Phenotypic variation in fruit and seed morphology of Adansonia digitata L. (baobab) in five selected wild populations in Malawi

Adansonia digitata L. (Baobab) is widely distributed throughout Sub-Saharan Africa stretching from Senegal to Sudan, and from Ethiopia to Natal. Information of phenotypic and genetic variation is a prerequisite for the domestication and improvement of baobab fruits from the wild. A study was done to determine within and between provenance variability in fruit and seed characteristics of five populations selected from four silvicultural zones and assess whether morphometric traits could delineate populations from different zones into land races. Fruits were characterized from 55 trees representing a wide geographical range. Six fruit traits and three individual seed traits were assessed. Results showed highly significant differences (P????0.001) in fruit, pulp, and seed weight, fruit length and width, number of seed, individual seed weight, seed length and width within and between populations. Mean fruit weight ranged from 125.8?±?3.25 to 162.9?±?3.25?g, seed weight ranged from 38.6?±?2.5 to 66?±?2.01?g and pulp weight ranged from 28.7?±?1.33 to 41.4?±?1.33?g. Single seed weight showed pronounced evidence of divergence of populations into ecotypes. The rich diversity found between and within populations is important for domestication purposes and tree improvement through selection and breeding. All populations could be used for seed source but distribution should be consciously done recognizing existence of races.     

Genetic variation among and within provenances of Adansonia digitata L. (Baobab) in seed germination and seedling growth from selected natural populations in Malawi

Baobab (Adansonia digitata L.) trees have a wide variety of subsistence and economic values across sub-Saharan Africa. Knowledge of the genetic variation within and between the species is essential for management and designing domestication, improvement and conservation strategies. Fifty-nine half-sib families were evaluated in the nursery to determine the genetic variation and control within and between the populations from four silvicultural zones. Seed germination and seven seedling growth parameters were assessed. Total phenotypic variance, family variance, within family variance, individual narrow sense heritability, and additive genetic coefficient of variation (AGCV) were derived from observed and expected mean squares. There were highly significant differences in seed germination, plant height, root collar diameter, number of leaves, shoot height and diameter, tuber diameter and weight. Provenance variation in germination ranged from 46.7?±?3.3 to 68.7?±?3.3% while tree-to-tree variation ranged from 6.3?±?8.6 to 95.5?±?8.6%. Coefficient of variation in seedling growth variables ranged from 18.6 to 43.6%. Individual narrow sense heritabilities (h²) ranged from 0.07 to 0.71. AGCV ranged from 3.21 to 14.67%. Morphological traits showed that mainland populations were genetically distant from the island one. High and moderate additive genetic control of traits and AGCV show the potential that Baobab can also respond well to tree improvement. High phenotypic variation found in the study offers an opportunity to effect selection of superior attributes at both provenance and individual tree-to-tree level.     

Genetic diversity of American hazelnut in the Upper Midwest,USA

World hazelnut production is based on European hazelnut (Corylus avellana) and is limited by the narrow climatic requirements of this species. The cold hardiness and disease resistance of the American hazelnut (Corylus americana) offer opportunities to expand production to new areas including the Upper Midwest (USA). The American hazelnut is a phenotypically diverse species. This study used ten microsatellite marker loci to investigate genetic diversity in 1140 individuals sampled from 25 populations across Wisconsin, Iowa, Minnesota and North Dakota. Overall, the marker loci were highly polymorphic (H_o = 0.69, H_e = 0.78, PIC = 0.84) with 7–13 alleles per locus. There was very high genetic diversity within populations (90% of the total) and some tendency toward population differentiation. Mantel’s test showed that genetic distance among the populations was not correlated with geographic distance. We conclude that selection of individuals for use in breeding should be based primarily on phenotype (productivity, nut size, percent kernel, ease of harvest), with care to include representatives of genetically differentiated populations.     

