Somatic embryogenesis in pea (Pisum sativum L. and Pisum arvense L.): Diallel analysis and genetic control

Summary Six lines of Pisum were tested in vitro for their ability to produce somatic embryos from apices. Significant quantitative variation was observed. Inheritance of the ability to form somatic embryos was studied using a diallel cross among six different lines. About 80% of the observed genotypic variation was due to additive effects. There is a tendency for the favourable genes to be recessive. It appears that there are two genetic systems involved. Analysis of the distribution of F₃ families means from a cross among two extreme lines seems to indicate the presence of a few major genes in the control of somatic embryogenesis of pea.     

Geneticanalysis of drought stress response in rapeseed (Brassica campestris and B. Napus). II. Yield improvement and the application of selection indices

Summary The expected improvement in grain yield if selection was made for plant characters measured between flowering and maturity was evaluated in populations of rapeseed (Brassica campestris and B. napus) grown in a droughted environment. Drought was commenced at flowering in each species and measurements were made on plants at the commencement of the drought stress, during the stress treatment and at crop maturity.Substantial genetic and phenotypic variation was observed in yield as well as the different morphophysiological determinants of yield. In B. campestris no single parameter was found to be a suitable alternative selection criterion to yield since the correlated responses in yield if selection was for another character was lower than if selection was for yield alone. By the use of a selection index however, joint selection for yield, as well as harvest index, 1000 seed weight and seeds per pod, was expected to be 20% more effective than direct selection for yield under drought. In the B. napus population direct selection for flowering time or for harvest index was predicted to result in a genetic advance in yield equal to or greater than that obtained by direct selection for yield, whereas joint selection for flowering time and yield should result in a 16% greater yield increase. Selection for increased yield in these populations grown in droughted conditions is discussed.     

Response of a new IR50/Moroberekan recombinant inbred population of rice (Oryza sativa L.) from an indica × japonica cross for growth and yield traits under aerobic conditions

Genetic variability, correlation, path coefficient analysis and test of normality was conducted in an F₈ recombinant inbred aerobic rice population developed by single seed descent method to evaluate its potential as a mapping population. Estimates of genotypic variance, phenotypic variance, genotypic coefficient of variance (GCV), phenotypic coefficient of variance (PCV), heritability in the broad sense (H) and expected genetic advance at 5% selection index (GA) for grain yield and other attributing characters were computed. In all the cases, PCV was higher than GCV indicating the influence of environment on the characters. High heritability coupled with high GA was observed for several plant traits; number of tillers, plant height, total number of spikelets panicle⁻¹, biomass plant⁻¹, straw weight, harvest index and grain yield plant⁻¹ and hence offered good scope for selection. Grain yield plant⁻¹ was found to be positively correlated with plant height, number of tillers, panicle length, panicle exsertion, number of panicles plant⁻¹, single panicle weight, test weight, number of fertile spikelets panicle⁻¹, straw weight, biomass plant⁻¹, harvest index and grain breadth both at genotypic and phenotypic levels. Harvest index exerted maximum positive direct effect, followed by biomass plant⁻¹ and straw weight on grain yield plant⁻¹ at phenotypic level. Shapiro-Wilks “W test of normality” indicated that the population was skewed towards female parent IR50 for some traits and for some others towards Moroberekan, the male parent. Most of the characters that showed skewness were platykurtic with a kurtosis value of less than 3.     

