Genetic analyses of low photoperiod sensitivity of rice cultivars from the northernmost regions of Japan

The genetic factors controlling the extremely low photoperiod sensitivity (PS) of rice culyibstd from the northernmost regions of Japan were studied using 26 cultivars from the Hokkaido district (42 N 45 N). They were grown under 10-h and 24-h daylengths, and their PS. expressed by the difference between the days to heading under these daylengths, was estimated. The genetic factors responsible for the intervarietal difference in PS were then analysed under 10-h, 14-h and 24-h daylengths using the progenies from crosses between Hokkaido cultivars. These results showed that a recessive gene, se-9(t), drastically reduced PS under a 24-h daylength and that several genes, including se9(t), determined the extremely low PS of the cultivars from the northernmost regions.     

Genetic dissection of black grain rice by the development of a near isogenic line

Rice (Oryza sativa L.) can produce black grains as well as white. In black rice, the pericarp of the grain accumulates anthocyanin, which has antioxidant activity and is beneficial to human health. We developed a black rice introgression line in the genetic background of Oryza sativa L. ‘Koshihikari’, which is a leading variety in Japan. We used Oryza sativa L. ‘Hong Xie Nuo’ as the donor parent and backcrossed with ‘Koshihikari’ four times, resulting in a near isogenic line (NIL) for black grains. A whole genome survey of the introgression line using DNA markers suggested that three regions, on chromosomes 1, 3 and 4 are associated with black pigmentation. The locus on chromosome 3 has not been identified previously. A mapping analysis with 546 F₂ plants derived from a cross between the black rice NIL and ‘Koshihikari’ was evaluated. The results indicated that all three loci are essential for black pigmentation. We named these loci Kala1, Kala3 and Kala4. The black rice NIL was evaluated for eating quality and general agronomic traits. The eating quality was greatly superior to that of ‘Okunomurasaki’, an existing black rice variety. The isogenicity of the black rice NIL to ‘Koshihikari’ was very high.     

Genetic analysis for protein content in indica rice

Analysis of genetic main effects and GE interaction effects for protein content (PC) and protein index (PI) of indica rice (Oryza sativa L.) was conducted for two year experimental data by using a genetic model for quantitative traits of seeds in cereal crops. Nine cytoplasmic male sterile lines or maintainers as female parents and five restorer lines as male parents were used for a NC II mating design in 1995 and 1996. The results indicated that PC and PI traits were simultaneously controlled by genetic main effects as well as GE interaction effects. For PC and PI of rice, the embryo interaction effects (embryo additive and dominance interaction effects) were important as effects of triploid endosperm, cytoplasm and diploid maternal plant. The estimates of narrow-sense heritability for PC and PI of rice were 85.3% and 77.9%, respectively. The interaction heritability was found to be larger than the general heritability for PC and PI of rice. Significant relationships for components of different genetic effects between PC and PI were found. The GE interaction covariances tended to be positive. This revised version was published online in July 2006 with corrections to the Cover Date.     

Genetic analysis of the response to day length in rice

Summary Inheritance of time-to-flowering, plant height, tiller number, spikelet number and flag leaf area was studied under day lengths of 10 and 14 hours in a diallel cross of six rice varieties. Early flowering was dominant to late in both environments but the varieties flowering early in one environment were late flowering in the other. Analysis of F₁ and F₂ data from the cross of Heenati-310 x IR-8 suggested a digenic control of early flowering in short days with complementary interaction. It is considered that while relatively few genes control time-to-flowering in rice a previous proposal that separate genes for time-to-flowering and photoperiod sensitivity exist is unnecessary on present evidence. Whereas culm length, tiller number and flag leaf area were increased by longer days, the number of spikelets per panicle was reduced. The length of the panicle was little affected by changing environment, and throughout certain characters and varieties, such as tiller number in I-geo-tze, were more stable than others. Varietal crosses of Heenati-310 x IR-8 and Tainan x MI-273(m) appeared to give high yield potential.     