Genetic aspects of age dynamics of a natural Picea abies (L.) Karst. population in the Białowieża Primeval Forest, Poland

We studied temporal changes in the genetic structure and diversity of a naturally regenerated Picea abies (L.) Karst. (Norway spruce) population in the Bia?owie?a Primeval Forest, Poland. The analysis included five age classes of trees: newly germinating seedlings (in laboratory conditions), seedlings up to 3 years old, young trees 4–10 years old, middle-aged trees 11–100 years old, and trees older than 100 years. We conducted genetic analyses of 26 allozyme loci using dormant buds from 405 individuals and 100 embryos. The results showed that the naturally regenerating Norway spruce population is genetically heterogeneous across the studied age classes. As determined by Chi squared tests, there were statistically significant differences in frequencies of alleles and genotypes as well as Wright’s index values (F) among the five age classes. The level of genetic differentiation (pairwise F_ST = 0.5–2.3 %) among the age class groups was equal to levels previously determined for various populations of this species. The Ewens-Watterson test for neutrality showed that one or two loci across different age classes of Norway spruce were affected by the selection process. The distinctiveness of embryo and seedling classes was confirmed by the number of detected alleles, the number of private alleles, the level of observed heterozygosity, and Wright’s index value. The results obtained in the present study indicate there are interesting dynamics of adaptation processes occurring in the natural age-diverse population of Norway spruce in the Bia?owie?a Primeval Forest.     

Fruits of our labour: contribution of commercial baobab (Adansonia digitata L.) fruit harvesting to the livelihoods of marginalized people in northern Venda, South Africa

Baobabs (Adansonia digitata) provide products, mainly bark, leaves and fruit, which are used for subsistence purposes and traded to generate cash. Recently, demands for baobab fruit derivatives on the global organic market, namely pulp and seed oil, have increased rapidly, leading to concerns that this may have negative impacts on subsistence users, particularly in areas where there is an existing high dependence on these products, such as West Africa. In contrast, in southern Africa baobab fruit are probably ‘underutilized’ and commercialization would help reduce poverty. This study evaluated the direct-use (subsistence) and income (cash) value of baobab fruit on the livelihoods of baobab fruit harvesters in South Africa. Harvesters were mostly women (98 %), many of whom were unemployed (98 %) and uneducated (70 %). The majority (68 %) received social grants and were involved in informal occupations (55 %), which contributed 35 and 18 % to total annual income respectively. The trade and direct-use value of non-timber forest products contributed 14 and 33 % to annual income, of which, baobab fruit made up 38 and 4 % respectively. Baobab fruit was the only non-timber forest product that had a higher income value (4×) than direct-use value. Cash earned was used to buy food (73 %) and invest in small businesses, suggesting a move from subsistence to cash economy. It is suggested that commercialization of baobab fruit will have far-reaching benefits; and that secured access to trees and investment in local beneficiation will further increase the value of the resource for many marginalized people in southern Africa.     

Pollen dispersal,mating patterns and pollen contamination in an insect-pollinated seed orchard of <Emphasis Type="Italic">Schima superba</Emphasis> Gardn. et Champ.

Pollen flow and mating patterns are the most important factors influencing the genetic structure of insect-pollinated forest trees and are essential parts of genetic management in seed orchards. We investigated pollen flow, the mating system and the level of pollen contamination in a clonal seed orchard of Schima superba Gardn. et Champ. In total, 328 open-pollination progenies coming from 11 mother trees were identified using 13 polymorphic microsatellite loci. A total of 203 full-sib families were identified and were nested among the 11 studied seed donors. The male reproductive success rate from 0.49 to 7.77% for most male parents, with an average of 2.44%. More than 80% of the crosses were found within a distance of 60 m, and the most frequent pollination distance between female parent and male parents was approximately 20 m. Mating system analysis showed that the outcrossing level was very high (t _m  = 1.000, outcrossing rate = 98.5%) in the seed orchard and that there was an average of 2.3 effective pollen donors (N _ep ) per female parent. In addition, the mating success of individual males within neighborhoods was moderately influenced by their fecundity and the direction of their location relative to mother trees. The pollen contamination from outside the seed orchard was high (7.01%). Our findings are valuable for the assessment of seed orchards, and it may be worthwhile to use pollen management strategies to decrease pollen contamination and increase the genetic quality of the seeds produced.     

