Naphthalene addition to soil surfaces: A feasible method to reduce soil micro-arthropods with negligible direct effects on soil C dynamics

Soil fauna are a key component of soil biodiversity and a driver of soil functioning. While the importance of soil fauna is well recognized, quantitative estimates of the role of soil fauna on soil biogeochemical processes, such as plant litter decomposition, are limited by methodological constraints. The addition of naphthalene, a polycyclic aromatic hydrocarbon (C₁₀H₈), to suppress soil fauna has been used for decades in decomposition experiments, but its efficacy remains questioned. In fact, we lack a rigorous field assessment of the efficacy of naphthalene additions for soil fauna suppression and potential non-target effects on the soil microbial community and carbon cycling. We added naphthalene at a high rate (477 g m⁻²) monthly for 23 months on the bare soil surface of a tallgrass prairie. We determined the effect of such additions on the abundance of nematodes and micro-arthropods along the soil profile to a depth of 20 cm at 11, 16 and 23 months after initiating naphthalene application. We used the variation in the natural ¹³C abundance of the naphthalene (δ¹³C – 25.5‰) as compared to the native soil (δ¹³C ∼ −17‰) to quantify naphthalene contribution to soil CO₂ efflux and microbial biomarkers (PLFA). Naphthalene addition significantly reduced the abundance of oribatid mites (−45%), predatory mites (−52%) and springtails (−49%), but did not affect nematode abundance. The ¹³C abundance of a few Gram-negative (cy17:0, 18:1ω7c, 16:1ω7c), Gram-positive (a15:0, i15:0) and Actinobacteria (10Me-16:0, 10Me-18:0) PLFA markers decreased significantly in naphthalene treated plots, indicating bacterial utilization of naphthalene-derived C. Mixing models showed this contribution to be highly variable, with the highest naphthalene-C incorporation for Gram negative bacteria. Naphthalene-C was not incorporated in fungal PLFAs. This microbial utilization did not affect overall microbial abundance, community structure or activity, estimated as soil respiration. This experiment proves that naphthalene addition is a feasible method to reduce soil micro-arthropods in the field, with negligible direct effects on soil nematodes, microbial abundance and C dynamics.     

Nitrogen fertilization and cropping systems effects on soil organic carbon and total nitrogen pools under chisel-plow tillage in Illinois

Agricultural soils can be a major sink for atmospheric carbon (C) with adoption of recommended management practices (RMPs). Our objectives were to evaluate the effects of nitrogen (N) fertilization and cropping systems on soil organic carbon (SOC) and total N (TN) concentrations and pools. Replicated soil samples were collected in May 2004 to 90 cm depth from a 23-year-old experiment at the Northwestern Illinois Agricultural Research and Demonstration Center, Monmouth, IL. The SOC and TN concentrations and pools, soil bulk density (ρ_b) and soil C:N ratio were measured for five N rates [0 (N₀), 70 (N₁), 140 (N₂), 210 (N₃) and 280 (N₄) kg N ha⁻¹] and two cropping systems [continuous corn (Zea mays L.) (CC), and corn–soybean (Glycine max (L.) Merr.) rotation (CS)]. Long-term N fertilization and cropping systems significantly influenced SOC concentrations and pools to 30 cm depth. The SOC pool in 0–30 cm depth ranged from 68.4 Mg ha⁻¹ for N₀ to 75.8 Mg ha⁻¹ for N₄. Across all N treatments, the SOC pool in 0–30 cm depth for CC was 4.7 Mg ha⁻¹ greater than for CS. Similarly, TN concentrations and pools were also significantly affected by N rates. The TN pool for 0–30 cm depth ranged from 5.36 Mg ha⁻¹ for N₀ to 6.14 Mg ha⁻¹ for N₄. In relation to cropping systems, the TN pool for 0–20 cm depth for CC was 0.4 Mg ha⁻¹ greater than for CS. The increase in SOC and TN pools with higher N rates is attributed to the increased amount of biomass production in CC and CS systems. Increasing N rates significantly decreased ρ_b for 0–30 cm and decreased the soil C:N ratio for 0–10 cm soil depth. However, none of the measured soil properties were significantly correlated with N rates and cropping systems below 30 cm soil depth. We conclude that in the context of developing productive and environmentally sustainable agricultural systems on a site and soil specific basis, the results from this study is helpful to strengthening the database of management effects on SOC storage in the Mollisols of Midwestern U.S.     