Genetic relatedness among eastern North American blackberry cultivars based on pedigree analysis

Blackberry genetic relationships (Rubus subgenus Rubus Watson) have not been thoroughly studied. The University of Arkansas maintains one of the largest blackberry-breeding programs in the world and thus, in-depth knowledge of the cultivars released from the program and others instrumental in their lineages can aid in breeding endeavors. Pedigrees of 32 cultivars were traced to their founding clones. Genetic contribution (GC), maximum potential similarity (MPS), inbreeding coefficient, and coefficients of relationship (CR) were calculated for all genotypes. Nineteen founding clones contributed to the 32 cultivars, ranging from <1% to 19%. The top three founding clones for mean GC conferred nearly 50% to the 32 cultivars in this study, suggesting a somewhat narrow genetic base. Calculations for MPS ranged from complete similarity (1.00) to 0.00. Individual inbreeding coefficients ranged from 0.00 to 0.25. The coefficient of relationship was used as a method of determining genetic relatedness and ranged from 0.00 to 0.74. University of Arkansas cultivars had the highest MPS and CR in the study. This may be attributed to more generations of hybridization than the other cultivars. The MPS provided some comparable results to those of RFLP and RAPD molecular studies, but CR did not. The rather narrow genetic base of eastern North American blackberry cultivars does not create an imminent, significant concern for loss of diversity. However, more diverse germplasm should be infused for continuation of heterogeneity.     

Genetic analysis of glume colour in common wheat cultivars from the former USSR

Genotypes for the glume colour character have been studied in 27 cultivars of common wheat (Triticum aestivum L.) originated from old landraces, and 1 specimen of T. petropavlovskyi Udacz. et Migusch. by means of analysis of the F₂ populations. The following tester lines have been used: white-glumed ‘Novosibirskaya 67’ ‘Diamant I’, and ‘Federation’, carrying the Rg1 gene alone; lines RL5405 and near-isogenic ‘Saratovskaya 29’ *5 (T. timopheevii Zhuk./T. tauschii (Coss.) Schmal.), carrying Rg2; line (1A ‘CS’ × ‘Strela’) with Rg3. The red glume colour in 21 cultivars of Triticum aestivum and in the accession of T. petropavlovskyi has been shown to be determined by the single gene Rg1, located on chromosome 1B. Five cultivars carrying the gene Rg3 for red glumes on chromosome 1A have been revealed. The cultivars ‘Zhnitsa’ and ‘Iskra’ carry the gene Rg3 alone. The red glume colour in the cultivars ‘Milturum 321’, ‘Milturum 2078’, ‘Sredneural'skaya’ is controlled by two genes, Rg1 and Rg3. In two common wheat cultivars, ‘Sarrubra’ and ‘Krasnoyarskaya 1103’ the red glume colour is determined by Rg1, inherited from local populations (‘Turka’ and ‘Kubanka’ respectively) of tetraploid wheat T. durum Desf. var. hordeiforme Host. Wide occurrence of the Rg1 gene in common wheat has been confirmed. On the contrary, none of the investigated varieties carries the gene Rg2. This revised version was published online in July 2006 with corrections to the Cover Date.     

Comparative analysis of the physicochemical properties of rice endosperm from cultivars with diverse amylose content

The physicochemical properties of five rice cultivars (Hwayoungbyeo, Goamibyeo, Yoosojung, LGC-soft, and Manmibyeo), varying in amylose content, were investigated. Morphological properties differ among cultivars depending on the amylose content of starch. High amino acid content was found in LGC-soft and Manmibyeo (low-amylose rice) while Goamibyeo (high-amylose rice) exhibited high mineral and sugar content. No substantial difference in fatty acid composition was observed among cultivars. LGC-soft and Manmibyeo showed faster hydrolysis rate, low pasting temperature, and higher peak and breakdown viscosities than that of the other cultivars. This study illustrates the wide variation in the physicochemical properties of the rice cultivars analyzed. The results could serve as baseline information for plant breeders and assist food processors in quality evaluation of rice with specific characteristics suitable for specialty food processing.     