Genetic diversity in two threatened species in Vietnam: <Emphasis Type="Italic">Taxus chinensis</Emphasis> and <Emphasis Type="Italic">Taxus wallichiana</Emphasis>

Taxus chinensis and T. wallichiana in have been threatened in their distribution areas in recent decades because of their over-exploitation and reduction and destruction of native habitats. Determining the genetic diversity in populations of the two species will provide guidelines for their protection and preservation. Two hundred and fifteen trees from six populations of T. chinensis and 150 sampled trees of T. wallichiana were sampled. Six microsatellite primer pairs selected from 16 primer pairs were used to investigate genetic variation at the population and species levels. Five yielded polymorphic alleles, and among the 13 putative alleles amplified, 11 were polymorphic (accounting for 76.33 %).Shannon’s information index (I) and percentage of polymorphic bands (PPB) (I = 0.202 and PPB = 67.22 % for T. chinensis; I = 0.217 and PPB = 65.03 % for T. wallichiana). Both species had low levels of genetic diversity (mean H _o = 0.107, H _e = 0.121 for T. chinensis; H _o = 0.095, H _e = 0.109 for T. wallichiana). Genetic differentiation among populations was higher (F _ST = 0.189) for T. chinensis and lower (0.156) for T. wallichiana, indicating limited gene flow (Nm) among populations for T. chinensis (0.68) and T. wallichiana (0.65). Variation among individuals of T. chinensis was 63.59 and 73.12 % for T. wallichiana. Thus, the threatened status of the two conifers is related to a lack of genetic diversity. All populations are isolated in small forest remnants. An ex situ conservation site should be established with a new population for these species that comprises all the genetic groups for the best chance to improve their fitness under environmental stresses.     

木荷1代育种群体遗传多样性分析

木荷为我国亚热带地区主要的珍贵优质阔叶用材树种和生态防护树种.利用筛选的14对多态性强的SSR引物,对木荷1代育种群体中来自15个产地133个亲本进行遗传多样性分析,为其优异种质资源保存、杂交亲本选配及新种质创制提供科学依据.结果表明:14对引物共扩增86个位点,每对引物检测到的等位基因数(Na)变异范围为2～11个,平均等位基因数(Na)为6.14个,平均有效等位基因数(Ne)为3.23个,平均观察杂合度(Ho)为0.572 0,平均Shannon信息指数(I)和平均Nei's基因多样性指数(Nei)分别为1.224 7和0.599 0,说明木荷1代育种群体具有丰富的遗传多样性,其中,福建建瓯产地遗传多样性最高,浙江遂昌产地遗传多样性最低.木荷1代育种群体中成对亲本间遗传距离为0.023 3～1.633 8,平均为0.6067.不同产地遗传多样性与纬度呈显著的负相关关系(r=-0.5162,p=0.048 9).通过UPGMA聚类,可将133个育种亲本分成3个类群,其中,类群3又分为4个亚类群.木荷亲本选配时,应充分考虑优树的产地来源.     

Assignment testing reveals multiple introduced source populations including potential ash hybrids (Fraxinus excelsior × F. angustifolia) in Ireland

Large-scale reforestation programmes are a major source of unwarranted gene flow and can have profound consequences on local genetic diversity. Recently, ash has been introduced to Ireland from continental Europe to stock plantations but has often exhibited poor stem form. It was not known whether these trees were Fraxinus excelsior, Fraxinus angustifolia or interspecific hybrids that are known to occur in continental Europe. F. excelsior is the only native ash in Ireland, so the introduced populations represent a potential threat for the genetic diversity of native populations. We characterized the introduced trees within two plantations (Clonee and Kildalkey) using morphological characters and six microsatellite markers. Samples from continental Europe were included for comparison. Plantations exhibited higher genetic diversity than control populations because our data suggest they contain a mixture of several provenances. There was a small but significant differentiation between plantations and control populations (Ф_CT = 0.0211). Bayesian analysis to infer population structure and to assign introduced individuals to reference populations clearly demonstrated the presence of hybrid individuals within the plantations. The percentage of trees detected with potential hybrid origin ranged from 28 to 58 % depending on the plantation and the threshold data analysis level chosen. Most hybrids could be considered cryptic because there was a lack of intermediate morphology for hybrid individuals that mainly clustered with F. excelsior. The results indicated that the source of material at the two plantation sites differed. Management options to minimize the impact of these introduced populations are discussed.     