In vitro screening of strawberry plants for cold resistance

Formation of embryo autonomy of strawberry, plant regeneration fro membryo components, plant freezing conditions in vitro and the possibility to differentiate objectively genotypes by freezing them in vitro and in vivo were studied to create strawberry screening technology in vitro for cold resistance. It was established that autonomy of strawberry embryos manifests itself not earlier than on 14–16^th day after pollination and full autonomy is reached on 20–22^nd day. Plants regenerated from 26 days old embryos grew most intensively. At the highest rate strawberry plants regenerated from an isolated embryo axis on MS medium without phytohormones, and from rescued cotyledons x on the medium with 1.0 BA and 0.5 NAA. The temperature interval, at which genotypes differentiated according to cold resistance in vitro, was -8 to 12 ^°C. Differentiation of strawberry genotypes according to this character conformed to their differentiation in vivo, provided hardening proceeded not less than 21 days. The correlation between cold resistance in vitro and in vivo reached 0.93. Domination of cold resistance manifested itself in strawberry seedlings from various crossing combinations. This revised version was published online in August 2006 with corrections to the Cover Date.     

The assessment of in vitro characters and their influence on the success rates of doubled haploid production in barley

Summary A assessment of in vitro characters: embryo size, differentiation stage and germination time of haploid embryos, was carried out with a view to developing a selection procedure to increase the efficiency of doubled haploid (DH) production using the Hordeum bulbosum system. The differentiation stage of haploid embryos at the time of excision was found to be the most promising character for selection. In the two spring crosses examined 55% of excised embryos were undifferentiated and 45% were differentiated, with overall success rates, in terms of the percentage of DHs produced, of 7.91% and 25.16%, respectively. 17% of excised embryos produced callus. These embryos performed poorly in terms of regeneration and subsequent growth. It is suggested that only differentiated non-callusing embryos are maintained in order to maximize the efficiency of DH production. It is also shown that the overall success rate depends not only on initial stages such as seed setting but also on genotypic differences in response to colchicine treatment at later stages.     

Genotypic variation for in vitro criteria and relationships with in vivo digestibility in forage maize hybrids

The aim of this work was to study the genotypic variation for in vitro digestibility and composition traits within maize elite hybrids, and their relationships with in vivo digestibility traits. Experiments using 58 maize hybrids were carried out in four French environments in 1995. Near-infrared reflectance spectroscopy (NIRS) was used to determine in vitro digestibility (whole-plant and cell-wall digestibility) and biochemical composition (starch, soluble carbohydrates, neutral detergent fibre, acid detergent lignin, protein and ash contents). The 58 hybrids were also studied at INRA, Lusignan, France, within a long-term experiment to determine their in vivo digestibility of organic matter and of crude fibre using standard sheep. Genotypic variation was studied and relationships between hybrid mean values for in vitro parameters and in vivo digestibilities were examined. For evaluation and breeding purposes, it is possible to discriminate maize elite hybrids according to their digestibility, especially for discarding low-value genotypes. in vitro parameters, such as in vitro whole-plant digestibility and cell-wall digestibility associated with cell-wall content, can be routinely investigated with NIRS. Accurate criteria that are satisfactorily relevant to reference data of in vivo digestibility evaluated with standard sheep can be obtained to explain about 60% of the variation.     

Somatic in vitro culture response of Lolium perenne L.: genetic effects and correlations with anther culture

Summary Genotypic effects on callus induction and plant regeneration in callus, suspension and protoplast culture, and their correlations with both phenotypic and GCA-values for anther culture response, were studied using 21 genotypes of perennial ryegrass. Differences between genotypes accounted for approximately 40% of the total variation for callus induction and initial callus growth, and 59 and 83% of the variation in callus culture for regeneration percentage and percentage of green plants. Effects of genotypes were less pronounced in suspension culture, where suspensions from the same genotype often behaved differently. Some suspension cultures retained their capacity for green plant regeneration for almost two years, repeatedly producing 80–100% green regenerants during this period. Genotypes with high regeneration percentage and a large proportion of green plants from callus culture were also superior in suspension culture for both regeneration performance and longevity. Regeneration percentage and percentage of green plants were uncorrelated, and probably under different genetic control. While capacity for green plant formation from the different genotypes showed no correlation between anther culture and somatic in vitro culture, a positive correlation was observed between the regeneration percentages in somatic in vitro culture and anther culture (r=0.44^*–0.85^***), suggesting some common genetic control of the two systems.     