Response of labile soil organic matter to changes in forest vegetation in subtropical regions

Labile soil organic matter (SOM) can sensitively respond to changes in land use and management practices, and has been suggested as an early and sensitive indicator of SOM. However, knowledge of effects of forest vegetation type on labile SOM is still scarce, particularly in subtropical regions. Soil microbial biomass C and N, water-soluble soil organic C and N, and light SOM fraction in four subtropical forests were studied in subtropical China. Forest vegetation type significantly affected labile SOM. Secondary broadleaved forest (SBF) had the highest soil microbial biomass, basal respiration and water-soluble SOM, and the pure Cunninghamia lanceolata plantation (PC) the lowest. Soil microbial biomass C and N and respiration were on average 100%, 104% and 75%, respectively higher in the SBF than in the PC. The influence of vegetation on water-soluble SOM was generally larger in the 0–10 cm soil layer than in the 10–20 cm. Cold- and hot-water-soluble organic C and N were on average 33–70% higher in the SBF than in the PC. Cold- and hot-soluble soil organic C concentrations in the coniferous-broadleaved mixed plantations were on average 38.1 and 25.0% higher than in the pure coniferous plantation, and cold- and hot-soluble soil total N were 51.4 and 14.1% higher, respectively. Therefore, introducing native broadleaved trees into pure coniferous plantations increased water-soluble SOM. The light SOM fraction (free and occluded) in the 0–10 cm soil layer, which ranged from 11.7 to 29.2 g kg⁻¹ dry weight of soil, was strongly affected by vegetation. The light fraction soil organic C, expressed as percent of total soil organic C, ranged from 18.3% in the mixed plantations of C. lanceolata and Kalopanax septemlobus to 26.3% in the SBF. In addition, there were strong correlations among soil organic C and labile fractions, suggesting that they were in close association and partly represented similar C pools in soils. Our results indicated that hot-water-soluble method could be a suitable measure for labile SOM in subtropical forest soils.     

Distinct microbial and faunal communities and translocated carbon in Lumbricus terrestris drilospheres

Lumbricus terrestris is a deep-burrowing anecic earthworm that builds permanent, vertical burrows with linings (e.g., drilosphere) that are stable and long-lived microhabitats for bacteria, fungi, micro- and mesofauna. We conducted the first non-culture based field study to assess simultaneously the drilosphere (here sampled as 0–2 mm burrow lining) composition of microbial and micro/mesofaunal communities relative to bulk soil. Our study also included a treatment of surface-applied ¹³C- and ¹⁵N-labeled plant residue to trace the short-term (40 d) translocation of residue C and N into the drilosphere, and potentially the assimilation of residue C into drilosphere microbial phospholipid fatty acids (PLFAs). Total C concentration was 23%, microbial PLFA biomass was 58%, and PLFAs associated with protozoa, nematodes, Collembola and other fauna were 200-to-300% greater in the drilosphere than in nearby bulk soil. Principal components analysis of community PLFAs revealed that distributions of Gram-negative bacteria and actinomycetes and other Gram-positive bacteria were highly variable among drilosphere samples, and that drilosphere communities were distinct from bulk soil communities due to the atypical distribution of PLFA biomarkers for micro- and mesofauna. The degree of microbial PLFA ¹³C enrichment in drilosphere soils receiving ¹³C-labeled residue was highly variable, and only one PLFA, 18:1ω9c, was significantly enriched. In contrast, 11 PLFAs from diverse microbial groups where enriched in response to residue amendment in bulk soil 0–5 cm deep. Among control soils, however, a significant δ¹³C shift between drilosphere and bulk soil at the same depth (5–15 cm) revealed the importance of L. terrestris for translocating perennial ryegrass-derived C into the soil at depth, where we estimated the contribution of the recent grass C (8 years) to be at least 26% of the drilosphere soil C. We conclude that L. terrestris facilitates the translocation of plant C into soil at depth and promotes the maintenance of distinct soil microbial and faunal communities that are unlike those found in the bulk soil.     

