The effects of nitrogen level on the performance of Antirrhinum cultivars grown in greenhouse conditions

Summary The effects of nitrogen level on characters relating to the performance of four early and three late flowering cultivars of Antirrhinum majus were assessed. Biometrical techniques were used to distinguish the effects of nitrogen from those due to sowing time and to varietal differences. The usefulness of these techniques to the breeder and to the grower are outlined.     

Indica-japonica differentiation in Chinese rice landraces

Summary Ninety Chinese rice landraces were examined with special reference to the indica-japonica differentiation in terms of traditional criteria, isozyme analysis and PCR analysis of the chloroplast DNA (cpDNA). Cultivars were separated into indica and japonica defined by a discriminant function (Z) based on key characters, as well as by isozyme genotypes. Most indica landraces had chloroplast DNAs with a deletion at the Pst-12 fragment, while most japonica landraces had cpDNAs without the deletion. Two traditionally recognized varietal groups in China, keng and hsien, corresponded largely to the respective japonica and indica revealed in our study. The results obtained in this study showed good agreement for classification of indica and japonica types by the three methods: discriminant analysis by Z value, isozyme analysis, and PCR analysis for cpDNA.     

Molecular marker diversity and bacterial wilt resistance in wild <Emphasis Type="Italic">Solanum commersonii</Emphasis> accessions from Uruguay

Solanum commersonii is a wild tuber-bearing species native to Uruguay with high potential for use in potato breeding programs. Little is known about the genetic diversity within this wild species and the relationship with the resistance to the bacterial pathogen Ralstonia solanacearum. We studied 30 S. commersonii clonal accessions, 20 of which were collected from geographically different areas across the country, while the other ten were grown from seeds from a single plant. Resistance against R. solanacearum was tested and different levels of resistance were found, ranging from delayed wilting to asymptomatic reactions. The genetic variation and the relationships among individuals in this germplasm collection were studied by different molecular markers: Random Amplified Polymorphic DNA (RAPD), Amplified Fragment Length Polymorphism (AFLP) and Microsatellites or Simple Sequence Repeats (SSR). AFLP markers generated the largest number of total and polymorphic fragments per assay unit while SSR revealed the highest frequency of polymorphic bands (100%), followed by AFLP (96.2%) and RAPD (89.4%). In contrast, when comparing the number of different genetic profiles generated, the SSR markers exhibited the lowest discriminatory power. The clustering pattern obtained with the three marker systems showed a similar distribution of the S. commersonii germplasm revealing a high correlation between the three methods employed. All three dendrograms grouped most of the accessions into two main clusters, containing the same accessions regardless of the marker type. Bacterial wilt resistant accessions were present in both clusters. Accessions originated from different seeds of the same plant were grouped within one of the major clusters, and differed in the response to R. solanacearum revealing segregation of resistance. Furthermore, the distribution in two main clusters showed high correspondence with the geographical origin of the accessions, from the north and south of the country, and with the subspecies malmeanum and commersonii morphologically identified.     

Aneuploidy in semi dwarf wheat varieties

Summary Tall varietal impurities occurring in a number of new semi-dwarf winters wheats carrying the Norin 10 dwarfing genes Rht1 or Rht2 are causing problems at seed certification. Cytological analysis of such impurities from three varieties shows they are aneuploids and are mainly monosomic (2n=41) for chromosomes carrying semi-dwarfing genes. Because Rht1 and Rht2 act as suppressors of height, their reduced dosage as in monosomics, produces plants considerably taller than in the euploid condition.     

Phylogenetic relationships as in Ocimum revealed by RAPD markers

Genetic relationships were examined among thirty germplasm accessions belonging to five Ocimum species using RAPD markers. A very high degree of polymorphism (98.20%) was observed. UPGMA cluster analysis of genetic similarity indices grouped all the accessions into two major clusters corresponding to previously reported botanical sections. Intra-clustering within the two clusters precisely grouped the accessions belonging to one species in one sub-cluster as expected from their genetic background. Our results show that RAPD technique is a sensitive, precise and efficient tool for genomic analysis in Ocimum species, that may be useful in future studies, by assigning new unclassified germplasm accessions to specific taxonomic groups and reclassifying previously classified accessions of other Ocimum species by traditional criteria on a more objective basis. This revised version was published online in August 2006 with corrections to the Cover Date.     

