Transition of Ethiopian highland forests to agriculture-dominated landscapes shifts the soil microbial community composition

Background

Land use changes and related land management practices significantly alter soil physicochemical properties; however, their effects on the soil microbial community structure are still unclear. In this study, we used automated ribosomal intergenic spacer analysis to determine the fungal and bacterial community composition in soils from different land use areas in the Ethiopian highlands. Soil samples were collected from five areas with different land uses, natural forest, eucalyptus plantation, exclosure, grassland and cropland, which had all historically been natural forest.

Results

Our results showed a significant shift in the soil bacterial and fungal community composition in response to land use change. We also identified soil physicochemical factors corresponding to the changes in bacterial and fungal communities. Although most soil attributes, including soil organic carbon, total soil nitrogen, labile P, soil pH and soil aggregate stability, were related to the change in bacterial community composition, the total soil nitrogen and soil organic carbon had the strongest relationships. The change in fungal community composition was correlated with soil nutrients, organic carbon, soil nitrogen and particularly the labile P concentration.

Conclusions

The fungal community composition was likely affected by the alteration of vegetation cover in response to land use change, whereas the bacterial communities were mainly sensitive to changes in soil attributes. The study highlights the higher sensitivity of fungal communities than bacterial communities to land use changes.

     

Effects of cultivation of Osr HSA transgenic rice on functional diversity of microbial communities in the soil rhizosphere

With the widespread cultivation of transgenic crops, there is increasing concern about unintended effects of these crops on soil environmental quality. In this study, we used the Biolog method and ELISA to evaluate the possible effects of Osr HSA transgenic rice on soil microbial utilization of carbon substrates under field conditions. There were no significant differences in average well-color development(AWCD) values, Shannon–Wiener diversity index(H), Simpson dominance indices(D) and Shannon–Wiener evenness indices(E) of microbial communities in rhizosphere soils at eight samplings between Osr HSA transgenic rice and its non-transgenic counterpart. The main carbon sources utilized by soil microbes were carbohydrates, carboxylic acids, amino acids and polymers. The types,capacities and patterns of carbon source utilization by microbial communities in rhizosphere soils were similar throughout the detection period. We detected no Osr HSA protein in the roots of Osr HSA transgenic rice. We concluded that Osr HSA transgenic rice and the r HSA protein it produced did not alter the functional diversity of microbial communities in the rhizosphere.     

Effect of season, soil type and fertilizer on the biomass production and chemical composition of five tropical shrub legumes with forage potential

The biomass production and the nutritive value of three tropical shrub legumes with condensed tannins (CT) ( Calliandra calothyrsus , Flemingia macrophylla , Leucaena leucocephala ) and two without CT ( Cratylia argentea , Desmodium velutinum ) as nitrogen-rich feed supplements for ruminants were assessed in two field experiments in Colombia. In one experiment, conducted on two different typical tropical soils (mollisol vs. oxisol; pH, 7·8 vs. 5·0; P content, 43 vs. 2 mg kg DM⁻¹), the effects of low and high levels of fertilizer application with P, K, Ca, Mg and S were tested in both the dry and rainy seasons. In a second experiment on the oxisol, the effect of a lower level of application of either P or S fertilizer was assessed. On the oxisol, C. calothyrsus and F. macrophylla had the highest biomass production (93 and 100 g DM plant⁻¹ in 9 weeks respectively) but the dry season caused extremely low DM yields in all species tested. Leucaena leucocephala did not grow on the oxisol but had the highest biomass production on the mollisol (454 g DM plant⁻¹ in 9 weeks). On the oxisol, the mineral concentrations of the forage were below the requirements of ruminant livestock. Fertilizer treatment had no clear effects on the nutrient composition of the forage. The non-CT shrub C. argentea had the highest concentrations of most minerals in its forage.     