Soil organic matter assessment in natural regrowth,Pueraria phaseoloides and Mucuna pruriens fallow

Biological and chemical components of soil fertility were quantified under three different fallow types and related to soil quality of an Ultisol in southern Cameroon at the end of a 9-month fallow. Soil organic matter (SOM), soil exchangeable Ca²⁺, Mg²⁺ and K⁺ and available P concentrations, effective cation exchange capacity (ECEC) and, soil acidity in the 0–10 and 10–20 cm layers were evaluated under: natural regrowth mainly composed of Chromolaena odorata and the legume cover crops velvet bean (Mucuna pruriens var. utilis) and kudzu (Pueraria phaseoloides). SOM quality was assessed by C mineralisation during a 4-week incubation at 28°C in the laboratory. In addition, particulate organic matter (POM), the most active part of SOM, was fractionated by wet sieving into coarse (4000–2000 μm), medium (2000–250 μm) and fine (250–53 μm) particle size classes and analysed for C and N contents. Under Mucuna, Ca²⁺, K⁺ and P concentrations, ECEC and soil pH were higher and C mineralisation was lower than under natural regrowth and Pueraria in 0–10 cm depth. Soil under natural regrowth had a higher C mineralisation in 0–10 cm indicating more labile SOM than in Pueraria and Mucuna fallow. There was no difference in weight of total POM, for any of the fractions between the three fallow types. However, both leguminous fallow species increased POM quality through a higher N content. Compared to natural regrowth, Pueraria increased N content in coarse POM by 36% in the 0–10 cm layer and by 19% (coarse POM) and 35% (medium POM) in the 10–20 cm layer. Mucuna increased N content in the 0–10 cm layer by 12% (coarse POM), and by 19% (fine POM), compared to natural regrowth. According to the differences in nutrient concentrations, soil acidity and the biological stability of SOM, the three fallow types ranked: Mucuna≥Pueraria>natural regrowth. However, in terms of POM quality the ranking was: Pueraria>Mucuna>natural regrowth.     

Variable use of plant- and soil-derived carbon by microorganisms in agricultural soils

In this study we used compound specific ¹³C and ¹⁴C isotopic signatures to determine the degree to which recent plant material and older soil organic matter (SOM) served as carbon substrates for microorganisms in soils. We determined the degree to which plant-derived carbon was used as a substrate by comparison of the ¹³C content of microbial phospholipid fatty acids (PLFA) from soils of two sites that had undergone a vegetation change from C3 to C4 plants in the past 20-30 years. The importance of much older SOM as a substrate was determined by comparison of the radiocarbon content of PLFA from soils of two sites that had different ¹⁴C concentrations of SOM.The ¹³C shift in PLFA from the two sites that had experienced different vegetation history indicated that 40-90% of the PLFA carbon had been fixed since the vegetation change took place. Thus PLFA were more enriched in ¹³C from the new C4 vegetation than it was observed for bulk SOM indicating recent plant material as preferentially used substrate for soil microorganisms. The largest ¹³C shift of PLFA was observed in the soil that had high ¹⁴C concentrations of bulk SOM. These results reinforce that organic carbon in this soil for the most part cycles rapidly. The degree to which SOM is incorporated into microbial PLFA was determined by the difference in ¹⁴C concentration of PLFA derived from two soils one with high ¹⁴C concentrations of bulk SOM and one with low. These results showed that 0-40% of SOM carbon is used as substrate for soil microorganisms. Furthermore a different substrate usage was identified for different microorganisms. Gram-negative bacteria were found to prefer recent plant material as microbial carbon source while Gram-positive bacteria use substantial amounts of SOM carbon. This was indicated by ¹³C as well as ¹⁴C signatures of their PLFA. Our results find evidence to support ‘priming’ in that PLFA indicative of Gram-negative bacteria associated with roots contain both plant- and SOM-derived C. Most interestingly, we find PLFA indicative of archeobacteria (methanothrophs) that may indicate the use of other carbon sources than plant material and SOM to a substantial amount suggesting that inert or slow carbon pools are not essential to explain carbon dynamics in soil.     