Measuring field resistance of cabbage cultivars to black rot

Summary Disease progress and gradient curves of black rot on cabbage were evaluated in field plots of the cultivars Bartolo, Erdeno, Perfect Ball, and Roxy in The Netherlands during 1991 and 1992. Plots were inoculated by single sources in the centre of each plot. Individual plants were examined for disease incidence and severity. Disease progress was described by the Gompertz model. The overall measure of absolute rate (disease progress rate r multiplied with maximum disease intensity K) was used to compare cultivar effects on disease progress. Disease gradients were described by the negative exponential model. The percentile distance (distance from the source at which disease intensity reached 1% of the empirical maximum disease intensity) was used to compare cultivar effects on disease spread. Disease severity is more sensitive than disease incidence to calculate the disease progress and spread of black rot. Measures of progress and gradient were about equally effective to screen cultivars for field resistance to black rot. Perfect Ball was the most susceptible, Erdeno and Bartolo were intermediate and Roxy was the most resistant for incidence and severity measures. Increased levels of field resistance reduced the development of black rot in time and in space. Field resistance of black rot is thought to be composed of several mechanisms. Microplots provide a good instrument for the assessment of small differences in field resistance, expressed equally well in disease progress as in disease gradient curves.     

Genetic analysis of a novel dominant rice dwarf mutant 986083D

This study was to determine the agronomic and genetic characteristics of a novel rice dominant dwarf mutant 986083D (japonica) and its potential in breeding. 986083D derived from the anther culture of an autotetraploid indica/japonica hybrid and its progeny segregated into normal and dwarf plants. Homozygous and heterozygous 986083D plants looked similar phenotypically, showing shortened stature, erect leaves, more tillers and poor fertility. The segregation ratio of dwarf to normal plants fit the expected 3:1 by χ²-test in 77 out of 88 tested lines. Crosses between homozygous 986083D and eight other rice varieties had uniform semi-dwarf F₁ plants. The F₁ plants from crosses between heterozygous 986083D and five other varieties had normal and semi-dwarf plants close to the expected ratio of 1:1. The reduction of plant height in F₁ plants ranged from 40.0 to 53.5% in a subtropical environment and from 37.5 to 48.2% in a temperate environment. 986083D showed moderate sensitivity to exogenously applied GA₃ in terms of elongation of shoots and induction of α-amylase activity in the endosperm. Linkage analysis showed that the dominant dwarf gene (designated as Dx) in 986083D was not allelic to D53. Dx was roughly mapped to the short arm of chromosome 8. All results showed that 986083D was a novel mutant controlled by single dominant gene, providing a valuable material in rice breeding. Ruizhen Qin, Yang Qiu contributed equally to this work.     

Genetic analysis of ion-beam induced extremely late heading mutants in rice

Two extremely late heading mutants were induced by ion beam irradiation in rice cultivar ‘Taichung 65’: KGM26 and KGM27. The F₂ populations from the cross between the two mutants and Taichung 65 showed clear 3 early: 1 late segregation, suggesting control of late heading by a recessive gene. The genes identified in KGM26 and KGM27 were respectively designated as FLT1 and FLT2. The two genes were mapped using the crosses between the two mutants and an Indica cultivar ‘Kasalath’. FLT1 was located on the distal end of the short arm of chromosome 8. FLT2 was located around the centromere of chromosome 9. FLT1 might share the same locus as EHD3 because their chromosomal location is overlapping. FLT2 is inferred to be a new gene because no gene with a comparable effect to that of this gene was mapped near the centromere of chromosome 9. In crosses with Kasalath, homozygotes of late heading mutant genes showed a large variation of days to heading, suggesting that other genes affected late heading mutant genes.     

Genetic analysis of a null-allele for lipoxygenase-3 in rice seeds

Summary Lipoxygenase (LOX) catalyzes peroxidation of lipids in rice grains and is related to the formation of volatile compounds. We report on the mode of inheritance of LOX-3 in the rice variety Daw Dam. This variety lacks the LOX-3 (Suzuki et al., 1993), which is a major isozyme in rice seeds. The inheritance of LOX-3 in rice seeds was determined by crossing Daw Dam with rice cultivars having normal LOX-3 activity. The distribution of F₂ phenotypes for the presence and absence of LOX-3 from selfed F₁ plants fitted the ratio 3:1. Segregation ratio of the B₁F₁ generation gave a good fit to 1 presence of LOX-3: 1 absence. These data support the hypothesis that the lack of LOX-3 is recessive to the presence of LOX-3, and we conclude that the absence of LOX-3 is inherited as a single recessive trait. We discuss the possible use of the LOX-3 less mutation in relation to volatile compounds production in rice grains.Abbreviations mAb monoclonal antibody - LOX lipoxygenase - SDS-PAGE sodium dodecyl sulfate-polyacrylamide gel electrophoresis     