Interrelationships of allozymes and ribosomal DNA alleles in wild barley

Summary A genetic resources preservation program led to an in vitro germplasm collection of yam (Dioscorea spp.), obtained by nodal cutting and maintained under slow growth conditions with ((Knop, 1865) in George & Sherrington, 1984) modified medium. The collection comprises accessions of 14 species from Africa and Asia, including edible varieties from the humid intertropical areas, viz 10 wild species (D. abyssinica, D. bulbifera, D. burkilliana, D. dumetorum, D. hirtiflora, D. mangenotiana, D. minutiflora, D. praehensilis, D. schimperana, D. togoensis), 5 edible species (D. alata, D. bulbifera, D. cayenensis-D. rotundata complex, D. dumetorum and D. esculenta) and 1 interspecific hybrid (D. cayenensis-D. rotundata complex, cv. Krengle x D. praehensilis). Three factors that may influence the success in transfer from the in vivo to the in vitro conditions have been studied. These are: the type of introducted material (nodal cutting fragments, seeds and exchanged microplants), the introduction date and the genotype. Some significant differences in success were due to the type of introduced material, whereas the introduction date had no effect. On the other hand, some species showed a greater success in the transfer from the in vivo to the in vitro conditions than others. The three tuberization types (basal tuberization, aerial tuberization and boulage (tuberization without vegetative development) phenomena), according to species, are discussed.     

Variation in Cicer arietinum L.

Summary A collection of populations and cultivars of Cicer arietinum L. were studied to obtain phenotypic, genotypic and environmental correlation coefficients, and broad sense heritabilities. Principal Component Analyses were performed on phenotypic, genotypic and environmental matrices. Data and phase obtained on a pure morphological basis, as well as on quantitative genetic studies and geographical distribution support the existence of two complexes within the cultivated chickpea, macrosperma and microsperma. These taxa differ in a cluster of complex characters associated with seed. pod and leaf morphology, and they differ in distribution. There is no taxonomic basis to treat these as subspecies. We propose to include C. reticulatum Lad., the wild chickpea, as a subspecies of C. arietinum, with the cultivated kinds recognized as subspecies arietinum. Race macrosperma was derived from race microsperma through selection during relatively recent times of the evolutionary history of the chickpea.     

Symbiotic variability in Vicia faba. 3. Genetic effects of host plant,rhizobium strain and of host × strain interaction

Summary Six Vicia faba populations were grown in all possible combinations with six Rhizobium leguminosarum strains in order to estimate the relative importance of the three genetic components of symbiotic variability. Additive genetic effects of host genotype and rhizobium genotype accounted for only 8.9% and 11.8% of the total phenotypic variation. Non-additive variation attriabutable to specific host genotype × rhizobium genotype interactions was by far the largest component of variation and accounted for 73.8% of phenotypic differences. Therefore the greatest improvement in symbiotic nitrogen fixation is likely to arise from simultaneous selection of both symbionts.     

Genetic diversity for agronomic and fiber traits in day-neutral accessions derived from primitive cotton germplasm

Upland cotton (Gossypium hirsutumL) is an important crop that is cultivated in warm climates through-out the world. Agronomic performance and fiber quality must continually be improved if cotton is to maintain economic viability. Primitive ancestors of cotton contain diversity for trait improvement; however, many of these accessions have a short-day flowering response (photoperiodic) and are not readily useable in breeding programs. In this study, 114 day-neutral derived primitive germplasm lines were evaluated in field trials for two years. Agronomic and fiber trait data were collected and analyzed. Variance components, genotypic values, and genotypic correlations were calculated. Genotypic effects for all traits studied made significant contributions to the phenotypic variation indicating genetic diversity among these lines. The predicted genotypic values showed a wide range of variation for agronomic and fiber traits. Weak genotypic correlations were found between yield and 2.5% span length and fiber strength, two important fiber traits. Although these day-neutral derived accessions had lower lint percentage, they had improved fiber length, strength, micronaire, and comparable yields with two commercial cultivars. Thus, these day-neutral derived accessions are sources of genetic variation that when used in breeding programs offer the potential to improve important traits and expand genetic diversity.Contribution of the USDA-ARS in cooperation with the Mississippi Agric. and Forestry Exp. Stn. Mention of trademark, proprietary product, or vendor does not constitute a guarantee or warranty of the product by USDA, ARS and does not imply its approval to the exclusion of other products or vendors that may also be suitable.     

