 2019 that differed in experimental approach (sensu Ecological Monographs, 54, 187–211; 65 laboratory experiments, 60 observational field studies, and 35 field experiments). The experimental approach was the strongest factor influencing the strength of density dependence across studies: density‐dependent survival was stronger than growth in field observational studies, whereas laboratory experiments detected stronger density‐dependent growth than survival. The difference between density‐dependent growth and survival was minimal in field experiments, and between lotic and lentic habitats. The shape of density dependence (logarithmic, linear, exponential or density‐independent) could be predicted with 66.7% accuracy based solely on the experimental approach and the density gradient (highest/lowest*100) of the study. Overall, the strength and shape of density dependence were primarily influenced by methodological predictors, while biological factors (predator presence, food abundance, and species) had predictable but modest effects. For both empirical studies and adaptive fisheries management, we recommend using field experiments with a density gradient of at least 470% to detect the proper shape of the density‐dependent response, or accounting for potential biases if observational or laboratory studies are conducted.     

Was historical cisco Coregonus artedi yield consistent with contemporary recruitment and abundance in Lake Superior?

Historically, cisco Coregonus artedi Lesueur was the predominant prey fish and target of commercial fisheries throughout Lake Superior, but most spawning stocks collapsed by the mid-1900s. Stocks partially recovered by the early 1990s, but contemporary abundance is considered to be below historical levels and driven by intermittent recruitment. Stochastic, age-structured simulation models were used to determine whether historical (pre-1955) cisco yield in Lake Superior was consistent with contemporary (1992–2015) abundance, life-history characteristics and recruitment dynamics. When compared to contemporary stocks, the findings suggest historical stocks had: (1) similar recruits per spawner at low spawning stock sizes; (2) lower rates of compensatory density dependence; (3) similar or lower recruitment variation depending on the area and (4) higher median adult and age-1 density. These findings are consistent with the hypothesis that eutrophication during the historical period supported greater recruitment and adult abundance and that re-oligotrophication during the contemporary period may be limiting full recovery.     

Polymorphisms within promoter of Japanese flounder (<Emphasis Type="Italic">Paralichthys olivaceus</Emphasis>) ovary cytochrome P450-c19 (CYP19a) gene associated with reproductive traits

Cytochrome P450 aromatase, which is encoded by the CYP19a gene, converts androgens to estradiol. Considerable evidence suggests that estrogens play an important role in fish reproductive process. Therefore CYP19a is an excellent candidate gene for reproductive traits. Variants in the promoter of the CYP19a gene might also be involved in the control of aromatase expression and affect regulatory mechanism linking cholesterol metabolism to the synthesis of sex steroids. In this study, nine single-nucleotide polymorphisms (SNPs) were detected with polymerase chain reaction-single stranded conformational polymorphism (PCR-SSCP), namely A-680G, G-672A, AGTAGT-649 inserting or deleting, T-623C, C-410A, T7-454A, T-402C, TTTCCAGACTGA-345 inserting or deleting, and G-297C. Nine SNPs within the promoter of the CYP19a gene were tested for association with four reproductive traits [serum testosterone (T), serum 17β-estradiol (E₂), hepatosomatic index (HSI), and gonadosomatic index (GSI)] in a population of 50 female Japanese flounder individuals. A locus, P3 (TTTCCAGACTGA-345 inserting or deleting, G-297C), was significantly associated with 17β-estradiol (E₂) level (P < 0.05) in female Japanese flounder. In addition, there was significant association between one diplotype based on nine SNPs and reproductive trait. The genetic effect for E₂ level of diplotype D3 was significantly higher than those of other diplotypes (P < 0.05). Results indicate that these genetic effects of those variants on E₂ level may help to explain CYP19a gene status in the reproductive endocrinology of Japanese flounder.     

Diversity in reproductive traits of arapaima (Arapaima spp., Müller, 1843) in Amazonian várzea floodplains: Conservation implications

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Rapid response of fish and aquatic habitat to removal of a tidal barrier

1. River barrier removal is used increasingly as a conservation tool to restore lotic habitat and river connectivity, but evidence of its efficacy is incomplete. This study used a before–after methodology to determine the effects of removing a tidal-limit barrier on the fishes, macroinvertebrates, and habitats of an English coastal stream.
2. Following barrier removal, habitat diversity increased immediately upstream and remained similar downstream. Mobilized silt altered the substrate composition immediately downstream, but this was temporary as silt was flushed out the following winter. Changes to macroinvertebrate communities occurred upstream and downstream of the former barrier but these were transient.
3. A dramatic and sustained increase in fish density occurred immediately upstream of the barrier after its removal, but effects downstream were minor. The fish community upstream changed, largely due to rapid recruitment and dispersal of endangered European eel (Anguilla anguilla). Eel density in the formerly impounded zone increased from 0.5 per 100 m² before barrier removal to 32.5 per 100 m² 5 months after removal. By 17 months after barrier removal there was no difference in eel density across the six sections sampled.
4. Although resident stream fishes such as bullhead (Cottus gobio species complex, protected under the European Habitats Directive) were abundant in middle and upper-stream sections, brown trout (Salmo trutta, a listed species for biodiversity conservation in England and Wales) density remained low during the study and recruitment was poor. This suggests that although colonization access for anadromous trout was available, habitat upstream may have been unsuitable for reproduction, indicating that wider catchment management is required to complement the restoration of connectivity.
5. These findings suggest that tidal barrier removal is an effective method of restoring lotic habitats and connectivity, and can be beneficial for resident and migratory fishes including those of conservation importance (e.g. European eel) in coastal streams.

     

Effectiveness of tori-lines for further reduction of incidental catch of seabirds in pelagic longline fisheries

To improve the performance of tori-lines (bird-scaring lines) in reducing incidental catch of large seabirds (albatrosses and giant petrels) in the pelagic longline fishery, we analyzed factors affecting the performance of tori-lines based on data collected by Japanese scientific observers in the southern bluefin tuna Thunnus maccoyii fishery from 2002 to 2005. We classified the variety of tori-lines by the main tori-line length and the streamer type. Two types of streamers were identified: type A, several long streamers made of nylon cord attached to the main tori-line by metal swivels; type B, many short streamers made of polypropylene packing bands braided into the main tori-line. In a model analysis, we found that the main tori-line length was an important factor affecting tori-line performance, and the two types of streamers had similar effectiveness. Since the light type B streamer has the advantage of practical feasibility, this type can be another option for use in tori-lines if used with a main tori-line of sufficient length.