Magnitude and efficiency of genetic diversity captured from seed stands of <Emphasis Type="Italic">Pinus nigra</Emphasis> (Arnold) subsp. <Emphasis Type="Italic">pallasiana</Emphasis> in established seed orchards and plantations

To test how efficiently plantations and seed orchards captured genetic diversity from natural Anatolian black pine (Pinus nigra Arnold subspecies pallasiana Holmboe) seed stands, seed sources were chosen from 3 different categories (seed stands (SS), seed orchards (SO) and plantations (P)) comprising 4 different breeding zones of the species in Turkey. Twenty-five trees (mother trees) were selected from each SS, SO and P seed sources and were screened with 11 Random Amplified Polymorphic DNA (RAPD) markers. Estimated genetic diversity parameters were found to be generally high in all Anatolian black pine seed sources and the majority of genetic diversity is contained within seed sources (94%). No significant difference in genetic diversity parameters (numbers of effective alleles, % of polymorphic loci and heterozygosity) among seed source categories was found, except for a slight increase in observed heterozygosities in seed orchards. For all seed source categories, observed heterozygosity values were higher (H_o = 0.49 for SS, 0.55 for SO and 0.49 for P) than expected ones (H_e = 0.40 for SS, 0.39 for SO and 0.38 for P) indicating the excess of heterozygotes. In general, genetic diversity in seed stands has been transferred successfully into seed orchards and plantations. However, the use of seeds from seed orchards can increase the amount of genetic diversity in plantations further. The study also demonstrated that number of plus-tree clones (25–38) used in the establishment of seed orchards was adequate to capture the high level of diversity from natural stands.     

Genetic diversity in natural populations of Gmelina arborea: implications for breeding and conservation

Gmelina arborea is a valuable plantation tree species that is native to South and Southeast Asia. In this study, 534 samples representing 19 natural populations in India, China, Thailand and Myanmar were analyzed with 10 polymorphic microsatellite markers. The genetic diversity analysis revealed highly polymorphic loci (N_a?=?16.4), a good level of genetic diversity (H_o?=?0.56; H_e?=?0.83) and the deficiency of heterozygotes in G. arborea populations evidenced by positive fixation index and deviation from Hardy?CWeinberg Equilibrium in all loci and most populations. The Analysis of Molecular Variance attributed 21, 10 and 69% of total genetic diversity to among-region, among-population (within region) and within-population variation. Unweighted Pair Group Method with Arithmetic Mean dendrogram and Principle Coordinate Analysis revealed three separate clusters composed of China, India and Thailand/Myanmar that were consistent with geographical distance and the presence of natural barriers to gene flow. Populations from within India grouped together genetically consistent with geographical locations, with the exception of the Nowgong population (eastern India), that might have originated from the Kasa area (western India) with which it has high genetic similarity. Understanding genetic diversity and structure of G. arborea populations serve as an important reference for tree breeding programs and conservation strategy. Breeding populations of G. arborea should include selections from each of the major geographic regions to maximize genetic diversity and heterosis. Vegetative propagated clones of elite trees can be used for plantation to address the issue of high level of segregation among seed derived plants.     

Genetic diversity analysis of switchgrass (Panicum virgatum L.) populations using microsatellites and chloroplast sequences

The agricultural landscape of the United States could soon be changed by planting of switchgrass (Panicum virgatum L.) cultivars to meet government-mandated targets for lignocellulosic bioenergy production and consumption. This alteration could affect the genetic structure of wild switchgrass populations, which are native to the eastern half of North America through cultivar introgression. In this study, PCR amplification of microsatellite fragments as well as chloroplast gene-specific markers were utilized to quantify the genetic diversity and structure of five native populations and three agronomic fields (hereafter ‘populations’) planted with switchgrass cultivars. Microsatellite polymorphism across all the switchgrass populations ranged from 91.4 to 100 %. Overall, natural switchgrass populations had significantly higher mean genetic diversity than agronomic switchgrass cultivars (0.262 ± 0.102 and 0.201 ± 0.082 respectively, t test p < 0.008). Natural switchgrass populations had significantly higher total genetic diversity within (H_S) and among (H_T) as compared to agronomic switchgrass cultivars. A clear separation of natural and agronomic switchgrass populations was noted using principal component analysis and STRUCTURE analysis. A grouping pattern similar to that obtained in the microsatellite study was observed when chloroplast nucleotide sequence variation was assessed. In the realm of bioenergy sustainability, our results highlight the need to consider the genetic structure of cultivars for bioenergy when they are grown in proximity to native switchgrass populations.     

