Responses of the soil nematode community to management of hybrid napiergrass: The trade-off between positive and negative effects

An orthogonal experiment (form L₁₆(4⁵)) was used to investigate how the soil nematode community (density, diversity, and faunal structure) and soil health were affected by hybrid napiergrass management. The experiment included four levels of the each of the following main factors: nitrogen fertilization, cutting frequency, cutting intensity, and irrigation. The soil nematode community was affected more by nitrogen fertilization and irrigation than by cutting frequency and cutting intensity. Hybrid napiergrass develops a large root system and the carbon stored in the roots might have buffered any adverse effects of cutting on soil nematodes in the present study. The responses to fertilization indicated that fertilization had both positive and negative effects on the soil community and that the net effect depended on the level of fertilization. Additional water applied in irrigation was detrimental to soil nematode communities in that it might reduce the oxygen content of soil and also increases the potential for the leaching of nutrients from soil. Additionally, we suggest that moderate N fertilization (460 kg ha⁻¹ yr⁻¹), moderate irrigation (one time yr⁻¹ during the dry season), and cutting (three times per year at 20 cm height) will maintain soil health and provide substantial hybrid napiergrass yields.     

Effect of subsurface clay on nematode communities in a sandy soil

A variety of soil properties can directly or indirectly affect nematode community structure. The effects of subsurface clay content (at 20–40 cm depth) on nematodes in the surface layer (0–20 cm depth) of a sandy soil were examined in field experiments in Florida, USA. Plots were established in a site with a relatively uniform sandy upper soil layer (88–91% sand and 5–7% clay at 0–20 cm depth) but with varying levels of clay in the subsurface layer (3–35% clay at 20–40 cm depth). Nematode numbers in the surface soil layer were affected by the amount of clay in the subsurface layer. Population densities of a number of different nematode genera were greater in the surface layer of plots with 35% subsurface clay than in plots with 3% subsurface clay. Indices of nematode community structure were largely unaffected, since effects of subsurface clay were observed across all nematode groups. Most nematodes (70–80% of total numbers) occurred at 0–20 cm depth, although Teratocephalus was more common at 20–40 than at 0–20 cm. Subsurface clay content indirectly affected soil moisture and other environmental factors in the upper soil layer in which most nematodes reside.     

Diversity and distribution of nematode communities in grasslands from Romania in relation to vegetation and soil characteristics

The nematode communities of 36 grassland ecosystems in Romania, belonging to different plant associations and soil types, were studied. The abundance of nematodes, the species and trophic types present, as well as their distribution in relation to plant community and soil characteristics are analyzed and discussed.The abundance of nematodes from the 36 grasslands studied ranged between 0.41 × 10⁶ and 8.57 × 10⁶ individuals/m², and a total of 121 genera and 145 species of nematodes were found. The highest diversity was found in grasslands developed on brown earth soil (65–67 genera and 74–76 species), with least diversity in those evolving on podzol and lithosol (33–36 genera with 25–28 identified species). Most of the dominant taxa were found in specific soil layers; some obligate plant parasitic genera (e.g., Paratylenchus, Rotylenchus, Criconema) showed preference for deeper soil layers. The nematode diversity index (H′), with values ranging between 2.38 and 3.47, did not differ significantly between the different types of grasslands. Plant feeding, bacterial feeding, hyphal feeding and omnivorous nematodes were the main groups in mountainous grasslands developed on different soil types. Plant feeding and bacterial feeding nematodes dominated the trophic structure and more plant feeders (62–69%) were found in communities of subalpine and alpine grasslands developed on podzol and alpine meadow soil, than in those developed on rendzina and lithosol (27–33%). The ratio of hyphal feeding to bacterial feeding nematodes (Hf/Bf) is constantly in favour of the bacterial feeding group, the values being an indicator of good soil fertility for most studied grasslands. The nematode communities of grasslands are grouped into six main clusters according to their genera affinity and distinguished by different grassland and soil types. Communities from subalpine grasslands developed on rendzina, acid brown and lithosol have the greatest similarities. An ordination of nematode communities in relation to important environmental variables is presented. Environmental variables relevant in explaining the patterns of nematode composition in grasslands, using canonical correspondence analysis (CCA), are: humus, pH, total nitrogen, exchangeable bases and soil type. No single factor could be selected.     