Initial screening of chili and sweet pepper germplasm for resistance to chili thrips, Scirtothrips dorsalis Hood

Summary A preliminary evaluation for resistance to chili thrips, Scirtothrips dorsalis Hood of 41 and 194 pepper (Capsicum annuum L.) germplasms during 1987 and 1988, respectively, indicated chili accessions may be a promising source of resistance. In contrast, all sweet pepper accessions tested were highly susceptible. A number of chili accessions produced a moderate yield, in spite of a high thrips infestation indicating tolerance to S. dorsalis. Rating for thrips damage was more reliable and efficient than estimating thrips numbers in screening pepper accessions for resistance to thrips. Highly significant, positive correlation between ratings at the seedling stage and final rating for thrips damage indicated the feasibility of screening pepper accessions at the seedling stage. Comparing the similarities in rating among accessions resulted in 40 distinct groups. The variance-covariance matrix of the data from these 40 groups was subjected to principal component analysis. This accounted for 56 and 18 per cent of the variation across the two principal axes, respectively. Projection of chili and sweet pepper accessions along these two axes revealed three distinct clusters. About 80 per cent of chili accessions formed the first cluster, 58 per cent of the sweet pepper accessions formed the second cluster and a third cluster exhibited intermediate ratings for thrips damage. The significance of these findings in relation to geographical divergence and resistance to thrips among pepper accessions is discussed.     

Complexity of indica-japonica varietal differentiation in Bangladesh rice landraces revealed by microsatellite markers

To understand the genetic diversity and indica-japonica differentiation in Bangladesh rice varieties, a total of 151 accessions of rice varieties mostly Bangladesh traditional varieties including Aus, Boro, broadcast Aman, transplant Aman and Rayada varietal groups were genotyped using 47 rice nuclear SSRs. As a result, three distinct groups were detected by cluster analysis, corresponding to indica, Aus and japonica rice. Among deepwater rice varieties analyzed some having particular morphological features that mainly corresponded to the japonica varietal group. Some small seeded and aromatic varieties from Bangladesh also corresponded to the japonica varietal group. This research for the first time establishes that the japonica varietal group is a prominent component of traditional varieties in Bangladesh, particularly in deepwater areas.     

Diversity analysis for resistance of rice (Oryza sativa L.) to blast disease [Magnaporthe grisea (Hebert) Barr.] using differential isolates from the Philippines

A wide variation in resistance to blast disease caused by Magnaporthe grisea (Hebert) Barr. ( Rossman et al. 1992 ) was found using 922 rice ( Oryza sativa L.) varieties collected mainly from Asia. These were classified into six varietal groups, termed clusters A–F, according to Ward's hierarchical cluster analysis, based on the reaction pattern to 20 standard differential blast isolates from the Philippines. The most susceptible two clusters, B and C, dominated in varieties from the Far East (Japan). Varieties from East Asia and Southeast Asia occurred less frequently in B and C clusters than those of Japan, and more frequently in E and F clusters, which were the most resistant of the cluster groups. Varieties from South Asia showed the widest variation, occurring in all clusters but less frequently in cluster B. The cluster B varieties dominated in Japan and showed a high frequency of isozyme type VI, corresponding to Japonica type. In contrast, the frequency of cluster B was low in the groups with isozyme types I, II, III and V, which dominated in South Asia. Isozyme type I corresponds to Indica type varieties. The distribution of resistance corresponded to the geographical distribution of rice varieties and might be related to differentiation into Indica and Japonica types. These findings will provide useful information for understanding the variation in blast resistance at the global level.     