Genetic diversity and population structure in wild stands of cacao trees (Theobroma cacao L.) in French Guiana

The native cacao trees (Theobroma cacao L.) in south-eastern French Guiana represent a noteworthy fraction of the genetic diversity of this species. Several scientific surveys have led to the collection of numerous accessions, which provides an opportunity for investigating the pattern of genetic diversity in natural populations. Using a capillary electrophoresis genotyping system, we fingerprinted 189 wild trees in 18 natural populations. Based on the 15 loci SSR profiles, we analyzed the intra- and inter-population variation and their relationship with control clones. The global allelic richness was 4.87 alleles per locus, but was 2.4 on average within individual populations; gene diversity was 0.368 and observed heterozygosity was low (0.160). Major structuring was discovered in the metapopulation of French Guianan wild cacao trees (Fst = 0.20), which could be explained by the biological characteristics of the cacao tree and the climatic events that affected the Guianan forests in the Quaternary period.     

红豆树优树子代遗传多样性及与生长相关性分析

[目的]研究红豆树优树自由授粉子代遗传多样性及其对生长的影响,比较天然居群子代和孤立木子代遗传多样性差异,揭示子代遗传多样性的变化规律及天然居群在子代遗传多样性维持中的作用,为红豆树遗传保育和优异种质挖掘提供科学依据。[方法]以来自浙、闽、赣、川等26个红豆树优树自由授粉家系为研究对象,利用11对SSR引物对765个子代群体进行遗传多样性评价,同时分析子代遗传多样性参数与种子、生长性状的相关性。[结果](1)红豆树优树子代群体具有较高的遗传多样性,有效等位基因数为7.766个,观测杂合度(H_O)和期望杂合度(H_E)分别为0.469和0.865。(2)除SSR8外,其余位点的观测杂合度均小于期望杂合度,表明子代群体绝大多数位点处于杂合子缺失状态。(3)红豆树不同家系的遗传多样性存在明显差异,12号家系的遗传多样性水平最高,8号家系则最低。(4)比较发现,天然居群子代的遗传多样性显著或极显著地高于孤立木子代。(5)F统计量和分子方差分析(AMOVA)均表明,红豆树优树子代群体的遗传变异主要存在于家系内,家系间的遗传分化相对较小。(6)相关性分析发现,子代遗传多样性参数与种子性状、子代年高生长量呈显著正相关(r=0.378~0.527)。[结论]较大的红豆树天然居群在维持其子代较高遗传多样性中发挥了重要作用,子代遗传多样性显著影响苗木生长,这为红豆树遗传保育和优良家系选择提供了理论依据。     

Effect of shading by baobab (Adansonia digitata) and néré (Parkia biglobosa) on yields of millet (Pennisetum glaucum) and taro (Colocasia esculenta) in parkland systems in Burkina Faso, West Africa

An experiment was conducted in Nobéré, Burkina Faso to assess the effect of shade of two indigenous fruit trees, Adansonia digitata (Baobab) and Parkia biglobosa (Néré), on a shade-tolerant crop called taro (Colocasia esculenta) in comparison with millet (Pennisetum glaucum) a shade-intolerant crop. Photosynthetically active radiation (PAR) and performance of crops under trees and in the open field were assessed during three cropping seasons. Millet performed better under baobab (806.1?±?121.48?kg?ha^?1) compared to the control plot (595.8?±?83.43?kg?ha^?1) and néré (320.2?±?59.91?kg?ha^?1). In contrast, the yield of taro was higher under néré (4124.0?±?469.05?kg?ha^?1) compared to the control plot (2336.9?±?617.04?kg?ha^?1) and baobab (2738.3?±?595.61?kg?ha^?1). There was a strong relationship between the amount of PAR intercepted by trees and crop yields under trees. As PAR decreased the yield of millet decreased whereas the yield of taro increased. Hence, it was concluded that parkland productivity could be enhanced by cropping taro under néré where light reduction was 83, 56 and 18% in zones A, B and C, respectively. An efficient association of baobab with crops could be the production of taro in zone A and millet in zones B and C where PAR reduction was 62, 38 and 15%, respectively.     