Formation and use of microbial residues after adding sugarcane sucrose to a heated soil devoid of soil organic matter

A 67-day incubation experiment was carried out with a soil initially devoid of any organic matter due to heating, which was amended with sugarcane sucrose (C₄-sucrose with a δ¹³C value of ?10.5‰), inorganic N and an inoculum for recolonisation and subsequently at day 33 with C₃-cellulose (δ¹³C value of ?23.4‰). In this soil, all organic matter is in the microbial biomass or in freshly formed residues, which makes it possible to analyse more clearly the role of microbial residues for decomposition of N-poor substrates. The average δ¹³C value over the whole incubation period was ?10.7‰ in soil total C in the treatments without C₃-cellulose addition. In the CO₂ evolved, the δ¹³C values decreased from ?13.4‰ to ?15.4‰ during incubation. In the microbial biomass, the δ¹³C values increased from ?11.5‰ to ?10.1‰ at days 33 and 38. At day 67, 36% of the C₄-sucrose was left in the treatment without a second amendment. The addition of C₃-cellulose resulted in a further 7% decrease, but 4% of the C₃-cellulose was lost during the second incubation period. Total microbial biomass C declined from 200 μg g^?1 soil at day 5 to 70 μg g^?1 soil at day 67. Fungal ergosterol increased to 1.5 μg g^?1 soil at day 12 and declined more or less linearly to 0.4 μg g^?1 soil at day 67. Bacterial muramic acid declined from a maximum of 35 μg g^?1 soil at day 5 to a constant level of around 16 μg g^?1 soil. Glucosamine showed a peak value at day 12. Galactosamine remained constant throughout the incubation. The fungal C/bacterial C ratio increased more or less linearly from 0.38 at day 5 to 1.1 at day 67 indicating a shift in the microbial community from bacteria to fungi during the incubation. The addition of C₃-cellulose led to a small increase in C₃-derived microbial biomass C, but to a strong increase in C₄-derived microbial biomass C. At days 45 and 67, the addition of N-free C₃-cellulose significantly decreased the C/N ratio of the microbial residues, suggesting that this fraction did not serve as an N-source, but as an energy source.     

Mechanisms of short-term soil carbon storage in experimental grasslands

We investigated the fate of root and litter derived carbon in soil organic matter and dissolved organic matter in soil profiles, in order to explain mechanisms of short-term soil carbon storage. A time series of soil and soil solution samples was investigated at the field site of The Jena Experiment between 2002 and 2004. In addition to the main experiment with C3 plants, a C4 species (Amaranthus retroflexus L.) naturally labeled with ¹³C was grown on an extra plot. Changes in organic carbon concentration in soil and soil solution were combined with stable isotope measurements to follow the fate of plant carbon into the soil and soil solution. A split plot design with plant litter removal versus double litter input simulated differences in biomass input. After 2 years, the no litter and double litter treatment, respectively, showed an increase of 381 g C m^?2 and 263 g C m^?2 to 20 cm depth, while 71 g C m^?2 and 393 g C m^?2 were lost between 20 and 30 cm depth. The isotopic label in the top 5 cm indicated that 115 g C m^?2 and 156 g C m^?2 of soil organic carbon were derived from C4 plant material on the no litter and the double litter treatment, respectively. Without litter, this equals the total amount of 97 g C m^?2 that was newly stored in the same soil depth, whereas with double litter this clearly exceeded the stored amount of 75 g C m^?2. Our results indicate that litter input resulted in lower carbon storage and larger carbon losses and consequently accelerated turnover of soil organic carbon. Isotopic evidence showed that inherited soil organic carbon was replaced by fresh plant carbon near the soil surface. Our results suggest that primarily carbon released from soil organic matter, not newly introduced plant organic matter, was transported in the soil solution. However, the total flow of dissolved organic carbon was not sufficient to explain the observed carbon storage in deeper soil layers, and the existence of additional carbon uptake mechanisms is discussed.     

