Long-term submergence of non-methanogenic oxic upland field soils helps to develop the methanogenic archaeal community as revealed by pot and field experiments

The community structure of methanogenic archaea is relatively stable,i.e.,it is sustained at a high abundance with minimal changes in composition,in paddy field soils irrespective of submergence and drainage.In contrast,the abundance in non-methanogenic oxic soils is much lower than that in paddy field soils.This study aimed to describe methanogenic archaeal community development following the long-term submergence of non-methanogenic oxic upland field soils in pot and field experiments.In the pot experiment,a soil sample obtained from an upland field was incubated under submerged conditions for 275 d.Soil samples periodically collected were subjected to culture-dependent most probable number(MPN)enumeration,polymerase chain reaction-denaturing gradient gel electrophoresis(PCR-DGGE)analysis of archaeal 16 S r RNA gene,and quantitative PCR analysis of the methyl-coenzyme M reductase alpha subunit gene(mcr A)of methanogenic archaea.The abundance of methanogenic archaea increased from 102 to 103 cells g-1 dry soil and 104 to 107 copies of mcr A gene g-1 dry soil after submergence.Although no methanogenic archaeon was detected prior to incubation by the DGGE analysis,members from Methanocellales,Methanosarcinaceae,and Methanosaetaceae proliferated in the soils,and the community structure was relatively stable once established.In the field experiment,the number of viable methanogenic archaea in a rice paddy field converted from meadow(reclaimed paddy field)was monitored by MPN enumeration over five annual cycles of field operations.Viability was also determined simultaneously in a paddy field where the plow layer soil from a farmer’s paddy field was dressed onto the meadow(dressed paddy field)and an upland crop field converted from the meadow(reclaimed upland field).The number of viable methanogenic archaea in the reclaimed paddy field was below the detection limit before the first cultivation of rice and in the reclaimed upland field.Then,the number gradually increased over five years and finally reached 103–104 cells g-1 dry soil,which was comparable to that in the dressed paddy field.These findings showed that the low abundance of autochthonous methanogenic archaea in the non-methanogenic oxic upland field soils steadily proliferated,and the community structure was developed following repeated and long-term submergence.These results suggest that habitats suitable for methanogenic archaea were established in soil following repeated and long-term submergence.     

Chronic effects of different fertilization regimes on nirS-type denitrifier communities across the black soil region of Northeast China

Denitrification is one of the major processes causing nitrogen loss from arable soils.This study aimed to investigate the responses of nir S-type denitrifier communities to different chronic fertilization regimes across the black soil region of Northeast China.Soil samples were collected from sites located in the north(NB),middle(MB),and south(SB)of the black soil region of Northeast China,each with four chronic fertilization regimes:no fertilizer(No F),chemical fertilizer(CF),manure(M),and chemical fertilizer plus manure(CFM).Methods of quantitative polymerase chain reaction(q PCR)and Illumina Mi Seq sequencing were applied to assess the abundance and composition of denitrifier communities by targeting the nir S gene.The results showed that the M and CFM regimes significantly increased the abundances of nir S-type denitrifiers compared with No F at the three locations.The majority of nir S sequences were grouped as unclassified denitrifiers,and the different fertilizers induced little variation in the relative abundance of known nir S-type denitrifier taxa.Over 90%of the sequences were shared among the four fertilization regimes at each location,but none of the abundant operational taxonomic units(OTUs)were shared among the three locations.Principal coordinate analysis(PCo A)revealed that the communities of nir S-type denitrifier were separated into three groups that corresponded with their locations.Although similar fertilization regimes did not induce consistent changes in the nir S-type denitrifier communities,soil p H and NO-3-N content simultaneously and significantly influenced the structure of nir S-type denitrifier communities at the three locations.Our results highlight that geographical separation rather than chronic fertilization was the dominant factor determining the nir S-type denitrifier community structures,and similar chronic fertilization regimes did not induce consistent shifts of nir S-type denitrifier communities in the black soils.     