Naphthalene addition to soil surfaces: A feasible method to reduce soil micro-arthropods with negligible direct effects on soil C dynamics

Soil fauna are a key component of soil biodiversity and a driver of soil functioning. While the importance of soil fauna is well recognized, quantitative estimates of the role of soil fauna on soil biogeochemical processes, such as plant litter decomposition, are limited by methodological constraints. The addition of naphthalene, a polycyclic aromatic hydrocarbon (C₁₀H₈), to suppress soil fauna has been used for decades in decomposition experiments, but its efficacy remains questioned. In fact, we lack a rigorous field assessment of the efficacy of naphthalene additions for soil fauna suppression and potential non-target effects on the soil microbial community and carbon cycling. We added naphthalene at a high rate (477 g m⁻²) monthly for 23 months on the bare soil surface of a tallgrass prairie. We determined the effect of such additions on the abundance of nematodes and micro-arthropods along the soil profile to a depth of 20 cm at 11, 16 and 23 months after initiating naphthalene application. We used the variation in the natural ¹³C abundance of the naphthalene (δ¹³C – 25.5‰) as compared to the native soil (δ¹³C ∼ −17‰) to quantify naphthalene contribution to soil CO₂ efflux and microbial biomarkers (PLFA). Naphthalene addition significantly reduced the abundance of oribatid mites (−45%), predatory mites (−52%) and springtails (−49%), but did not affect nematode abundance. The ¹³C abundance of a few Gram-negative (cy17:0, 18:1ω7c, 16:1ω7c), Gram-positive (a15:0, i15:0) and Actinobacteria (10Me-16:0, 10Me-18:0) PLFA markers decreased significantly in naphthalene treated plots, indicating bacterial utilization of naphthalene-derived C. Mixing models showed this contribution to be highly variable, with the highest naphthalene-C incorporation for Gram negative bacteria. Naphthalene-C was not incorporated in fungal PLFAs. This microbial utilization did not affect overall microbial abundance, community structure or activity, estimated as soil respiration. This experiment proves that naphthalene addition is a feasible method to reduce soil micro-arthropods in the field, with negligible direct effects on soil nematodes, microbial abundance and C dynamics.     

Effects of tillage and nitrogen management on soil chemical and physical properties after 23 years of continuous sorghum

Long-term tillage and nitrogen (N) management practices can have a profound impact on soil properties and nutrient availability. A great deal of research evaluating tillage and N applications on soil chemical properties has been conducted with continuous corn (Zea Mays L.) throughout the Midwest, but not on continuous grain sorghum (Sorghum bicolor (L.) Moench). The objective of this experiment was to examine the long-term effects of tillage and nitrogen applications on soil physical and chemical properties at different depths after 23 years of continuous sorghum under no-till (NT) and conventional till (CT) (fall chisel-field cultivation prior to planting) systems. Ammonium nitrate (AN), urea, and a slow release form of urea were surface broadcast at rates of 34, 67, and 135 kg N ha⁻¹. Soil samples were taken to a depth of 15 cm and separated into 2.5 cm increments. As a result of lime applied to the soil surface, soil pH in the NT and CT plots decreased with depth, ranging from 6.9 to 5.7 in the NT plots and from 6.5 to 5.9 in the CT plots. Bray-1 extractable P and NH₄OAc extractable K was 20 and 49 mg kg⁻¹ higher, respectively, in the surface 2.5 cm of NT compared to CT. Extractable Ca was not greatly influenced by tillage but extractable Mg was higher for CT compared to NT below 2.5 cm. Organic carbon (OC) under NT was significantly higher in the surface 7.5 cm of soil compared to CT. Averaged across N rates, NT had 2.7 Mg ha⁻¹ more C than CT in the surface 7.5 cm of soil. Bulk density (Δ_b) of the CT was lower at 1.07 g cm⁻³ while Δ_b of NT plots was 1.13 g cm⁻³. This study demonstrated the effect tillage has on the distribution and concentration of certain chemical soil properties.     