Microbially available carbon in buried riparian soils in a glaciated landscape

Buried horizons and lenses in riparian soil profiles harbor large amounts of carbon relative to the surrounding soil horizons. Because these buried soil horizons, as well as deep surface horizons, frequently lie beneath the water table, their impact on nitrogen transport across the terrestrial–aquatic interface depends upon their frequency and spatial distribution, and upon the lability of associated organic matter. We collected samples of 51 soil horizons from 14 riparian zones Rhode Island, USA, where soil profiles are characterized by glacial outwash and alluvial deposits. These soil samples came from as deep as 2 m and ranged in carbon content from <1% to 44% in a buried O horizon 54–74 cm deep. We used these samples to: (1) determine the extent to which carbon in buried horizons, and deep surface horizons, is potentially microbially available; (2) identify spatial patterns of carbon mineralization associated with surface and buried horizons; and (3) evaluate likely relationships between soil horizon types, chemical characteristics and carbon mineralization. Carbon mineralization rates associated with buried horizons during anaerobic incubations ranged from 0.0001 to 0.0175 μmol C kg soil^?1 s^?1 and correlated positively with microbial biomass (R=0.89, P<0.0001, n=21). Excluding surface O horizons from the analysis, carbon mineralization varied systematically with horizon type (surface A, buried A, buried O, lenses, A/C, B, C) (P<0.05) but not with depth or depth x horizon interaction (overall R²=0.59, P<0.0005, n=47). In contrast to this result and to most published data sets, ¹³C-to-¹²C and ¹⁵N-to-¹⁴N ratios of organic matter declined with depth (¹³C?26.9 to ?29.3 per mil, ¹⁵N+5.6 to ?0.8 per mil). The absence of a relationship between horizon depth and C availability suggests that carbon availability in these buried horizons may be determined by the abundance and quality of organic matter at the time of horizon formation or burial, rather than by duration since burial, and implies that subsurface microbial activity is largely disconnected from surface ecosystems. Our results contribute to the emerging view that buried horizons harbor microbially available C in quantities relevant to ecosystem processes, and suggest that buried C-rich soil horizons need to be incorporated into assessments of the depth of the biologically active zone in near-stream subsurface soils.     

Surface soil responses to silage cropping intensity on a Typic Kanhapludult in the piedmont of North Carolina

Although reduced tillage itself is beneficial to soil quality and farm economics, the amount of crop residues returned to the soil will likely alter the success of a particular conservation tillage system within a farm operation. We investigated the impact of three cropping systems (a gradient in silage cropping intensity) on selected soil physical, chemical, and biological properties in the Piedmont of North Carolina, USA. Cropping systems were: (1) maize (Zea mays L.) silage/barley (Hordeum vulgare L.) silage (high silage intensity), (2) maize silage/winter cover crop (medium silage intensity), and (3) maize silage/barley grain—summer cover crop/winter cover crop (low silage intensity). There was an inverse relationship between silage intensity and the quantity of surface residue C and N contents. With time, soil bulk density at a depth of 0–3 cm became lower and total and particulate C and N fractions, and stability of macroaggregates became higher with lower silage intensity as a result of greater crop residue returned to soil. Soil bulk density at 0–3 cm depth was initially 0.88 Mg m⁻³ and increased to 1.08 Mg m⁻³ at the end of 7 years under high silage intensity. Total organic C at 0–20 cm depth was initially 11.7 g kg⁻¹ and increased to 14.3 g kg⁻¹ at the end of 7 years under low silage intensity. Stability of macroaggregates at 0–3 cm depth at the end of 7 years was 99% under low silage intensity, 96% under medium silage intensity, and 89% under high silage intensity. Soil microbial biomass C at 0–3 cm depth at the end of 7 years was greater with low silage intensity (1910 mg kg⁻¹) than with high silage intensity (1172 mg kg⁻¹). Less intensive silage cropping (i.e., greater quantities of crop residue returned to soil) had a multitude of positive effects on soil properties, even in continuous no-tillage crop production systems. An optimum balance between short-term economic returns and longer-term investments in improved soil quality for more sustainable production can be achieved in no-tillage silage cropping systems.     