Random amplified polymorphic DNA (RAPD) markers variability among cultivars and landraces of common beans (Phaseolus vulgaris L.) of south-Brazil

To evaluate the variability among cultivars and landraces of common bean(Phaseolus vulgaris L.), 15 cultivars and 18 landraces of common bean (Phaseolus vulgarisL.), a undefined species of Phaseolus,two landraces of Vigna angularis L., and a landrace of soybean (Glycine maxL.), were screened with fifteen oligonucleotide primers in PCR reactions. An average of 20.3 RAPD bands were scored per primer. A total of 304 amplification products were scored of which 88.8% were polymorphic among Phaseolus genotypes. Based on the RAPD markers, four major clusters were formed. Three clusters corresponded to the soybean, to the two Vigna angularis landraces, and to the Phaseolus sp. landrace, respectively. The fourth cluster include all the landraces and cultivars of Phaseolus vulgaris. This large group could be separated into three subgroups that were correlated with the phaseolin patterns and the average seed weight of the genotypes. The analysis shows that most of the landraces collected in South Brazil (17 out of 18) belong to the Andean gene pool, and most of the cultivars (13 out of 15) belong to the Middle American gene pool. This revised version was published online in July 2006 with corrections to the Cover Date.     

Participatory farmers’ selection of common bean varieties (Phaseolus vulgaris L.) under different production constraints

On‐farm evaluation of 15 common bean varieties was undertaken with nine farmer groups under two fertilizer applications levels in four subcounties of Hoima and Rakai districts for two seasons to select farmers’ desired and undesired varieties. Farmers’ votes for acceptance and rejection of varieties at podding stage were converted to a preference index, and analysis of variance was conducted to examine differences in farmers’ preference indices among subcounties and combined across subcounties, seasons, management and gender. Management had no‐significant influence on the way farmers selected varieties in the subcounties. Choice of varieties varied significantly (p ≤ .001) between seasons and gender in the different subcounties. Variety Masindi Yellow Long and Farmers’ seed (Kaduli), and the introduced KATB1 were accepted by farmers due to their medium seed size, desired seed colour and potential of varietal adaptability to their farm conditions. Varieties NABE2, ROBA1 and RWR719 were deselected due to possession of traits less desired in the market. These results demonstrate the need for breeding programmes to involve diverse stakeholders in capturing the diverse traits preferences in varietal development process.     

Isozyme variation in cultivated and wild pineapple

Summary Isozyme variation was studied in 161 accessions of pineapple including four species of Ananas and one of Pseudananas. Six enzyme systems (ADH, GPI, PGM, SKDH, TPI, UGPP) involving seven putative loci revealed 35 electromorphs. Considerable variation exists within and between species of Ananas. Sixty-six distinct zymotypes were identified. Multivariate analyses of isozyme variation indicated that A. comosus contains five genetically diverse groups that do not match perfectly with the traditional varietal groups. Isozyme evidence also suggests that A. erectifolius is a conspecific variant of A. comosus, and that among other wild species, A. ananassoides is more closely related to A. comosus than A. bracteatus. Pseudananas is genetically distinct from all species of Ananas. It is evident from our study that differentiation among the species of Ananas may be due to ecological isolation rather than genetic divergence with breeding barriers and therefore may represent a species complex.This is journal series No. 3956 of the Hawaii Institute of Tropical Agriculture and Human Resources.     

Resistance to Verticillium albo-atrum in lucerne (Medicago sativa L.) to distinguish between varieties

France is responsible for DUS (Distinction–Uniformity–Stability) testing of new varieties of lucerne (Medicago sativa L.) for several European countries. Many varieties fail to be registered because of a lack of distinctness from the already registered varieties. The addition of the other traits such as disease or pest resistance could help in distinction. The aim of the present study was to optimize measurement of the resistance of lucerne to Verticillium albo-atrum. Although the resistance to V. albo-atrum is a qualitative trait for each plant, varietal resistance is a continuous variable because each variety contains a variable percentage of resistant plants. Fifty cultivars were tested for V. albo-atrum in two laboratories at random from among five private and public laboratories. Five check varieties were tested in the five laboratories in two tests. A score of resistance, corrected from the effect of the test, was given for each cultivar. A method to validate any new test is proposed. This data set can now be incremented by the resistance scores to V. albo-atrum of new varieties. It will help in distinguishing between lucerne varieties.     