Regeneration and genetic transformation of Spanish rice cultivars using mature embryos

To establish a plant regeneration system from embryogenic callus derived from mature rice embryos, the addition of aminoacids and the effect of two macronutrient solutions MSD and N6D to the basal callus induction medium was tested in three Spanish varieties, Senia, Tebre and Bahia. Aminoacids enhanced the production of embryogenic callus in Tebre and Senia whereas in the case of Bahia, embryogenic callus, which gave rise to a high rate of differentiated shoots, was induced without aminoacids. The macronutrient solution had also to be adjusted for each variety. Pre-regeneration treatment with ABA significantly improved the regeneration rate in all media tested, independently of the media in which the embryogenic callus were induced. In a comparison of growth regulators, BA yielded more shoots than Kin in all varieties whereas the effect of the auxins NAA or IAA was dependent on the variety. Transgenic plants from the three varieties were obtained via an Agrobacterium tumefaciens transformation system, using the optimised culture media. This revised version was published online in July 2006 with corrections to the Cover Date.     

Genetic analysis of ratooning ability of rice (Oryza sativa L.)

Summary Genetic analysis of generation means of F₁, F₂, F₃, F₄, and the parental populations of the cross IR10154-23-3-3A/IR15795-232-3-3-2 for ratooning ability was conducted. Good ratooning ability is a recessive trait. The parents differed by at least two pairs of major genes for ratooning ability. A large proportion of transgressive segregants in F₂ suggested that the expression of ratooning ability is influenced not only by major genes but also by modifiers. Broad-sense heritability estimates computed by different methods ranged from 0.66 to 0.88. Narrow-sense heritability by the F₄–F₃ regression method was 0.39. The heritability estimates were 0.42 and 0.33 by the variance component method. The prevalence of additive x additive type of gene effects along with prominent additive effects imply some scope for selection in the segregating generations. However, non-additive type of gene action also affects the expression of ratooning ability.     

Genetic relationships in cultivars of hop, Humulus lupulus L., determined by RAPD analysis

Random amplified polymorphic DNA (RAPD) was used to evaluate the genetic variability and relationship of 65 hop cultivars from all the major hop-growing regions in the world. Twenty-eight selected random primers used in the RAPD reaction generated an average of 38.6%) polymorphic fragments, which was sufficient to produce 47 different RAPD profiles among the cultivars examined. The level of genetic variability was much higher than previously reported. Genetic similarity was estimated and UPGMA cluster analysis was performed using the RAPD data. Cluster analysis separated the cultivars into genetically related RAPD groups which were compared with pedigree data and grouping of the hop cultivars by essential oil type. The RAPD groups, strongly supported by pedigree data, gave more precise information on the level and distribution of genetic variability within hop cultivars than characterization by essential oils. Cultivars were divided into American and European groups, supporting the distinction between two geo-graphically distinct hop germplasms. Five genetically distinct groups revealed differences within the European germplasm, reflecting past hop breeding practices which have been adopted in different regions. The use of RAPD markers for hop germplasm characterization and genetic diversity study is discussed.     

Variations of the vascular bundle system in Asian rice cultivars

Summary The capacity of vascular bundle system transporting assimilates from source to sink is one of the limiting factors for rice (Oryza sativa L.) yield. Genetic variation in vascular bundle system should be investigated for improvement of transporting efficiency. A total of 531 Asian rice cultivars were studied for vascular bundles in the peduncle and its relation to spike morphology. A few difference was detected for the number of primary rachis branches of the spike among the cultivars from various countries. However, the number of vascular bundles significantly differed among the cultivars; those from Nepal, Bangladesh and India bore more vascular bundles than those from Japan. Therefore, the ratio of vascular bundles to rachis branches (V/R ratio) was nearly 1.0 in cultivars from Japan, while those from Nepal, Bangladesh and India ranged from 1.3 to 2.2. Chinese and Indonesian cultivars incuded two types of high and low V/R ratios. Cultivars with high V/R ratio showed positive reactions to the phenol solution, while those with low V/R ratio were negative reactions, suggesting that the former cultivars are of Indica type and the latter of Japonica type. It was concluded that the relationship between vascular bundles and rachis branches differentiated among the ecotypes of Asian cultivated rice.     