Analysis of quantitative variability for seed yield and related characters in Lotus corniculatus L. cv. Leo

Summary Quantitative variability for seed yield and six other characters was analysed in Lotus corniculatus L. cv. Leo. The material consisted of 144 polycross progenies and 100 parents.Wide variability existed for all characters. The characters with the greatest variability were seed yield, forage grading and plant height. The polycross progeny test was employed to study the general combining ability of the parents. Highly significant differences existed for all seven characters under study.Parent-offspring genotypic and phenotypic correlations were high and significant for all characters except genotypic correlations for seed yield and seeds per pod. High h² values (broad sense) were obtained for seed size and days to flowering. Traits with moderate to high h² were seed yield (71% in parents, 64% in progenies), plant height, forage grading, and seeds per pod. The character pods per inflorescence had the lowest h².Positive estimates of % MathType!MTEF!2!1!+-% feaafiart1ev1aaatCvAUfeBSjuyZL2yd9gzLbvyNv2CaerbuLwBLn% hiov2DGi1BTfMBaeXatLxBI9gBaerbd9wDYLwzYbItLDharqqtubsr% 4rNCHbGeaGak0dh9WrFfpC0xh9vqqj-hEeeu0xXdbba9frFj0-OqFf% ea0dXdd9vqaq-JfrVkFHe9pgea0dXdar-Jb9hs0dXdbPYxe9vr0-vr% 0-vqpWqaaeaabiGaaiaacaqabeaadaqaaqaaaOqaaiqabo8agaqcaK% aaavaabeqaceaaaeaacaqGYaaabaGaaeiraaaaaaa!3A89!\[{\text{\hat \sigma }}\begin{array}{*{20}c} {\text{2}} \\ {\text{D}} \\ \end{array} \] were obtained only for seed size. The ratio of dominance variance to additive variance indicated partial dominance for this character. Except for seed yield, in all other cases these estimates had very high sampling errors. In all cases except pods per inflorescence and seeds per pod high positive estimates of % MathType!MTEF!2!1!+-% feaafiart1ev1aaatCvAUfeBSjuyZL2yd9gzLbvyNv2CaerbuLwBLn% hiov2DGi1BTfMBaeXatLxBI9gBaerbd9wDYLwzYbItLDharqqtubsr% 4rNCHbGeaGak0dh9WrFfpC0xh9vqqj-hEeeu0xXdbba9frFj0-OqFf% ea0dXdd9vqaq-JfrVkFHe9pgea0dXdar-Jb9hs0dXdbPYxe9vr0-vr% 0-vqpWqaaeaabiGaaiaacaqabeaadaqaaqaaaOqaaiqbeo8aZzaaja% qbaeqabiqaaaqcaauaaiaaikdaaKaaGeaacaqGbbaaaaaa!3B30!\[\hat \sigma \begin{array}{*{20}c} 2 \\ {\text{A}} \\ \end{array} \] were obtained.The data indicated that it may be possible to simultaneously improve seed yield and maintain forage yield. Seed yield had positive and significant associations with seed size, seeds per pod and pods per inflorescence. The associations of days to flowering with forage grading (negative) and with pods per inflorescence (positive) were also significant.     