Evaluation of genetic variation in Lachenalia bulbifera (Hyacinthaceae) using RAPDs

RAPD (randomly amplified polymorphic DNA) analyses were carried out on 21 accessions of Lachenalia bulbifera (Cyrillo) Engl. Five pre-selected primers produced an average of 88% polymorphisms. Fifteen of the 21 accessions could be identified using the five primers. In a pairwise comparison genetic distance values ranging from 0.11 to 1.08 were obtained. These values reveal a high amount of variation within the species. The genetic distance values within the tetraploid and hexaploid groups on the south coast were low, but values were high between the groups on the south coast and those on the west coast. A dendogram was constructed from the RAPD banding profiles, using UPGM cluster analysis. The dendogram clusters certain accessions together. These clusters are supported by their geographical locality and chromosome data. The hexaploid group, tetraploid group and octoploid group on the south coast are respectively clustered together. It is concluded that RAPDs can be used to assess the genetic variation at an intra-specific level in Lachenalia. This revised version was published online in July 2006 with corrections to the Cover Date.     

Graph clustering of Piper nigrum L. (black pepper)

A profound degree of morphological variation exists among the cultivars of Piper nigrum cultivated in Kerala State, South India. Fifty one cultivars of this crop species from the State were subjected to graph clustering by the ‘Graph Theory’ model, based on 27 morphological characters, both qualitative and quantitative, aimed at clustering them into groups with an appreciable degree of intracluster discreteness and intercluster distance. The result was presented in a ‘Skyline Plot’. Ten C-clusters were formed at the c-value of 0.46 corresponding to a fairly high moat value. The number of members from different clusters ranged from 3–8. Distribution of various characters among the clusters formed, shows a considerable degree of intracluster similarity (connectedness) and intercluster distance (isolation). The present graph clustering is significant as it provides reliable clues for selecting parental cultivars with fair degree of genetic difference, from clusters exhibiting appreciable isolation, for future intervarietal hybridization programmes in the crop. This revised version was published online in July 2006 with corrections to the Cover Date.     

Increasing genetic diversity by participatory varietal selection in high potential production systems in Nepal and India

On-farm varietal biodiversity was studied through household surveys in two high potential production systems in Chitwan and Nawalparasi districts of the Nepal Terai and in Lunawada sub-district, Gujarat, India. Diversity was extremely low in Chaite rice in the Nepal study area (weighted diversity 0.04) and low in main season rice in the India study area (weighted diversity 0.34). In both areas, one cultivar dominated, CH 45 in Nepal and GR11 in India. In the India study area, biodiversity varied with the socio-economic group and better-off farmers had a greater varietal diversity. Participatory varietal selection (PVS) identified new varieties that farmers preferred. Their adoption by farmers increased on-farm varietal biodiversity within the three cropping seasons studied. Despite the commonly assumed uniformity of high potential production systems, the new varieties occupied specific niches in the farming system. Farmers' preferences for different varieties – there were large differences in quality traits and maturity period among the new varieties – should help to maintain biodiversity. Overall production is expected to increase as each niche becomes occupied increasingly by the best-adapted variety. PVS is a simple and powerful method of increasing food production in the high potential production systems that produce most of the developing world's grain. This revised version was published online in August 2006 with corrections to the Cover Date.     

Genetics of morphological traits in wild wheat,Triticum turgidum var.dicoccoides

Summary The mode of inheritance, linkage groups, and chromosomal location of 23 morphological and 4 biochemical traits were characterized in the wild tetraploid emmer wheat,Triticum turgidum var.dicoccoides. These traits were described and their mode of inheritance was determined by their segregation in four F₂ populations derived from crosses between four var.dicoccoides accessions and a tetraploiddurum cultivar. Linkage groups among the genes encoding for these traits were determined or postulated, and their chromosomal location was deduced by linkage to previously located genes. The genetic control of the following traits was characterized and is first reported here: black keel; hairy leaf sheath; hairy auricles; hairy rachilla; hairy kernel brush; obtuse flag leaf; and curved neck/peduncle. The linkage data indicated that developmentally-related genes tended to occur in clusters.     