Functional rice cultivars goami and nokwon may lower body weight and improve lipid metabolism in high fat-fed mice cultivars

The demand for functional foods is rapidly increasing due to the rising prevalence of metabolic diseases, particularly obesity and hyperlipidemia. In the few past years, various rice cultivars with enhanced functional quality and health-promoting properties have been produced. Functional rice Goami (high-amylose rice) and Nokwon (green-kerneled rice) have recently been developed, but little is known about their physiological activity. Hence, this study was conducted to determine the effect of functional rice on the body weight and lipid metabolism in mice under high-fat diet conditions. Forty male C57BL/6N mice were randomly divided and fed with experimental diets for 8 weeks: normal control (NC), high fat (HF), and high fat supplemented with white rice (HF-WR), Goami rice (HF-GR), and Nokwon rice (HF-NR). At the end of the experimental period, a marked increase in the body weight, plasma triglyceride level, and total cholesterol concentrations were found in the HF mice relative to the NC group. However, diet supplementation of Goami and Nokwon improved the lipid profile in mice through regulation of lipogenesis and adipokine production. These findings illustrate that the new functional rice cultivars Goami and Nokwon may be useful as biomaterials in the development of functional food for the prevention and treatment of high-fat, diet-induced hyperlipidemia and obesity.     

Genetic analysis and breeding use of blast resistance in a japonica rice mutant R917

R917, a japonica rice mutant with broad-spectrum of resistance to blast, was selected after treatment of the F₁ seeds from the cross between Chengte 232 and Xiushui 37 with 10 krad of ⁶⁰Co γ-ray. R917 was evaluated for blast resistance in multiple years and locations. It was resistant to 136 of 138 strains of Magnaporthe grisea collected from different regions in China with a resistance frequency of 98.55%, much higher than 86.13% and 10.15% of Chengte 232 and Xiushui 37. To analyze its inheritance of resistance to blast, R917 was crossed with the susceptible cultivar, Nonghu 6, and its two parents. It had a single dominant resistance gene to Chinese races ZB13, ZC15 and ZE3, nonallelic to those of Chengte 232 and Xiushui 37. When inoculated with 7 Japanese differential strains, R917 showed the same reaction pattern as Toride 1 and differed from the other differential varieties. But R917 was different from Toride 1 in its reaction to 7 Chinese strains. Allelism test indicated that the resistance genes between R917 and Toride 1 were nonallelic to Chinese races ZC15 and ZE3. R917 was a semi dwarf with strong stem, narrow and erect leaf, tight plant type and monogenic broad-spectrum resistance to blast. Several lines with desirable agronomic traits newly bred using R917 as a donor of blast resistance had the same broad-spectrum of resistance to blast as R917, indicating there was no linkage drag between the resistance gene and other important agronomic genes in R917. R917 has been used as a donor in rice breeding programs in China. This revised version was published online in July 2006 with corrections to the Cover Date.     

Genetic analysis of male sterility in rice mutants with environmentally influenced levels of fertility

Summary Twenty-six male sterile plants grown in the field were recovered in the M7 generation from ethyl methane sulfonate-treated material of the rice cultivar M-201. Fertility increased five-fold when ratooned plants from the field were grown in a growth chamber with a 12 hour daylength. Crosses between mutant and normal fertile cultivars produced fertile F₁ plants. Female fertility was normal as judged by percent seed set from unbagged panicles of parental and recombinant lines. Transgressive segregation for fertility was observed for all crosses in the F₂ and F₃ generations. Five of 37 F₃ male sterile plants showed moderate levels of seed fertility under winter greenhouse conditions and reduced seed set when transplanted to summer field plots. Fertility data from reciprocal crosses suggested cytoplasmic factors had little or no effect on levels of male sterility in the mutant lines. Chi-squared analyses of F₂ and F₃ generation results indicated male sterility of the mutants is conditioned by two nuclear genes with epistatic effects.