A research approach supporting domestication of Baobab (<Emphasis Type="Italic">Adansonia digitata</Emphasis> L.) in West Africa

The Baobab tree (Adansonia digitata L.) is a key multipurpose species for the African region. In the recent years there has been an extended commercial interest for different A. digitata products. As a spectacular African key species there has been a growing interest from NGO′s and various research groups. A research group, focussing on the following countries Burkina Faso, Mali and Niger, has participated in a concerted research action with cross counter disciplinary cooperation between plant physiology, population genetics, tree breeding, food science, and socioeconomics. This paper presents a review and the way knowledge gaps are being addressed using the above mentioned approach. The overall work was initiated in 2005–2006 when a large collection of A. digitata seeds was carried out in 15 African countries. Fourteen populations were selected in Burkina Faso, Mali, and Niger including more than 400 superior trees, and many of the trees have been selected along with farmers in a participatory process. Studies have been initiated in all countries on geographic variation of growth, adaptive and phenological traits. This includes studies in the nursery, establishment of international provenance series, seed orchards and studies of gene flow and phylogeographic variation with various markers. Specific nursery trials have been established in order to study provenance and progeny performance related to drought stress. Several stress related characteristics are being measured. Preliminary observations showed large morphological variation between African provenances of A. digitata. Food properties of plant parts have been studied within and between populations. This includes studies of total biomass production, vitamin A, B1, B2, and various minerals. The influence of stress will be related to these parameters. Fruits, which are rich in sugar and vitamin C, are used as an ingredient in juice and other foods. Seeds can be used directly as food ingredient or in fermented condition (Maari). The fermentation process was previously poorly described. Therefore, the microorganisms associated with Baobab seeds fermentation have been identified and a starter cultures for control production has been proposed. The efficiency of dissemination of superior A. digitata trees depends on vegetative propagation. Various grafting methods are currently being tested in cooperation with farmers. Micropropagation is tested as well as a method for clone propagation. The accumulated knowledge will be applied for a domestication strategy of A. digitata in Burkina Faso, Mali and Niger. The outcome from this study will be guidelines for protection and management of the germplasm of A. digitata resources.     

Opportunities for domesticating the African baobab (Adansonia digitata L.): multi-trait fruit selection

Among the priority species identified for domestication in the Sahel region of Sub-Sahara Africa is the baobab (Adansonia digitata L.) tree. The quantification of the variation in nutrient content and fruit morphological traits of trees is one of the most important steps in identifying superior planting material for domestication. Ten provenances in Mali covering all the different agro-ecological zones were selected and the fruit morphological traits, vitamin C, calcium, iron and colour were studied. Mean pulp content was 2,149 ± 1,117 , 2,406 ± 776  and 25 ± 17 mg kg^?1 for vitamin C, calcium and iron, respectively. Fruit pulp colour varied from white, creamy to pink and a significant correlation between pulp vitamin C content and reflectance in the green and blue bands was observed. Significant negative correlations were found between rainfall and pulp vitamin C content and between mean annual temperature and fruit and pulp weight and pulp fraction, suggesting that these traits are influenced by the environment. Pulp iron content correlated positively with topsoil sodicity and base saturation. Similarly, pulp vitamin C content correlated positively with topsoil sand fraction. Pulp reflectance in the blue and green bands correlated negatively with topsoil pH water and base saturation, respectively. The variation in nutritive and morphological traits offers the opportunity for selecting plus trees with a combination of desired traits for domestication.     