Investigating drivers of microbial activity and respiration in a forested bog

Northern peatlands store nearly one-third of terrestrial carbon(C)stocks while covering only 3%of the global landmass;nevertheless,the drivers of C cycling in these often-waterlogged ecosystems are different from those that control C dynamics in upland forested soils.To explore how multiple abiotic and biotic characteristics of bogs interact to shape microbial activity in a northern,forested bog,we added a labile C tracer(13C-labeled starch)to in situ peat mesocosms and correlated heterotrophic respiration with natural variation in several microbial predictor variables,such as enzyme activity and microbial biomass,as well as with a suite of abiotic variables and proximity to vascular plants aboveground.We found that peat moisture content was positively correlated with respiration and microbial activity,even when moisture levels exceeded total saturation,suggesting that access to organic matter substrates in drier environments may be limiting for microbial activity.Proximity to black spruce trees decreased total and labile heterotrophic respiration.This negative relationship may reflect the influence of tree evapotranspiration and peat shading effects;i.e.,microbial activity may decline as peat dries and cools near trees.Here,we isolated the response of heterotrophic respiration to explore the variation in,and interactions among,multiple abiotic and biotic drivers that influence microbial activity.This approach allowed us to reveal the relative influence of individual drivers on C respiration in these globally important C sinks.     

Enhanced anaerobic degradation of hexachlorobenzene in a Hydragric Acrisol using

Humic substances acting as an electron shuttle and nitrogen transformation process influence remarkably the electron transfer in anaerobic reaction systems and thus may affect the reductive dechlorination of hexachlorobenzene(HCB). In order to develop an efficient agricultural strategy for the remediation of organochlorine-contaminated soils, a batch incubation experiment was conducted to study the effects of humic acid, urea, and their interaction on the reductive dechlorination of HCB in a Hydragric Acrisol with high iron oxide content. After 44 d of anaerobic incubation, the five treatments, sterile control,control, humic acid, urea, and humic acid + urea decreased HCB residues by 28.8%, 47.8%, 64.7%, 57.8%, and 71.3%, respectively. The amendment of humic acid or urea significantly decreased soil Eh values and accelerated Fe(Ⅲ) reduction to Fe(Ⅱ), thus promoting markedly reductive dechlorination of HCB. Humic acid had a larger dechlorination effect than urea. Since there was a synergistic interaction between humic acid and urea that accelerated HCB dechlorination, the treatment having both amendments together was the most efficient for HCB dechlorination. The results showed that the combination of NH4⁺_-N supplied by a fertilizer and humic substance is a feasible strategy for the remediation of organochlorine-contaminated soils with abundant iron oxide.     

Evidence for niche differentiation of nitrifying communities in grassland soils after 44 years of different field fertilization scenarios

Long-term nitrogen(N)fertilization imposes strong selection on nitrifying communities in agricultural soil,but how a progressively changing niche affects potentially active nitrifiers in the field remains poorly understood.Using a 44-year grassland fertilization experiment,we investigated community shifts of active nitrifiers by DNA-based stable isotope probing(SIP)of field soils that received no fertilization(CK),high levels of organic cattle manure(HC),and chemical N fertilization(CF).Incubation of DNA-SIP microcosms showed significant nitrification activities in CF and HC soils,whereas no activity occurred in CK soils.The 44 years of inorganic N fertilization selected only 13C-ammonia-oxidizing bacteria(AOB),whereas cattle slurry applications created a niche in which both ammonia-oxidizing archaea(AOA)and AOB could be actively13C-labeled.Phylogenetic analysis indicated that Nitrosospira sp.62-like AOB dominated inorganically fertilized CF soils,while Nitrosospira sp.41-like AOB were abundant in organically fertilized HC soils.The 13C-AOA in HC soils were affiliated with the 29i4 lineage.The 13C-nitrite-oxidizing bacteria(NOB)were dominated by both Nitrospira-and Nitrobacter-like communities in CF soils,and the latter was overwhelmingly abundant in HC soils.The 13C-labeled nitrifying communities in SIP microcosms of CF and HC soils were largely similar to those predominant under field conditions.These results provide direct evidence for a strong selection of distinctly active nitrifiers after 44 years of different fertilization regimes in the field.Our findings imply that niche differentiation of nitrifying communities could be assessed as a net result of microbial adaption over 44 years to inorganic and organic N fertilization in the field,where distinct nitrifiers have been shaped by intensified anthropogenic N input.     