Transfer of resistance to Verticillium dahliae Kleb. from Solanum torvum S.W. into potato (Solanum tuberosum L.) by protoplast electrofusion

Summary Interspecific somatic hybrid plants were regenerated after electrofusion of mesophyll protoplasts with the objective of transferring resistance to Verticillium dahliae from Solanum torvum into potato. Early selection of the putative hybrids was based on differences in cultural behaviour of the parental and hybrid calli (particularly the ability of the latter to regenerate early) in combination with morphological markers. Four putative hybrids were recovered from hundreds of calli, probably resulting from complementation of the two parental genomes. The regenerates were tetraploids (2n=4×=48 chromosomes) and exhibited intermediate traits including leaf form, plant morphology and the presence of anthocyanin. The hybrid nature of the four selected plants was confirmed by examining isoenzyme patterns for isocitrate dehydrogenase (Idh), malate dehydrogenase (Mdh), phosphoglucoisomerase (Pgi) and 6-phosphogluconate dehydrogenase (6-Pgd). While the hybrid plants rooted readily and grew vigorously under in vitro conditions, in the greenhouse their development and growth were retarded by difficulties in rooting. When grafted on potato or S. torvum rootstocks, the hybrid plants recovered normal development and growth. Again, they exhibited intermediate morphological traits. Tests for resistance realized in vitro with medium containing 50% Verticillium wilt filtrate showed that all the somatic hybrids were resistant to the fungus filtrate.     

Interrelationships between cropping systems for pod and seed quality components and breeding implications in common bean

Breeding programmes in common bean (Phaseolus vulgaris L.) have mainly focused on performance under monoculture conditions. Interactions among cultivars and cropping systems do occur and genotypes bred for pure cropping may not be suitable for intercropping. This study was undertaken to obtain estimates of genetic parameters of quality traits for bush bean landraces grown in two cropping systems, and the interrelationships of these traits between pure cropping and intercropping with maize (Zea mays L.). Field experiments were conducted at two locations for two years. Expression of most traits was not strongly influenced by genotype × environment interactions. Heritability estimates were similar in both cropping systems for most pod and seed quality traits. Positive correlations were observed between pure cropping and intercropping for pod characters (weight, length, width and texture) and seed characters (dry and imbided weight, length, hardness, coat proportion, water absorption and crude protein). Use of a selection index is suggested for breeding for seed size, water absorption,coat proportion and crude protein for both cropping systems. However, larger gains would be expected in pure cropping for most traits. Bean accessions PHA-0267, PHA-0285, PHA-0286 and PHA-0299 should be used for developing acceptable culinary and high protein breeding lines for either cropping system. This revised version was published online in August 2006 with corrections to the Cover Date.     

Estimation,interrelationships and repeatability of genetic variability parameters in spring safflower using multi-environment trial data

The present investigation was carried out to estimate the interrelationships and repeatabilities of various variability parameters, i.e., genotypic (σ²g) and phenotypic (σ²p) variances, genotypic (GCV) and phenotypic (PCV) coefficients of variation, broad-sense heritability (h_b²), genetic advance (GA), and genetic gain (GG), using data derived from a number of plant characters [seed yield (SY), days to heading (DH) and maturity (DM), plant height (PH), and thousand kernel weight (TKW)] of 17 spring safflower genotypes grown in 27 environments in Iran during 2003–2005. The analysis of variance for the five characters revealed significant differences among the genotypes in most of the environments, indicating a very high variability within the genotype. High genotypic and phenotypic variances in the quantitative traits, particularly for SY, were markers of increased success. A close correlation between GCV and PCV was observed for all the traits, indicating that all of the characters were less influenced by the environment and that the variability which exists in these characters is under genetic influence; however, the relatively higher values of PCV indicate the predominant role of environment. High expected genetic advances were observed for SY, but this trait showed large fluctuations in different environments (97.4%). High and low mean values of heritability were observed for DH (74.3%) and SY (59.7%), respectively, whereas high and low mean values of genetic gain were found for SY (60.3%) and DM (4.2%), respectively. High heritability coupled with low GA as a percentage of the mean was observed for DH and MD, whereas moderate heritability with moderate GA as a percentage of the mean was exhibited for SY. Analysis of correlation among the parameters showed that they were strongly and constantly correlated with each other, but none of them were consistently well correlated with the heritability parameter (h_b²). Based on estimates of the genetic variability parameters within each trial, the ranking of genotypes in the low-performance subset for all traits differed from that in the high-performance subset. This result indicates poor repeatability for the genetic variability parameters. The estimates of the parameters in the multi-year trials were almost constant and repeatable, whereas the responses over years showed poor repeatability.     