Mating patterns of the gum arabic tree (<Emphasis Type="Italic">Acacia senegal synonym Senegalia senegal</Emphasis>) in two different habitats

Understanding the variation of mating patterns in disturbed habitats provide insight into the evolutionary potential of plant species and how they persist over time. However, this phenomenon is poorly understood in tropical dryland tree species. In the present study, we investigated how Acacia senegal reproduces in two different environmental contexts in Kenya. Open-pollinated progeny arrays of 10 maternal trees from each environmental context were genotyped using 12 nuclear microsatellite markers. Overall, A. senegal displayed a predominantly allogamous mating pattern. However, higher multilocus outcrossing rate (tm) was found in Lake Bogoria (tm = 1.00) than in Kampi ya Moto population (tm = 0.949). Higher biparental inbreeding (t _m  ? t _s  = 0.116) and correlation of outcrossed paternity (rp = 0.329) was found in Kampi ya Moto than in Lake Bogoria population (t _m  ? t _s  = 0.074, rp = 0.055), showing the occurrence of mating among relatives. Coefficient of coancestry (Θ = 0.208) showed that full-sibs constitute about 21% of the offspring in Kampi ya Moto population compared to about 14% (Θ = 0.136) in Lake Bogoria population. The results demonstrate that low adult tree density of A. senegal may be promoting seed production through consanguineous mating and suggest that man-made disturbance can affect mating patterns of the species. Despite these mating differences, trees from both populations can contribute as seed source for conservational plans, and to support effective genetic conservation and artificial regeneration programs of A. senegal. We suggest collection of seeds from at least 42 and 63 trees in Lake Bogoria and Kampi ya Moto populations, respectively, to retain a progeny array with a total effective population size of 150.     

Effects of selective logging on the mating system and pollen dispersal of Hymenaea courbaril L. (Leguminosae) in the Eastern Brazilian Amazon as revealed by microsatellite analysis

Using nine microsatellite loci, we studied the effects of selective logging on genetic diversity, mating system and pollen dispersal in a population of the tree species Hymenaea courbaril, located in a 546 ha plot in the Tapajós National Forest, Pará State, Brazil. We analyzed 250 offspring (nursery reared seedlings) collected after a logging episode from 14 open-pollinated seed trees. These were compared to 367 seedlings from 20 open-pollinated seed trees previously collected from the pre-logging primary forest. The genetic diversity was significantly lower in the post-logging seed cohort. In contrast to the pre-logging population, significant levels of selfing were detected in the post-logging population (t_m = 0.962, P < 0.05). However, correlated matings were reduced and the effective number of pollen donors almost doubled after harvesting (3.8 against 7.2). Logging also reduced pollen immigration into the plot (from 55% to 38%) and we found no significant correlation between the size of the pollen donors and the number of seeds fathered. Inside the plot, pollen dispersal distance was shorter before logging than after (827 and 952 m, respectively) and the reproductive pollination neighbor area (A_ep) was larger (average of 178 ha). The individual and average variance effective population size within families (ranged from 1.80 to 3.21, average of 2.47) was lower than expected in panmictic populations (N_e = 4). The results indicate that while logging greatly reduced the levels of genetic diversity after logging, it also increased genetic recombination within the population and constrained crossing among related individuals. The results show that low-density tropical tree species such as H. courbaril, when harvested in moderate levels may be resilient to a reduction in the reproductive population and may maintain similar levels of outcrossing and pollen dispersal after logging.     

地理隔离对西南藏区山杨居群遗传结构影响的SRAP分析

采用SRAP分子标记技术,对分布于我国西南3个藏族地区山杨9个居群130个个体进行了遗传结构分析。结果表明,筛选出的7对引物组合共检测到多态性条带(AP)99条,多态性条带百分比(PPB)为59.28%。采用POPGENE软件分析,山杨9个居群平均多态位点百分率(PPB)为33.80%,Nei’s基因多样性指数(H)和Shannon’s信息指数(I)分别为0.130 9和0.213 7,较东北地区山杨具有偏低的遗传多样性。遗传分化系数Gst=0.325 5,表明遗传变异主要存在于居群内个体间。地理距离与遗传距离之间具有弱相关关系(r=0.349,P=94.5%),山脉阻隔效应是导致西南藏族地区山杨居群间遗传分化的主要因素。UPGMA聚类表明,甘孜地区4个居群与迪庆地区的维西居群具有较近的亲缘关系,迪庆地区的德钦、香格里拉居群和昌都地区2个居群的遗传相似度较高。基于西南藏族地区山杨遗传结构分析,建议实施就地保护的同时,建立山杨种质资源库,促进不同居群间的基因交流。