Complementary effect of zoo compost with mineral nitrogen fertilisation increases wheat yield and nutrition in a low-nutrient soil

Excess nitrogen(N) fertiliser use in agriculture is associated with water pollution and greenhouse gas emissions.While practices and programs to reduce N fertiliser application continue to be developed,inefficient fertiliser use persists.Practices that reduce mineral N fertiliser application are needed in a sustainable agricultural ecosystem to control leaching and gaseous losses for environmental management.This study evaluated whether fully or partially replacing mineral N fertiliser with zoo compost(Perth Zoo) could be a good mitigation strategy to reduce mineral N fertiliser application without affecting wheat yield and nutrition.To achieve this,a glasshouse experiment was conducted to assess the complementary effect of zoo compost and mineral N fertiliser on wheat yield and nutrition in a sandy soil of southwestern Australia.Additionally,a chlorophyll meter was used to determine whether there was a correlation between chlorophyll content and soil mineral N content,grain N uptake,and grain protein content at the tillering(42 d after sowing(DAS)) and heading(63 DAS) growth stages.The standard practice for N application for this soil type in this area,100 kg ha^-1,was used with a soil bulk density of 1.3 g cm^-3 to calculate the amount of mineral N(urea,46% N) and Perth Zoo compost(ZC)(0.69% N) for each treatment.Treatments comprised a control(no nutrients added,T1),mineral N only(100 kg N ha^-1,T2),ZC only(100 kg N ha^-1,T7),and combinations of mineral N and ZC at different rates(mineral N at 100 kg N ha^-1+ ZC at 25 kg N ha^-1(T3),mineral N at 75 kg N ha^-1+ ZC at 25 kg N ha^-1(T4),mineral N at 75 kg N ha^-1+ ZC at 50 kg N ha^-1(T5),and mineral N at 50 kg N ha^-1+ ZC at 50 kg N ha^-1(T6)).The T6 treatment significantly increased grain yield(by 26%) relative to the T2 treatment.However,the T7 treatment did not affect grain yield when compared to the T2 treatment.All treatments with mineral N and ZC in combination significantly improved the 1 000-grain weight compared to the T2 treatment.Chlorophyll content was better correlated with soil mineral N content(r = 0.61),grain N uptake(r = 0.62),and grain protein content(r = 0.80) at heading(63 DAS) than at tillering(42 DAS).While ZC alone could not serve as an alternative to mineral N fertiliser,its complementary use could reduce the mineral N fertiliser requirement by up to 50% for wheat without compromising grain yield,which needs to be verified in the field.Chlorophyll content could be used to predict soil mineral N at the heading stage,and further studies are warranted to verify its accuracy in the field.Overall,the application of ZC as part of integrated nutrient management improved crop yield with reduced N fertiliser application.     

A new perspective on functional redundancy and phylogenetic niche conservatism in soil microbial communities

Functional redundancy in soil microbial communities seems to contradict the notion that individual species have distinct metabolic niches in multi-species communities.All soil microbiota have the metabolic capacity for"basic"functions(e.g.,respiration and nitrogen and phosphorus cycling),but only a few soil microbiota participate in"rare"functions(e.g.,methanogenesis and mineralization of recalcitrant organic pollutants).The objective of this perspective paper is to use the phylogenetic niche conservatism theory as an explanation for the functional redundancy of soil microbiota.Phylogenetic niche conservatism is defined as the tendency for lineages to retain ancestral functional characteristics through evolutionary time-scales.The present-day soil microbiota is the result of a community assembly process that started when prokaryotes first appeared on Earth.For billions of years,microbiota have retained a highly conserved set of core genes that control the essential redox and biogeochemical reactions for life on Earth.These genes are passed from microbe to microbe,which contributes to functional redundancy in soil microbiota at the planetary scale.The assembly of microbial communities during soil formation is consistent with phylogenetic niche conservatism.Within a specific soil,the heterogeneous matrix provides an infinite number of sets of diverse environmental conditions,i.e.,niches that lead to the divergence of microbial species.The phylogenetic niche conservatism theory predicts that two or more microbial species diverging from the same clade will have an overlap in their niches,implying that they are functionally redundant in some of their metabolic processes.The endogenous genetic factors that constrain the adaptation of individuals and,thus,populations to changing environmental conditions constitute the core process of phylogenetic niche conservatism.Furthermore,the degree of functional redundancy in a particular soil is proportional to the complexity of the considered function.We conclude with a conceptual model that identifies six patterns of functional redundancy in soil microbial communities,consistent with the phylogenetic niche conservatism theory.     