Comparison of diploid and tetraploid potato families derived from Solanum phureja x dihaploid S. tuberosum hybrids and their vegetatively doubled counterparts

Summary To determine whether in potatoes the tetraploid level is preferable to the diploid level, especially regarding tuber yield, four diploid (2n=2×=24) Solanum phureja x dihaploid S. tuberosum hybrid parents and their vegetatively doubled, tetraploid (2n=4×=48) counterparts were intermated, which resulted in two F₁ hybrid families at both levels of ploidy. The parents and clones of the F₁ families and their offspring were used in crosses in such a way that in addition Sib₁, Sib₂, F₁×Sib₁, BC₁ and Sib₁×Sib₁ families were produced. Of the first clonal generation of the 12 2 x families and their 12 counterpart 4 x families two tubers per clone were planted in three replications in a field experiment at Sturgeon Bay in 1969; of the parents six tubers were planted in each replication. Data were recorded on 16 characters, including plant height at four different times.The ANOVA's showed significant clone effects within each family for all characters. Computed from all family means as well as from the family means per ploidy level, differences due to family were also significant for all characters except one.As at the 2 x level and at the 4 x level of ploidy the mean phenotypic correlations between characters were of similar magnitude, it is concluded that they are independent of ploidy level.With the exception of eye depth, the mean coefficient of variation was greater at the 2 x than at the 4 x level of ploidy, indicating the greatest response to selection for those characters at the 2 x level. From the differences in family means between the 4 x and the 2 x level of ploidy it was apparent that the 4 x families generally had significantly taller plants, later maturity, fewer tubers, higher mean tuber weight, more tuber yield and more dry matter yield than their counterpart 2 x families. In contrast, the 4 x parents had on the average shorter plants, lower mean tuber weight, much lower tuber yield and lower dry matter yield than their 2 x counterparts.The phenotypic correlation and Spearman's rank correlation between the family means of the 2 x and the 4 x level of ploidy were positive for almost all characters and significant for nearly half of them.From the results it is concluded that 1. in potatoes the 4 x level of ploidy is preferable to the 2 x level, and 2. the performance of 4 x families is predictable from the performance of their counterpart 2 x families.Based on results mentioned in the literature and on the present results, a continued use of S. tuberosum dihaploids in potato breeding needs to be dissuaded.     

Factors affecting in vitro flowering and fruiting of green pea (Pisum sativum L.)

Multiple shoots were efficiently regenerated from cotyledonary node and shoot tip explants of Pisum sativum within 15 days on MS medium containing B₅ vitamins and supplelmented with 2.0 mgl^-1 6-benzylaminopurine. The elongated shoots produced on the same medium were excised and transferred to MS medium containing half strength ammonium nitrate (8.25 gml^-1) and supplemented with auxins (indole-3-butyric acid or naphthalene acetic acid) either alone or in combinations with gibberellic acid. Rooting and flowering were observed on the 7th and 15th day after their transfer to rooting medium. The flowers self-fertilised in vitro and produced mature pods within 25 days of rooting. These seeds were germinable both in vitro and in vivo. In vitro seeds sown in pots under field conditions developed into flowering plants, and subsequently produced pods with viable seeds. This revised version was published online in July 2006 with corrections to the Cover Date.     