An outline of soil nematode succession on abandoned fields in South Bohemia

Secondary succession of nematodes was studied in 1–48-year-old abandoned fields on cambisols in South Bohemia, Czech Republic, and compared with cultivated field and sub-climax oak forests. Bacterivores were the predominant group in the cultivated field whereas in forests root-fungal feeders (mainly Filenchus) were almost as abundant as bacterivores. The total abundance of nematodes in the cultivated field averaged 868 × 10³ ind m⁻². During the first three years of succession the abundance practically did not change (775 × 10³ ind m⁻²), the fauna was still similar to that in cultivated field but the biomass increased mainly due to Aporcelaimellus. Then the abundance increased up to 3731 × 10³ ind m⁻² in 7–8-year-old abandoned fields, plant parasites (Helicotylenchus) dominated and the fungal-based decomposition channel was activated. Later the abundance stabilised at between 1086 and 1478 × 10³ ind m⁻² in 13–25-year-old successional meadow stages with high population densities of omnivores and predators. The total abundance of nematodes was low in the 12–13-year-old willow shrub stage (594 × 10³ ind m⁻²), increased in the 35–48-year-old birch shrub stage (1760 × 10³ ind m⁻²) and the nematode fauna developed towards a forest community. The diversity and maturity of nematode communities generally increased with the age of abandoned fields but the highest values were in meadow stages (81–113 species, 57–68 genera, MI 2.73–3.30). The development of meadow arrested succession towards forests or diverted succession towards a waterlogged ecosystem. The succession of nematodes was influenced by the method of field abandonment (bare soil vs. legume cover, mowing) that affected the formation of either a shrub or meadow stage, and by the soil water status. The composition of the nematode fauna indicated that the soil food web could recover faster from agricultural disturbance under successive meadows than under shrubs.     

An emerging energetic soil contaminant,CL-20, can affect the soil invertebrate community in a sandy loam soil

We investigated the effects of nitramine explosive CL-20 (China Lake compound 20) on the indigenous soil invertebrate community in Sassafras sandy loam (SSL) soil using a 12-week soil microcosm assay. Freshly collected SSL soil was amended with CL-20 to prepare multiple treatment concentrations ranging from 0 (acetone control) to 10,300 mg kg⁻¹. The selected concentration range of CL-20 adequately assessed the concentration–response relationships for total microarthropods, and for individual microarthropod groups. The overall composition of microarthropod community in SSL soil was not affected by exposure to CL-20, based on the number of taxonomic groups present in the individual treatments after 12 weeks. However, community structure analysis revealed greater sensitivity to CL-20 by predatory mesostigmatid mites. Microarthropod and nematode communities showed contrasting sensitivities to CL-20 in SSL soil. Total numbers of nematodes were either unaffected or significantly (p < 0.05) increased in CL-20 treatments compared with control. Only predator group among nematodes was consistently adversely affected by exposure to CL-20. The abundance of predatory nematodes decreased in a concentration-dependent manner throughout the 12-week exposure. Microcosm assay with corresponding community structure analysis can provide the means for validating the ecotoxicity data from standardized laboratory tests, both complimenting and expanding upon the ecotoxicological significance of data from standardized single-species toxicity tests.     

Deep-burrowing earthworm additions changed the distribution of soil organic carbon in a chisel-tilled soil

We investigated the influence of earthworms on the three-dimensional distribution of soil organic carbon (SOC) in a chisel-tilled soil. By burrowing, foraging, and casting at the surface and throughout the soil, anecic earthworms such as Lumbricus terrestris L. may play a major role in regulating the spatial distribution of organic matter resources both at the surface and within the soil. In the fall of 1994, we manipulated ambient earthworm communities, which were without deep burrowing species, by adding 100 earthworm individuals m⁻² in spring and fall for 3 years. Overall, the biomass of L. terrestris was increased with earthworm additions and total earthworm biomass declined compared with ambient control treatments. To investigate the spatial variability in soil organic carbon due to this shift in earthworm community structure, we sampled soil on a 28×24 cm grid from the surface to 40 cm in four layers, 10 cm deep. Samples were analyzed for total carbon. We found that additions of anecic earthworms significantly increased average soil organic carbon content from 16.1 to 17.9 g C kg⁻¹ for the 0–10 cm soil, and from 12.4 to 14.7 g kg⁻¹ at 10–20-cm depth, and also changed the spatial distribution of soil organic carbon from uniform to patchy, compared with the ambient treatment.     