Deep-burrowing earthworm additions changed the distribution of soil organic carbon in a chisel-tilled soil

We investigated the influence of earthworms on the three-dimensional distribution of soil organic carbon (SOC) in a chisel-tilled soil. By burrowing, foraging, and casting at the surface and throughout the soil, anecic earthworms such as Lumbricus terrestris L. may play a major role in regulating the spatial distribution of organic matter resources both at the surface and within the soil. In the fall of 1994, we manipulated ambient earthworm communities, which were without deep burrowing species, by adding 100 earthworm individuals m⁻² in spring and fall for 3 years. Overall, the biomass of L. terrestris was increased with earthworm additions and total earthworm biomass declined compared with ambient control treatments. To investigate the spatial variability in soil organic carbon due to this shift in earthworm community structure, we sampled soil on a 28×24 cm grid from the surface to 40 cm in four layers, 10 cm deep. Samples were analyzed for total carbon. We found that additions of anecic earthworms significantly increased average soil organic carbon content from 16.1 to 17.9 g C kg⁻¹ for the 0–10 cm soil, and from 12.4 to 14.7 g kg⁻¹ at 10–20-cm depth, and also changed the spatial distribution of soil organic carbon from uniform to patchy, compared with the ambient treatment.     

Soil microbial biomass and organic matter fractions during transition from conventional to organic farming systems

The aim of this study was to investigate the response of soil microbial biomass and organic matter fractions during the transition from conventional to organic farming in a tropical soil. Soil samples were collected from three different plots planted with Malpighia glaba: conventional plot with 10 years (CON); transitional plot with 2 years under organic farming system (TRA); organic plot with 5 years under organic farming system (ORG). A plot under native vegetation (NV) was used as a reference. Soil microbial biomass C (MBC) and N (MBN), soil organic carbon (SOC) and total N (TN), soil organic matter fractioning and microbial indices were evaluated in soil samples collected at 0–5, 5–10, 10–20 and 20–40 cm depth. SOC and fulvic acids fraction contents were higher in the ORG system at 0–5 cm and 5–10 cm depths. Soil MBC was highest in the ORG, in all depths, than in others plots. Soil MBN was similar between ORG, TRA and NV in the surface layer. The lowest values for soil MBC and MBN were observed in CON plot. Soil microbial biomass increased gradually from conventional to organic farming, leading to consistent and distinct differences from the conventional control by the end of the second year.     

Soil microbial community responses to dairy manure or ammonium nitrate applications

Soil management practices that result in increased soil C also impact soil microbial biomass and community structure. In this study, the effects of dairy manure applications and inorganic N fertilizer on microbial biomass and microbial community composition were determined. Treatments examined were a control with no nutrient additions (CT), ammonium nitrate at 218 kg N ha⁻¹ (AN), and manure N rates of 252 kg manure-N ha⁻¹ (LM) and 504 kg manure-N ha⁻¹ (HM). All plots were no-till cropped to silage corn (Zea mays, L. Merr) followed by a Crimson clover (Trifolium incarnatum, L.)/annual ryegrass (Lolium multiflorum, Lam.) winter cover crop. Treatments were applied yearly, with two-thirds of the N applied in late April or early May, and the remainder applied in September. Soil samples (0–5, 5–10, and 10–15 cm) were taken in March 1996, prior to the spring nutrient application. Polar lipid fatty acid (PLFA) analysis was used to assess changes in microbial biomass and community structure. Significantly greater soil C, N and microbial biomass in the 0–5 cm depth were observed under both manure treatments than in the CT and AN treatments. There was also a definable shift in the microbial community composition of the surface soils (0–5cm). Typical Gram-negative bacteria PLFA biomarkers were 15 and 27% higher in the LM and HM treatments than in the control. The AN treatment resulted in a 15% decrease in these PLFA compared with the control. Factor analysis of the polar lipid fatty acid profiles from all treatments revealed that the two manure amendments were correlated and could be described by a single factor comprised of typical Gram-negative bacterial biomarkers. The AN treatments from all three depths were also correlated and were described by a second factor comprised of typical Gram-positive bacterial biomarkers. These results demonstrate that soil management practices, such as manuring, that result in accumulations of organic carbon will result in increased microbial biomass and changes in community structure.     