Greenhouse gases emission from paddy soil during the fallow season with and without winter flooding in central Japan

Many papers on measurements of greenhouse gases (GHGs) emission in rice paddies during a rice cropping season have been published. During a non-cropping season between Nov. and Apr., we investigated direct and indirect GHGs emissions in rice paddies. The indirect GHGs emission was evaluated as the amount of dissolved gases leaching from the paddy fields. Water management practices for the experiment were (1) continuous flooding (CF) and (2) non-flooding (NF). Although the direct CO₂ emission in the CF treatment was remained nearly zero during the non-cropping period, direct CO₂ emission in the NF treatment was continuously observed throughout the non-cropping period. The concentration of dissolved N₂O in the NF treatment was below the detection limit of the instrument during the non-cropping period except immediately after the flooding and before the drainage. The concentration of dissolved N₂O kept approximately 2 µg L^?1 during the non-cropping period in the CF treatment. The direct CH₄ emission and dissolved CH₄ were not observed during the non-cropping period. Total gas emission in the NF treatment was 10 times as large as that in the CF treatment. Direct CO₂ emission accounted for more than 90 % of the total emission in both treatments.     

The influence of potassium fertilizer application on tuber yield and mineral element content of potato petioles during the growing season

Potassium was applied at rates equivalent to 0, 135, and 250 pounds per acre (0, 151, 180 kg K/ha) to study the effect of soil applied K on tuber yields and concentration of mineral elements in the petioles of potato plants during growth both measured at 14 day intervals. Petioles were analyzed for N, P, K, Ca, Fe, Mg, Zn, Cu, Al, Mn, and B. Seasonal trends in petiolar K content were highly correlated with tuber bulking regardless of rate of K application. Increasing K application rates generally increased petiolar levels of K and Zn (early in the season) and decreased the levels of N, Mg, Ca, Zn (late in the season), Al, Fe, Cu, and B in the petioles. Concentrations of P and Mn were unaffected by K applications. Seasonal trends in the mineral element content of petioles were not influenced by K. Results indicate that a prediction model for tuber yield based upon trends in the K content of petioles is valid under differing soil levels of K.     

Genotypic variations in the plasticity of nodal root penetration through the hardpan during soil moisture fluctuations among four rice varieties

Rainfed lowland rice fields are characterized by soil moisture fluctuations (SMF) and the presence of hardpan that impedes deep rooting and thus limits water extraction from deep soil layer during the periods of drought. In this study, we used rootboxes with three layers; shallow layer, artificial hardpan, and deep and wet layer below the hardpan, to evaluate differences in the plasticity of nodal roots elongation through the hardpan and promote root branching below the hardpan in response to SMF among four rice varieties; Sasanishiki, Habataki, Nipponbare, and Kasalath. Experiments were conducted during the summer and autumn seasons. Plasticity was computed as the difference in root traits within each variety between the SMF and continuously well-watered treatments. In both experiments, Habataki consistently tended to exhibit higher root plasticity than the other three varieties by increasing number of nodal roots that penetrated the hardpan during rewatering period in SMF, when the soil moisture increased and penetration resistance decreased. This root plasticity then contributed to greater water use at the deeper soil during the subsequent drought period and overall shoot dry matter production. Habataki had significantly higher δ¹³C value in roots at deep layer than roots at the shallow and hardpan layers under SMF, which may indicate that these were relatively newly grown roots as a consequence of root plasticity. This study also indicates that CSSLs derived from Sasanishiki and Habataki varieties may be suitable for the analysis of QTLs associated with root plasticity expression in rainfed lowland with hardpan and experiencing SMF.     