Effects of cover crop quality and quantity on nematode-based soil food webs and nutrient cycling

Soil food webs cycle nutrients and regulate parasites and pathogens, services essential for both agricultural productivity and ecosystem health. Nematodes provide useful indicators of soil food web dynamics. This study was conducted to determine if nematode soil food web indicators and crop yield can be enhanced by combinations of cover crops in a conservation tillage system. The effects of three cover crop treatments (vetch/pea, oat/wheat and oat/wheat/pea/vetch) with low, medium and high C:N and a bare fallow control were investigated in Davis, CA. Nematode fauna, soil properties and plant productivity were measured. Soil food web indices, including the Enrichment Index (EI), Structure Index (SI), Basal Index (BI), and Channel Index (CI), based on the composition of nematode assemblages, were calculated to infer soil food web condition. Cover cropped tomato/corn rotations had twice the number of enrichment opportunist bacterial feeding nematodes, active participants in nitrogen mineralization, than fallowed tomato/corn rotations (opportunist bacterial feeders = 163 versus 98). In winter fallowed plots food webs were basal, common in disturbed, nutrient-poor conditions (BI = 37). Total number of enrichment opportunist nematodes, soil NH₄-N levels, and inferred nitrogen mineralization, were higher in cover crop treatments with low to mid C:N ratios. Omnivore and predator nematodes were scarce, averaging less than 6 nematodes 100 g^?1 in all treatments. In year one, plant productivity was highest after fallow. In contrast, in year two productivity was highest after cover crops with high nitrogen content and productivity significantly correlated with the structure of the soil fauna. Monitoring the abundance of enrichment opportunists may provide managers with a new tool to evaluate soil food web nitrogen mineralization and plant productivity.     

Improving soil structure by promoting fungal abundance with organic soil amendments

Building soil structure in agroecosystems is important because it governs soil functions such as air and water movement, soil C stabilization, nutrient availability, and root system development. This study examined, under laboratory conditions, effects of organic amendments comprised of differing proportions of labile and semi-labile C on microbial community structure and macroaggregate formation in three variously textured soils where native structure was destroyed. Three amendment treatments were imposed (in order of increasing C lability): vegetable compost, dairy manure, hairy vetch (Vicia villosa Roth). Formation of water stable macroaggregates and changes in microbial community structure were evaluated over 82 days. Regardless of soil type, formation of large macroaggregates (LMA, >2000 μm diameter) was highest in soils amended with vetch, followed by manure, non-amended control, and compost. Vetch and manure had greater microbially available C and caused an increase in fungal biomarkers in all soils. Regression analysis indicated that LMA formation was most strongly related to the relative abundance of the fungal fatty acid methyl ester (FAME) 18:2ω6c (r = 0.55, p < 0.001), fungal ergosterol (r = 0.58, p < 0.001), and microbial biomass (r = 0.57, p < 0.001). Non-metric multidimensional scaling (NMS) ordination of FAME profiles revealed that vetch and manure drove shifts toward fungal-dominated soil microbial communities and greater LMA formation in these soils. This study demonstrated that, due to their greater amounts of microbially available C, vetch or manure inputs can be used to promote fungal proliferation in order to maintain or improve soil structure.     

Responses of soil nematode community structure to different long-term fertilizer strategies in the soybean phase of a soybean–wheat–corn rotation

The impact of long-term application of fertilizers in soybean fields on soil nematode community structure was studied. The long-term application model of fertilizers lasted 13 years in a soybean–wheat–corn rotation, and included three treatments: no fertilizer (NF), chemical fertilizer (urea and ammonium phosphate, CF), and pig manure combined with chemical fertilizer (MCF). The soil nematode community structures and ecological indices were determined from soil samples taken at five soybean growth stages from May to October in the soybean phase of the rotation. Fertilizer application had significant effects on abundance of plant parasites, bacterivores and fungivores (P < 0.05), but had no significant effects on total nematodes and omnivores-predators. Abundance of plant parasites was higher in NF than in MCF and CF, and abundance of bacterivores was highest in MCF. Fertilizer application significantly affected Plant-parasitic Nematode Maturity Index (PPI) and Nematode Channel Ratio (NCR) ecological indices (P < 0.05). Shannon–Weaver Index (H′) and Species Richness (SR) indices were higher in MCF than in either NF or CF. The abundances of total nematode and plant parasites showed increasing trend with soybean growth in all three treatments. This is probably due to soil environment being more suitable for soil nematode survival with more food available for plant parasites as the soybean grows. Soybean growth stage significantly affected the H′, Free Living Nematode Maturity Index (MI) and PPI. Bacterivores significantly correlated with soil nutrient status suggesting that they could be used as a potential indicator of soil fertility.     