Responses of soil phosphorus pools accompanied with carbon composition and microorganism changes to phosphorus-input reduction in paddy soils

In rice-wheat rotation systems, changes in soil phosphorus(P) pools and microorganisms in rice-growing seasons have been studied;however, further investigations are required to test whether these indexes exhibit different responses in wheat-growing seasons. Additionally, such studies need to include potential variations in soil carbon(C) structure and microbial community composition. In this study, a long-term rice-wheat rotation P-input reduction experiment was conducted to observe the variations in soil P pools and C composition in the 7th wheat season and to investigate the responses of soil enzyme activity and microbial communities. Four P fertilization treatments were included in the experiment, i.e., P application for rice season only(PR), for wheat season only(PW), and for both rice and wheat seasons(PR+W) and no P application in either season(Pzero). Compared with PR+W treatment, Pzero treatment significantly decreased(P < 0.05) labile and stable P pools. Different P fertilization regimes altered soil microbial community composition and enzyme activity, whereas C composition did not vary. However, PW treatment resulted in relatively more O-alkyl-C than PR treatment and the highest number of microorganisms. Besides, the higher ratios of fungi/bacteria and Gram-positive bactetia/Gram-negative bactetia were related to labile C pools, particularly O-alkyl-C, as opposed to recalcitrant C. Our results clarified the status of soil P pools, C chemistry, and the response of microorganisms under dry-farming conditions in the P input-reduced rice-wheat rotation system.     

Beyond microbial diversity for predicting soil functions: A mini review

Since the advent of sequencing technologies,the determination of microbial diversity to predict microbial functions,which are the major determinants of soil functions,has become a major topic of interest,as evidenced by the 900 publications dealing with soil metagenome published up to 2017.However,the detection of a gene in soil does not mean that the relative function is expressed,and the presence of a particular taxon does not mean that the relative functions determined in pure culture also occur in the studied soil.Another critical step is to link microbial community composition or function to the product analyzed to determine flux rates.Indeed,flux rates might not only be highly dynamic,but several metabolites can depend on different reactions,which makes the link to one process of interest difficult or even impossible.This review also discusses biases caused by sampling,storage of samples,DNA extraction and purification,sequencing(amplicon-vs.metagenome sequencing),and bioinformatic data analysis.Insights and the limits of predicting microbial interactions by network inference methods are critically discussed,and finally,future directions for a better understanding of soil functions by using measurements of microbial diversity are presented.     

Influence of kaolinite and montmorillonite on benzo[a]pyrene biodegradation by Paracoccus aminovorans HPD-2 and the underlying interface interaction mechanisms

Clay minerals play an important role in biogeochemical cycling.Here,kaolinite and montmorillonite,the two most abundant and widespread clay minerals with typical layered structures,were selected to investigate and compare their effects on the biodegradation of benzo[a]pyrene(BaP)by Paracoccus aminovorans HPD-2 and to investigate the underlying interface mechanisms.Overall,the BaP degradation efficiency was significantly higher 7 d after montmorillonite addition,reaching 68.9%(P<0.05),when compared with that of the control without addition of clay minerals(CK,61.4%);however,the addition of kaolinite significantly reduced the BaP degradation efficiency to 45.8%.This suggests that kaolinite inhibits BaP degradation by inhibiting the growth of strain HPD-2,or its strong hydrophobicity and readily agglomerates in the degradation system,resulting in a decrease in the bio-accessibility of BaP to strain HPD-2.Montmorillonite may buffer some unfavorable factors,and cells may be fixed on the surface of montmorillonite colloidal particles across energy barriers.Furthermore,the adsorption of BaP on montmorillonite may be weakened after swelling,reducing the effect on the bio-accessibility of BaP,thus promoting the biodegradation of BaP by strain HPD-2.The experimental results indicate that differential bacterial growth,BaP bio-accessibility,interface interaction,and the buffering effect may explain the differential effects of the different minerals on polycyclic aromatic hydrocarbon biodegradation.These observations improve our understanding of the mechanisms by which clay minerals,organic pollutants,and degrading bacteria interact during the biodegradation process and provide a theoretical basis for increasing the biodegradation of soil pollutants by native microorganisms under field conditions.     