A preliminary genetic analysis of fibre traits and the use of new genomic SSRs for genetic diversity in jute

Jute is one of the most important fibre crops, which is second only to cotton in providing environment-friendly (biodegradable and renewable) ligno-cellulose fibre. In order to improve this largely neglected crop, we conducted a preliminary study involving the following: (i) analysis of nature and extent of the genetic variability for fibre yield and four other related traits in a set of 81 genotypes belonging to two commercially cultivated Corchorus species (45 genotypes of C. olitorius + 36 genotypes of C. capsularis), (ii) development and analysis of a set of simple sequence repeat (SSR) markers from C. olitorius, and (iii) use of a sub-set of SSRs for assessment of genetic diversity in the above set of 81 genotypes. The results suggested quantitative nature of fibre yield and other related traits, with a preponderance of dominance component in genetic variance. A sub-set of 45 SSRs derived from C. olitorius, when used for a study of DNA polymorphism and genetic diversity, showed high transferability of these C. olitorius SSRs to C. capsularis. The average number of alleles for individual SSRs was surprisingly low (3.04 for both species, 2.02 for C. capsularis and 2.51 for C. olitorius), and so was the average polymorphic information content (PIC; 0.23 and 0.24 in two species). In the dendrogram obtained using a similarity matrix, the 81 genotypes were grouped into three clusters, which largely corresponded to the two species, Cluster I belonging mainly to C. capsularis and the other two closely related clusters (clusters II and III) belonging to C. olitorius. It was also shown that a minimum of 15 SSRs could give the same information as 41 SSRs, thus making many SSRs redundant. The SSR markers developed during the present study and to be developed in future will prove useful not only for evaluation of genetic diversity, but also for molecular mapping/QTL analysis, and for comparative genome analysis of the two Corchorus species. Electronic supplementary material The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

An extended interspecific gene pool available to peach and almond breeding as characterized using simple sequence repeat (SSR) markers

Genetic diversity, as revealed by eighteenSimple Sequence Repeat (SSR) markers inthirty almond [P. dulcis (Mill.) D.A.Webb], twenty fresh-market peach [Prunus persica (L.), Basch], fifteenprocessing clingstone peach cultivars, andten rootstocks, established the geneticrelatedness among cultivars andcharacterized the variation within andbetween species. One accession each of thewild Prunus species, P.davidiana [(Carriere) Franch] and P.webbii [(Spach.) Vieh.], was included inthe analysis. The number of presumedalleles revealed by the SSR analysis rangedfrom one to six in peach whereas almondcultivars showed a range of three to nine.Peach cultivars clustered into ten groups,which are in general agreement withdocumented origin. Most processingclingstone peach cultivars clusteredseparately from fresh-market freestonecultivars supporting a distinct origin. Twomajor clusters were observed in almond withone containing California cultivars and theother containing European cultivars and theimportant California cultivar Mission.Results establish the value of SSR markersfor distinguishing different geneticlineages and characterize an extensive andlargely unexploited inter-species gene poolavailable to peach and almond breedingprograms.     

The influence of disease complexes involving Leptosphaeria (Septoria) nodorum on detection of resistance to three leaf spot diseases in wheat

Summary In controlled inoculation studies with Septoria nodorum and Pyrenophora tritici-repentis, estimates of the relative proportion of each pathogen demonstrated differences in the responses of cultivars to pathogen mixtures that were not apparent from measurements of diseased leaf areas. Under field conditions estimates of the relative proportion of S. nodorum, P. tritici-repentis and S. tritici varied between field screening locations in Western Australian but also between lines within locations. Lines with known resistance to P. tritici-repentis and S. tritici, but susceptible to S. nodorum, could not be distinguished from susceptible lines on the basis of leaf area diseased or grain weight depression when S. nodorum was present in the disease complex. Such conditions, while suitable for the selection of combined resistance to these pathogens, were unsuitable for identifying resistance to individual pathogens. As symptoms were similar, the proportion of diseased leaf area sporulating with each pathogen provided a means of measuring the variation in disease development induced on lines varying in resistance. Knowledge of the components of disease and their relative importance were essential in understanding varietal response information under mixed infections of these leaf spot pathogens.