Impact of allelochemical exuded from allelopathic rice on soil microbial community

Allelopathic rice releases allelochemicals from its roots to paddy soils at early growth stages to inhibit neighboring weeds. However, little is currently known about the effects of allelochemicals on soil microbes. In this study, we show that allelopathic rice can have great impact on the population and community structure of soil microbes. Allelopathic rice PI312777 seedlings reduced the culturable microbial population and total PLFA when compared to non-allelopathic rice Liaojing-9. Similar results were observed when, instead of growing seedlings, soils were incubated with plant root exudates. This result demonstrates that the composition of root exudates from the rice varieties tested contributes to the soil microbial community. Further experiments showed that the microbial community was affected by the allelochemical 5,4′-dihydroxy-3′,5′-dimethoxy-7-O-β-glucopyranosylflavone exuded from allelopathic rice roots, through immediately hydrolyzing glucose with stimulation on soil bacteria and aglycone (5,7,4′-trihydroxy-3′,5′-dimethoxyflavone) with inhibition on soil fungi. This result indicates that the flavone O-glycoside can provide carbon and interact with soil microbes. PC analysis of the fatty acid data clearly separated the allelopathic PI312777 and the non-allelopathic Liaojing-9 variety (PC1 = 46.4%, PC2 = 20.3%). Similarly, the first principal component (PC1 = 37.4%) together with the second principal component (PC2 = 17.3%) explained 54.7% of the variation between the allelopathic and non-allelopathic root exudates. Furthermore, the canonical correlation between allelopathic root exudates and the flavone O-glycoside was statistically significant (Canonical R = 0.889, χ² (25) = 69.72, p = 0.0041). Although the data generated in this study were not completely consistent between culturable microbes and PLFA profile, it is a fact that variation in soil microbial populations and community structures could be distinguished by the allelopathic and non-allelopathic rice varieties tested. Our results suggest that individual components of rice root exudates, such as allelochemicals from allelopathic rice, can modify the soil microbial community.     

Pig slurry treatment modifies slurry composition,N2O,and CO2 emissions after soil incorporation

The treatment of manures may improve their agricultural value and environmental quality, for instance with regards to greenhouse gases mitigation and enhancement of carbon (C) sequestration. The present study verified whether different pig slurry treatments (i.e. solid/liquid separation and anaerobic digestion) changed slurry composition. The effect of the slurry composition on N₂O and CO₂ emissions, denitrification and soil mineral nitrogen (N), after soil incorporation, was also examined during a 58-day mesocosm study. The treatments included a non-treated pig slurry (NT), the solid fraction (SF), and the liquid fraction (LF) of a pig slurry and the anaerobically digested liquid fraction (DG). Finally, a non-fertilized (N0) and a treatment with urea (UR) were also present.The N₂O emissions measured represented 4.8%, 2.6%, 1.8%, 1.0% and 0.9% of N supplied with slurry/fertilizer for NT, LF, DG, SF and UR, respectively. Cumulative CO₂ emissions ranged from 0.40 g CO₂-C kg^?1 soil (0.38 Mg CO₂-C ha^?1) to 0.80 g CO₂-C kg^?1 soil (0.75 Mg CO₂-C ha^?1). They were highest for SF (56% of C applied), followed by NT (189% of C applied), LF (337% of C applied) and DG (321% of C applied). Ammonium was detected in the soil for all treatments only at day one, while nitrate concentration increased linearly from day 15 to day 58, at a rate independent of the type of slurry/fertilizer applied. The nitrate recovery at day 58 was 39% of the N applied for NT, 19% for SF, 52% for LF, 67% for DG, and 41% for UR. The solid fraction generally produced higher potential denitrification fluxes (75.3 for SF, 56.7 for NT, 53.6 for LF, 47.7 for DG and 39.7 mg N₂O + N₂-N kg^?1 soil for UR). The high variability of actual denitrification results obfuscated any treatment effect.We conclude that treatment strongly affects slurry composition (mainly its C, fibre and NH₄⁺ content), and hence N₂O and CO₂ emission patterns as well as denitrification processes and nitrate availability. In particular, the solid fraction obtained after mechanical separation produced the most pronounced difference, while the liquid fraction and the anaerobically digested liquid fraction did not show significant difference with respect to the original slurry for any of the measured parameters. Combining data from the different fractions we showed that separation of slurry leads to reduced N₂O emissions, irrespective of whether the liquid fraction is digested or not. Furthermore, our results suggested that the default emission factor for N₂O emissions inventory is too low for both the non-treated pig slurry and its liquid fraction (digested or not), and too high for the separated solid fraction and urea.     