同步辐射XAFS技术在元素研究中的应用

综述了同步辐射XAFS的基本原理和优点及其在若干研究领域元素测定中的应用。     

应用XAFS研究草酸根和胡敏酸对As(V)在红壤中吸附的影响

结合吸附实验和X光吸收精细结构光谱(XAFS)分析,研究了草酸根和胡敏酸对As(V)在红壤中吸附的影响,分析了As(V)在红壤中的化学形态和微观结构以及草酸根、胡敏酸的影响特征。结果表明,当pH6.0时,红壤主要是通过基团交换反应吸附As(V),草酸根和胡敏酸可以通过竞争吸附位点抑制红壤中As(V)的吸附,其抑制作用随浓度增大而增强。XAFS光谱学数据表明,红壤中吸附的砷以+5价态存在,主要与铁铝矿物形成以约0.317 nm As-Al和0.328 nm As-Fe原子间距为特征的双齿双核结构的内层复合物,复合物结构类型不受砷浓度和草酸根、胡敏酸的影响。     

X射线吸收精细结构光谱在土壤中的应用

由于X射线吸收精细结构(X-ray absorption fine structure,XAFS)可以原位探测吸收原子的2~3个邻近配位壳层,获得目标元素的电子结构信息和化学结构信息,所以XAFS已成为微观领域最重要的结构分析工具,丰富了我们对元素的重要化学性质和反应过程的认识。本文简述了XAFS的基本原理,探讨了样品制备、测试及数据分析等过程需关注的问题,重点综述了应用XAFS研究土壤重金属和营养元素的形态、土壤固-液界面的反应过程和机理,并指出其应用的局限性和未来发展的前景,旨在推动我国XAFS在土壤科学中的应用。由于土壤中界面反应的复杂性,XAFS应结合其他结构分析技术,结构分析技术应结合宏观数据和计算机模拟,土壤学应与其他学科交叉、融合,只有这样,才有可能在时间和空间尺度上阐明土壤组分在环境界面上的复杂反应过程和机理。     

A review of cadmium sorption mechanisms on soil mineral surfaces revealed from synchrotron-based X-ray absorption fine structure spectroscopy: Implications for soil remediation

The sorption of cadmium(Cd) is one of the most important chemical processes in soil, affecting its fate and mobility in both soil and water and ultimately controlling its bioavailability. In order to fundamentally understand the sorption/desorption of Cd in soil systems, X-ray absorption fine structure spectroscopy(XAFS) has been applied in numerous studies to provide molecular-level information that can be used to characterize the surface adsorption and precipitation reactions that Cd can undergo. This information greatly improves our current knowledge of the possible chemical reactions of Cd in soil. This paper critically reviews the mechanisms of Cd sorption/desorption at the mineral-water interface based on XAFS studies performed over the past twenty years. An introduction to the basic concepts of sorption processes is provided, followed by a detailed interpretation of XAFS theory and experimental data collection and processing,ending finally with a discussion of the atomic/molecular-scale Cd sorption mechanisms that occur at the soil mineral-water interface. Particular emphasis is placed on literature that discusses Cd adsorption and speciation when associated with iron, manganese, and aluminum oxides and aluminosilicate minerals.Multiple sorption mechanisms by which Cd is sorbed by these minerals have been found, spanning from outer-sphere to inner-sphere to surface precipitation,depending on mineral type, surface loading, and pH. In addition, the application of complementary techniques(e.g.,113 Cd nuclear magnetic resonance(NMR) and molecular dynamics simulation) for probing Cd sorption mechanisms is discussed. This review can help to develop appropriate strategies for the environmental remediation of Cd-contaminated soils.     