QTL analysis and mapping of pre-harvest sprouting resistance in Sorghum

One of the most important agronomic problems in the production of sorghum [Sorghum bicolor (L.) Moench] in humid climates is pre-harvest sprouting (PHS). A molecular linkage map was developed using 112molecular markers in an F₂ mapping population derived from a cross between IS 9530 (high resistance to PHS) and Redland B2 (susceptible to PHS). Two year phenotypic data was obtained. By means of interval mapping analysis, two significant QTL were detected in two different linkage groups with LOD scores of 8.77and 4.39. Each of these two QTL individually explained approximately 53% of the phenotypic variance, but together, in a two-QTL model, they explained 83% of the phenotypic variance with a LOD score of 12.37.These results were corroborated by a one-way ANOVA in which the four flanking markers of the most likely QTL positions displayed highly significant values in theF-test, and significant variation in trait expression was associated with marker genotypic classes. The four markers with highest effect in the one-way ANOVA were also detected in the second year replication of the F₂ population, and significant genotype × environment interactions was observed. The putative relationship between PHS resistance in sorghum and the maize Vp1 gene is also discussed. This revised version was published online in July 2006 with corrections to the Cover Date.     

Variation in utilization efficiency and tolerance to reduced water and nitrogen supply among wild and cultivated barleys

Broad genotypic variation in the response to low soilmoisture and reduced nitrogen supply was found amongthe wild Hordeum spontaneum accessions and thelandraces and modern cultivars of H. vulgare ofdifferent geographic origin. Measurements at the endof vegetative growth in plants grown in soil culturesrevealed genotypically specific responses to the usedenvironmental factors. Cultivars and breeding linesfrom Syria and Ethiopian landraces combined bothdrought resistance and tolerance to low nitrogen. TheSyrian barleys were also distinguished by a highnitrogen utilization efficiency (NUE) under low Nnutrition. European cultivars indicated a pooradaptation to N shortage, but some of them wereresistant to soil drought. No stress resistant barleyswere found among the wild accessions and Sardinianlandraces. Genotypic differences in the relativevalues of NUE and water use efficiency were associatedwith low N-tolerance. Some Syrian selections,Ethiopian landraces and the modern German cv. Maresiwere found to be most drought resistant. Maintenanceof a relatively high photosynthetic activity of theuppermost leaves was associated with droughtresistance. As far as concerning with the vegetativegrowth phase, the modern Syrian germplasm andEthiopian landraces may be recommended as donors ofadaptative characters for local barley breeding.     

Identification of molecular markers associated with sweet potato resistance to sweet potato virus disease in Kenya

Sweet potato virus disease (SPVD), a result of the co-infection of whitefly transmitted Sweet potato chlorotic stunt virus (genus Crinivirus, family Closteroviridae) and the aphid transmitted Sweet potato feathery mottle virus (genus Potyvirus, family Potyviridae), is the most destructive disease of sweet potato in East Africa. A study was conducted to establish if genotypes identified as resistant or susceptible to SPVD in Kenya could be distinguished using molecular markers. A total of 47 unrelated sweet potato genotypes were selected from germplasm collections and classified into two phenotypic groups as resistant or susceptible to SPVD. Genotype selection was based on disease severity or days to symptom development in plants following graft inoculation. Amplified fragment length polymorphism (AFLP) marker profiles were generated for each individual and used in association studies to identify markers suitable for classifying the two pre-defined phenotypic groups. Analysis of molecular variance showed significant (P < 0.002) variation between the two groups using 206 polymorphic AFLP markers. Discriminant analysis and logistic regression statistical methods were used to select informative markers, and to develop models that would classify the two phenotypic groups. A training set of 30 genotypes consisting of 15 resistant and 15 susceptible were used to develop classification models. The remaining 17 genotypes were used as a test set. Four markers, which gave 100% correct classification of the training set and 94% correct classification of the test set, were selected by both statistical methods.