Mechanisms of short-term soil carbon storage in experimental grasslands

We investigated the fate of root and litter derived carbon in soil organic matter and dissolved organic matter in soil profiles, in order to explain mechanisms of short-term soil carbon storage. A time series of soil and soil solution samples was investigated at the field site of The Jena Experiment between 2002 and 2004. In addition to the main experiment with C3 plants, a C4 species (Amaranthus retroflexus L.) naturally labeled with ¹³C was grown on an extra plot. Changes in organic carbon concentration in soil and soil solution were combined with stable isotope measurements to follow the fate of plant carbon into the soil and soil solution. A split plot design with plant litter removal versus double litter input simulated differences in biomass input. After 2 years, the no litter and double litter treatment, respectively, showed an increase of 381 g C m^?2 and 263 g C m^?2 to 20 cm depth, while 71 g C m^?2 and 393 g C m^?2 were lost between 20 and 30 cm depth. The isotopic label in the top 5 cm indicated that 115 g C m^?2 and 156 g C m^?2 of soil organic carbon were derived from C4 plant material on the no litter and the double litter treatment, respectively. Without litter, this equals the total amount of 97 g C m^?2 that was newly stored in the same soil depth, whereas with double litter this clearly exceeded the stored amount of 75 g C m^?2. Our results indicate that litter input resulted in lower carbon storage and larger carbon losses and consequently accelerated turnover of soil organic carbon. Isotopic evidence showed that inherited soil organic carbon was replaced by fresh plant carbon near the soil surface. Our results suggest that primarily carbon released from soil organic matter, not newly introduced plant organic matter, was transported in the soil solution. However, the total flow of dissolved organic carbon was not sufficient to explain the observed carbon storage in deeper soil layers, and the existence of additional carbon uptake mechanisms is discussed.     

Influence of carbon amendments on soil denitrifier abundance in soil microcosms

It is known that carbon (C) amendments increase microbial activity in anoxic soil microcosm studies, however the effects on abundance of total and denitrifier bacterial communities is uncertain. Quantitative PCR was used to target the 16S rRNA gene for the total bacterial community, the nosZ functional gene to reflect a broad denitrifier community, and functional genes from narrow denitrifier communities represented by Pseudomonas mandelii and related species (cnorB_P) and Bosea/Bradyrhizobium/Ensifer spp. (cnorB_B). Repacked soil cores were amended with varying amounts of glucose and red clover plant tissue (0–1000 mg C kg^? 1 of soil) and incubated for 96 h. Carbon amendment significantly increased respiration as measured by cumulative CO₂ emissions. Inputs of red clover or glucose at 1000 mg C kg^? 1 of soil caused increased abundance in the total bacteria under the conditions used. There was about an approximate 2-fold increase in the abundance of bacteria bearing the nosZ gene, but only in treatments receiving 500 or 1000 mg C kg^? 1 of soil of glucose or red clover, respectively. Additions of ≥ 500 mg C kg^? 1 soil of red clover and ≥ 250 mg C kg^? 1 of glucose increased cnorB_P-gene bearing denitrifiers. Changes in abundance of the targeted communities were related to C availability in soil, as indicated by soil respiration, regardless of C source. Applications of C amendments at rates that would occur in agricultural soils not only increase microbial activity, but can also induce changes in abundance of total bacterial and denitrifier communities in studies of anoxic soil microcosms.     