Characterization of zinc in contaminated soils: complementary insights from isotopic exchange,batch extractions and XAFS spectroscopy

Isotopic exchange (IE) of trace metals is an established method for characterizing metal reactivity in soils, but it is still unclear which metal species are isotopically exchangeable. In this study, we used IE to quantify ‘labile’ zinc (Zn) in 51 contaminated soils that were previously studied by Zn K‐edge X‐ray absorption fine structure (XAFS) spectroscopy and sequential extraction (SE). All soils had been contaminated by runoff water from 17‐ to 74‐year‐old galvanized power‐line towers. They covered a wide range in pH (4.0–7.7), organic carbon (0.9–10.2%), clay (3.8–45.1%) and Zn concentrations (251–30 090 mg kg^?1). Isotopic exchange was also performed on selected Zn minerals used as references for linear combination fitting of XAFS spectra. The isotopically exchangeable fraction (%E) of Zn generally decreased with increasing pH, but small %E values were also observed for acidic soils with a large fraction of Zn in hydroxy‐interlayered minerals (Zn‐HIM). The fraction of Zn identified by XAFS spectroscopy as (tetrahedrally and octahedrally coordinated) ‘sorbed Zn’ agreed reasonably well with the isotopically exchangeable fraction but was in many cases larger than the %E, indicating that some ‘sorbed Zn’ may be isotopically non‐exchangeable, such as Zn sorbed in micropores of Fe oxyhydroxides. Zinc identified by XAFS spectroscopy as Zn precipitates (Zn phyllosilicates, Zn‐layered double hydroxide (Zn‐LDH) or hydrozincite) or as Zn‐HIM was largely isotopically non‐exchangeable (‘non‐labile’). Comparison between IE and extraction results suggested that the isotopically exchangeable Zn was mainly extracted in the first two fractions of the SE. However, non‐labile Zn was also extracted in these first two fractions for some soils, including a hydrozincite‐containing soil. Despite the presence of Zn‐LDH and/or Zn phyllosilicates in almost all soils, the Zn concentrations in solution and labile Zn increased with increasing soil total Zn at a given pH, which contradicts the concept of precipitation control by a single phase. Solution Zn was well predicted from the labile Zn following a sorption model.     

Preliminary observations on the natural variation in the endogenous rhythm of the desert Isopod Hemilepistus reaumurii

The desert woodlouse Hemilepistus reaumurii lives in monogamous pairs, together with their offspring, in self-dug burrows. Every burrow contains only one family. This animal is active on the surface from the beginning of spring to autumn. It remains in the burrow during the hottest part of the day, to avoid the heat, but is active at the surface during morning and evening. During the winter, low temperature prevents its above ground activity. Freshly collected animals, from the north of Kairouan (Tunisia) were transferred to a controlled environment cabinet in the laboratory and their locomotor activity monitored as individuals or in male/female pairs, in annular chambers equipped with an infrared activity recording system. For the first 7 days of recording, the animals were kept in a light–dark cycle in phase with the natural diel cycle. For the second 7 days, animals were maintained in constant darkness. The temperature was held constant at 18±1 °C. Analysis of preliminary data indicates that both individuals and pairs exhibit an endogenous rhythm of locomotor activity with a circadian periodicity. Activity was mostly confined to the hours of the photophase (1–7 days) or to those of subjective day (8–14 days). The activity pattern showed two main peaks, around dusk and dawn, respectively. This bimodal circadian rhythm persisted for as long as the experiments were run, and was clearer in individual recording than in pair recording. The characteristics and biological significance of the rhythm are discussed.     

Investigations on the potential of woodlice as bioindicators of grassland habitat quality

As intensive land-use practices may reduce available leaf litter, woodlice—important decomposers of leaf litter—may show a loss of biomass and a decrease in number of species. Their diversity as grassland detritivores could thus be a potential guide to ecosystem activity in natural and cultivated grasslands. Woodlice diversity was studied in different grassland types at three sites in Western France: Avon, with semi-natural grasslands; Fors, with mixed farming; Lusignan, with intensive farming. Woodlice were collected by hand in plot centres, borders and field boundaries. Isopod numbers were higher at Fors than at Lusignan; species assemblages were dominated by Philoscia muscorum at Lusignan whereas this species is less numerous at Fors than Armadillidium vulgare and Armadillidium nasatum. These results also differ with grassland type, with higher species diversity or number of individuals in temporary and permanent grasslands at Fors. Hedges were important in increasing isopod diversity within plots. Assemblages reflect grassland quality with high densities and diversity of woodlice in the permanent grasslands at Avon.     