不同种植方式对坡地幼龄茶园水土流失及茶苗成活的影响

通过对黔北湄潭地区不同种植方式的坡地幼龄茶园雨季土壤流失与茶苗成活状况调查分析,表明顺坡幼龄茶园土壤流失量大(0.680～4.310t/667m2),茶苗成活率较低(平均值60.38%);等高幼龄茶园基本无土壤流失,在7～9月连续干旱的不利气候下,茶苗成活率较高(82.94%～87.26%);坡度越大,坡越长的顺坡幼龄茶园,土壤流失越严重,茶苗成活率越低(25°～35°、30～40m、3.930～4.310t/667m2、30%～55.80%);行间有效覆盖的顺坡幼龄茶园,基本无土壤流失,茶苗成活率高(达90.0%)。其中,土壤流失量与坡度呈明显正相关(y=-0.9788+0.1492x,r=0.8239),茶苗成活率与坡度呈明显负相关(y=88.5639-1.5411x,r=-0.8386),与土壤流失量亦呈明显负相关(y=75.6316-7.7502x,r=-0.7310)。     

Sodium fertilizer application to pasture. 6. Effects of combined applications with sulphur on herbage production and chemical composition in the season of application

The effect of sulphur and sodium fertilizers on the response of a perennial ryegrass ( Lolium perenne ) sward was examined over 2 years. Sulphur fertilizer was applied as ammonium sulphate at 0 or 97·5 kg S ha⁻¹ year⁻¹ and sodium fertilizer as sodium nitrate at 0 (nil), 31 (low), 62 (medium) or 94 (high) kg Na ha⁻¹ year⁻¹, with nitrogen input balanced across all treatments. Both sulphur and sodium increased herbage yield. Sodium fertilizer increased herbage sulphur concentration and sulphur fertilizer slightly increased herbage sodium concentration, but there were no major interactions between the two fertilizers on herbage yield or composition in the season of application. Sodium fertilizer increased dry-matter digestibility, water-soluble carbohydrate concentration and the live proportion of the herbage. Herbage sodium and magnesium concentrations were increased and potassium concentration decreased by sodium fertilizer. Sulphur fertilizer increased herbage dry-matter digestibility and water-soluble carbohydrate concentration. Sulphur and potassium concentrations were also increased and non-protein nitrogen, magnesium and phosphorus concentrations decreased in response to sulphur fertilizer. It is concluded that, although there was evidence of facilitation of sodium uptake by sulphur fertilizer and vice versa, this was not sufficient to produce synergistic effects on herbage growth in the season of application.     

Agronomic fortification of rice grains with secondary and micronutrients under differing crop management and soil moisture regimes in the north Indian Plains

Although the System of Rice Intensification (SRI) has been reported to produce higher paddy (Oryza sativa L.) yields with better-quality grains, little research has addressed the latter claim. This study investigated the interactive effects of rice cultivation methods with different irrigation schedules and plant density on the uptake and concentration of sulfur (S), zinc (Zn), iron (Fe), manganese (Mn) and copper (Cu) in the grain and straw of two rice cultivars during two rainy seasons in the northern plains of India. As the two seasons differed in amounts of rainfall, there were impacts of soil moisture differences on nutrient uptake. Plots with SRI cultivation methods enhanced the grain uptake and concentrations of S, Zn, Fe, Mn and Cu by 36, 32, 28, 32 and 63%, respectively, compared to conventional transplanting (CT). Under SRI management, the highest concentrations of S, Zn and Cu in the grain and straw occurred with irrigation intervals scheduled at 3 days after disappearance of ponded water (DADPW; 3_D), whereas Fe and Mn concentrations in the grain and straw were higher with irrigation at 1 DADPW (1 _D ) compared with plots under 3 _D or 5 DADPW (5 _D ). The higher nutrient uptakes were also manifested in higher grain yield in 1 _D and 3 _D plots (by 9 and 6%, respectively) compared with 5 _D . Wider spacing (25 × 25 cm) compared with closer spacing (20 × 20 cm) significantly increased yield and the uptake and concentrations of all the said nutrients in the grains. When comparing the performance of two cultivars, the total uptakes of Zn, Fe, Mn and Cu in both grain and straw were significantly more in Hybrid 6444 than the improved variety Pant Dhan 4. Overall, SRI crop management compared to CT practices led to more biological fortification of rice grains with respect to S and the four micronutrients studied, giving a concomitant yield advantage of about 17% on average in this region.