Influence of organic Crotalaria juncea hay and ammonium nitrate fertilizers on soil nematode communities

Comparisons of organic and inorganic fertilizer effects on nematode communities depend on the specific organic fertilizer used. Field experiments were conducted during 2001 and 2002 in a squash (Cucurbita pepo) agroecosystem to determine if applying sunn hemp (Crotalaria juncea) hay as an organic fertilizer improved nematode communities involved in soil nutrient cycling compared to an equivalent N rate (100 kg N/ha) of ammonium nitrate. Fertilizer source had minimal effect on nematode communities in 2001 when treatments were applied after a winter cover crop of oats (Avena sativa), but differences (P ≤ 0.05) between the fertilizer sources occurred in 2002 when no winter cover cropping preceded squash. Fertilization with sunn hemp hay increased abundance of the bacterivore guilds Ba₁ and Ba₂, and increased fungivores at the end of the experiment. Compared to ammonium nitrate, fertilization with sunn hemp hay resulted in a community with lower maturity index, higher enrichment index, and lower channel index, consistent with a disturbed and nutrient-enriched soil food web undergoing bacterial decomposition. Sunn hemp hay occasionally stimulated omnivorous nematodes, but suppressed plant-parasitic nematodes relative to ammonium nitrate fertilizer. Increasing the sunn hemp hay rate to 200 kg N/ha increased the abundance of bacterivores, fungivores, and predatory nematodes, and total nematode abundance compared to hay at 100 kg N/ha. Fertilization with ammonium nitrate increased the percentage of herbivores, but reduced percentage and abundance of omnivores. In conclusion, sunn hemp fertilizer maintained greater numbers of nematodes involved in nutrient cycling as compared to ammonium nitrate.     

Effect of fertilizer,herbicide and grazing management of pastures on plant and soil communities

Increases in fertilizer inputs and livestock numbers affect plant species composition and richness; this in turn can affect the biodiversity of soil fauna and nutrient cycling in pastures. We selected two adjacent farmlets to study these effects. Since 1980, one farmlet (LF) had not received superphosphate fertilizer (SSP) and has a low stock density of sheep, and the other (HF) had received 37.5 g SSP m⁻² y⁻¹ and has a high stock density. In 2004, at both farmlets, we commenced treatments for 4 years, adding urea to raise N status, and non-residual selective herbicide to remove broadleaf species. Long-term SSP addition and increased sheep numbers, and added urea increased herbage production but reduced plant diversity. The effect of treatments on most of the soil biochemical and biological properties varied between years. This may have partly arisen from an infestation with Wiseana caterpillars in the first winter, causing resources to be low and total soil carbon (C) to be reduced by 4–8%; total C did, however, recover in later years. The urea and herbicide treatments caused greater changes above-ground than below-ground, but they did reduce soil microbial C and N and nematode diversity; urea at LF increased mineralizable N to the levels found at HF. On an area basis, HF generally had higher total C and N, earthworm and nematode numbers (including bacterial feeders, predators and omnivores), and nematode diversity, and greater values for the nematode channel ratio, than did LF. In contrast, the ratios of microbial C/total C and microbial N/total N, total mite numbers (including Oribatida, but not other mite groups), and fungal-feeding nematode numbers were higher at LF than at HF. Canonical correlation analysis suggested the plant and soil nematode communities responded in tandem and in predictable ways to the same environmental factors. Increased quantity and quality of inputs disadvantaged the fungal-based energy channel, with a measurable decline in the quantity of fungal phospholipid fatty acids (PLFAs). While the quantity of bacterial PLFAs appeared to be unaffected by greater plant-derived inputs, the greater numbers of bacterial-feeding nematodes at the HF farmlet suggests the activity and flow of energy and nutrients through the bacterial community would be more important in the HF than the LF farmlet. Overall our results suggest the shift from fungal to bacterial pathways may lead to soil microbial/microfaunal interactions that retain less reactive N within soil biomass, with a consequent greater risk of N loss.     

Soil organic carbon and nitrogen in a Mollisol in central Ohio as affected by tillage and land use