Differences in the diversity of oribatid mite communities in forests and agrosystems lands

A field study was conducted in the province of Burgos (Castile, NW of Spain) to assess the role and influence of the different anthropic use of soil on the oribatid mite communities (Acari, Oribatida).Soil samples from 20 representative soil sites of the Castilian upland steppes, with cultured, pastureland or forest soil uses, were taken in spring and autumn 2000. Thereafter, soil samples were analysed in terms of their mesofaunal biodiversity, measured using the real and relative diversity of the oribatid mite communities.Collected individuals were identified to species level, being altogether 111 Oribatid species. Results from communities' ordination analysis showed clear gradients based on community variables. One of these was defined by plots with high values of diversity and species richness which correspond to the less anthropic natural soils, mainly oak forest. In contrast, the most anthropic agrosystems soils, including extensive cereal crops, most of them receiving only mineral fertilisation or having human management, were placed in opposite gradients. Differences in biodiversity between crop lands and natural soils were also confirmed by ANOVA. The seasonality, measured in terms of difference between spring and autumn plots, played a minimum role in explaining differences of diversity. Nevertheless autumn diversity values were slightly higher than those of spring, except for crops.     

Short-term effects of an exceptionally hot and dry summer on decomposition of surface peat in a restored temperate bog

The restoration of drained peat bogs in Northwest (NW) Europe is an important task of soil protection, but needs to cope with warmer and drier summers. Our examination took place in the Pietzmoor bog (Schneverdingen, NW Germany) that had been drained for fuel peat extraction until the 1970s and rewetted since then. We determined carbon dioxide (CO₂) efflux in situ and in laboratory incubations. Also, we analyzed pore water for dissolved organic carbon (DOC), total and dissolved organic N (DON), nitrate (NO₃^–) and ammonium (NH₄⁺) concentration. In Schneverdingen, the summer 2003 was record-breaking hot (mean temperature June to August elevated > 3 K compared to long-term average) and dry (precipitation during the same period < 59% of long-term average). In July 2003, the water table in the Pietzmoor subsided to > 42 cm below the surface in July 2003, when in situ soil CO₂ efflux was up to 23.4 g m^–2 d^–1 compared to 15.7 g m^–2 d^–1 in September. Prior to March 2003, DOC concentrations in pore water were < 180 mg l^–1 and NH₄⁺ was the dominant fraction of mineral N. In July 2003, DOC concentration rose to 249 g l^–1, DON concentrations more than doubled, and NO₃^– became the dominant fraction of mineral N. Due to the increased future likelihood of hot and dry summers in NW Germany, peat bog restoration efforts need take care that a water table close to the surface is maintained.     

Survival of faecal coliforms in four different types of sludge-amended soils in Botswana

This study aimed at identifying the factors that affected the survival of faecal coliforms as measured by E. coli in four types of soils in Botswana which were amended with sewage sludge. Physico-chemical and biochemical properties and coliform population in the different soils, sludge, and soil/sludge mixtures were determined after sampling, on composing the soil/sludge mixtures, and 90 days after composing. Coliform population in the different soil/sludge mixtures decreased by about 90% after 90 days. The age of the sludge used and the rate at which it was applied to the soils initially determined the population of E. coli in each soil/sludge mixture, but after 90 days, differences inherent in the different soil types were the main determinants of the E. coli population. Percentage reduction of coliforms in Type 1 sludge mixtures were lower (38%) than in Type 2 sludge mixtures (57%). Up to 79.8% of the reduction observed in E. coli population in the Barolong luvisol-sludge mixtures after 90 days was caused by reduction in pH and moisture content, while 72.6%, 84.5% and 55.1% of the reduction in E. coli population in Tuli luvisol-, arenosol- and vertisol-sludge mixtures, respectively, was accounted for by the reduction in moisture content and Olsen P concentration. Coliform survival rates varied with soil types being 12%, 6.4%, 5.3% and 5.8% for the vertisol, arenosol, Barolong luvisol and Tuli luvisol, respectively. A minimum period of 90 days should be allowed between when sludge is applied to similar soils and when seeds are sown. The exact period should, however, be determined by the properties of the soil with fine-textured soils requiring a longer period than coarse-textured soils.