Minimum tillage practices are known for increasing soil organic carbon (SOC). However, not all environmental situations may manifest this potential change. The SOC and N stocks were assessed on a Mollisol in central Ohio in an 8-year-old tillage experiment as well as under two relatively undisturbed land uses; a secondary forest and a pasture on the same soil type. Cropped systems had 51±4 (equiv. mass) Mg ha⁻¹ lower SOC and lower 3.5±0.3 (equiv. mass) Mg ha⁻¹ N in the top 30 cm soil layer than under forest. Being a secondary forest, the loss in SOC and N stocks by cultivation may have been even more than these reported herein. No differences among systems were detected below this depth. The SOC stock in the pasture treatment was 29±3 Mg ha⁻¹ greater in the top 10 cm layer than in cultivated soils, but was similar to those under forest and no-till (NT). Among tillage practices (plow, chisel and NT) only the 0–5 cm soil layer under NT exhibited higher SOC and N concentrations. An analysis of the literature of NT effect on SOC stocks, using meta-analysis, suggested that NT would have an overall positive effect on SOC sequestration rate but with a greater variability of what was previously reported. The average sequestration rate of NT was 330 kg SOC ha⁻¹ year⁻¹ with a 95% confidence interval ranging from 47 to 620 kg SOC ha⁻¹ year⁻¹. There was no effect of soil texture or crop rotation on the SOC sequestration rate that could explain this variability. The conversion factor for SOC stock changes from plow to NT was equal to 1.04. This suggests that the complex mechanisms and pathways of SOC accrual warrant a cautious approach when generalizing the beneficial changes of NT on SOC stocks.     

Response of microbial communities to different doses of chromate in soil microcosms

The toxic effect of chromate on soil microbial communities is not well documented, although microorganisms control biogeochemical cycling, contribute to formation of soil structure, regulate the fate of organic matter applied to soil. In this study the effects of short- and middle-term chromate on the soil microbial community were investigated. The shifts in the size and in the diversity of culturable heterotrophic bacterial community, the resistance to Cr(VI) of heterotrophic bacteria, the presence of cyanobacteria, the activity of 19 enzymes, and the ATP content were monitored over time (120 days) in soil microcosms artificially contaminated with three concentrations of chromate (50, 250 and 1000 mg kg⁻¹ soil). The chromate contamination affected the structure and the diversity of the soil bacterial community. Bacterial strains isolated from the microcosm contaminated with the highest concentration of chromate were identified by 16S rDNA gene sequencing. All isolates belonged to the genus Pseudomonas, were able to reduce Cr(VI), and showed a high resistance to chromate. To our knowledge, this is the first report that shows Pseudomonas strains having the capability to resist up to 40 mM of Cr(VI) on minimal medium. The cyanobacterial group was more sensitive to chromate contamination than culturable heterotrophic bacteria. No cyanobacterial growth was detected in enrichment cultures from the soil polluted with the highest chromate concentration. Some enzymes were inhibited by high concentrations of chromate, whereas others were stimulated. The ATP content in microcosms was strongly affected by chromate. We conclude that the soil microbial community responds to chromate pollution through changes in community structure, in metabolic activity, and in selection for Cr(VI)-resistance.     

Effects of mercury on soil microbial communities in tropical soils of French Guyana

In gold mining regions, the risk of soil pollution by mercury is a major environmental hazard, especially in tropical areas where soil microflora plays a major part in soil functioning, major bio-geochemical cycles and carbon turn-over. The impact of mercury pollution on soil microflora should thus be carefully assessed in such environments while taking into consideration the specificities of tropical soils. The aim of this study was to compare the effects of mercury (0, 1 and 20 μg of inorganic mercury per gram of soil) on the functional diversity and genetic structure of microbial communities in a tropical soil. We investigated the effects of mercury on tropical soil microflora using soil microcosms spiked with mercury and incubated at 28 °C for 1 month. Microcosm flora, its biomass and its activity, as well as its functional and genetic structure, were followed by cultural methods, measures of respiration, ECOLOG plates, and DGGE (denaturing gel gradient electrophoresis), respectively. Fate of total and bioavailable mercury was estimated by CVAFS (cold vapor atomic fluorescence spectrometry). Results obtained for the microcosms enriched with only 1 μg g^?1 mercury were indistinguishable from controls. Conversely, in the presence of high mercury contents (20 μg g⁽¹), an immediate effect was measured on soil respiration, functional diversity (ECOLOG plates) and genetic structure (DGGE), although no significant effect was observed on plate counts or microbial biomass. In addition, whereas microbial activities (respiration and functional diversity) rapidly regained control values, a lasting effect of the high mercury concentration was observed on the genetic structure of the soil microbial community. These modifications took place during the first week of incubation when total mercury concentration was declining and bioavailable mercury was at its highest.This multiple approach study is one of the first attempts at investigating the effects of mercury on soil microbial communities in tropical soils. Our results demonstrate that in the tropical soil under study, mercury affects the soil microbial communities in a different manner than was previously reported in temperate soils. Furthermore, mercury toxicity on soil microbes may be modulated by typical tropical soil characteristics.