Spatial variability of enzyme activities and microbial biomass in the upper layers of Quercus petraea forest soil

Extracellular lignocellulose-degrading enzymes are responsible for the transformation of organic matter in hardwood forest soils. The spatial variability on a 12 × 12 m plot and vertical distribution (0–8 cm) of the ligninolytic enzymes laccase and Mn-peroxidase, the polysaccharide-specific hydrolytic enzymes endoglucanase, endoxylanase, cellobiohydrolase, 1,4-β-glucosidase, 1,4-β-xylosidase and 1,4-β-N-acetylglucosaminidase and the phosphorus-mineralizing acid phosphatase were studied in a Quercus petraea forest soil profile. Activities of all tested enzymes exhibited high spatial variability in the L and H horizons. Acid phosphatase and 1,4-β-N-acetylglucosaminidase exhibited low variability in both horizons, while the variability of Mn-peroxidase activity in the L horizon, and endoxylanase and cellobiohydrolase activities in the H horizon were very high. The L horizon contained 4× more microbial biomass (based on PLFA) and 7× fungal biomass (based on ergosterol content) than the H horizon. The L horizon also contained relatively more fungi-specific and less actinomycete-specific PLFA. There were no significant correlations between enzyme activities and total microbial biomass. In the L horizon cellulose and hemicellulose-degrading enzymes correlated with each other and also with 1,4-β-N-acetylglucosaminidase and acid phosphatase activities. Laccase, Mn-peroxidase and acid phosphatase activities correlated in the H horizon. The soil profile showed a gradient of pH, organic carbon and humic compound content, microbial biomass and enzyme activities, all decreasing with soil depth. Ligninolytic enzymes showed preferential localization in the upper part of the H horizon. Differences in enzyme activities were accompanied by differences in the microbial community composition where the relative amount of fungal biomass decreased and actinomycete biomass increased with soil depth. The results also showed that the vertical gradients occur at a small scale: the upper and lower parts of the H horizon only 1 cm apart were significantly different with respect to seven out of nine activities, microbial biomass content and community composition.     

Changes in soil microbial biomass and functional diversity with a nitrogen gradient in soil columns

Fertilization generates nutrient patches that may impact soil microbial activity. In this study, nitrogen patches were generated by adding ammonium sulfate or urea to soil columns (length 25 cm; internal diameter 7.2 cm). Changes in nitrogen transformation, soil microbial biomass, and microbial functional diversity with the nitrogen gradients were investigated to evaluate the response of microbial activity to chemical fertilizer nutrient patches. After applying of ammonium sulfate or urea, the added nitrogen migrated about 7 cm. Microbial biomass carbon (MBC) was lower in fertilized soil than in the control (CK) treatment at the same soil layers. MBC increased with soil depth while microbial biomass nitrogen (MBN) decreased. BIOLOG analysis indicated that the average well color development (AWCD) and functional diversity indices of the microbial communities were lower in the 1 cm and 2 cm soil layers after application of ammonium sulfate; the highest values were in the 3 cm soil layer. AWCD and Shannon indices from the 1 to 5 cm soil layers were higher than those from other soil layers under urea application. Both principal component analysis and carbon substrate utilization analysis showed significant separation of soil microbial communities among different soil layers under application of ammonium sulfate or urea. Microbial activity was substantially decreased when NH₄⁺-N concentration was higher than 528.5 mg kg⁻¹ (1–3 cm soil layer under ammonium sulfate application) or 536.8 mg kg⁻¹ (1 cm soil layer under urea application). These findings indicated that changes in soil microbial biomass and microbial functional diversity can occur with a nitrogen gradient. The extent of changes depends on the nitrogen concentration and the form of inorganic fertilizer.     

Experimental nitrogen deposition alters the quantity and quality of soil dissolved organic carbon in an alpine meadow on the Qinghai-Tibetan Plateau

Dissolved organic matter (DOM) plays a central role in driving biogeochemical processes in soils, but little information is available on the relation of soil DOM dynamics to microbial activity. The effects of NO₃⁻ and NH₄⁺ deposition in grasslands on the amount and composition of soil DOM also remain largely unclear. In this study, a multi-form, low-dose N addition experiment was conducted in an alpine meadow on the Qinghai–Tibetan Plateau in 2007. Three N fertilizers, NH₄Cl, (NH₄)₂SO₄ and KNO₃, were applied at four rates: 0, 10, 20 and 40 kg N ha⁻¹ yr⁻¹. Soil samples from surface (0–10 cm) and subsurface layers (10–20 cm) were collected in 2011. Excitation/emission matrix fluorescence spectroscopy (EEM) was used to assess the composition and stability of soil DOM. Community-level physiological profile (CLPP, basing on the BIOLOG Ecoplate technique) was measured to evaluate the relationship between soil DOC dynamics and microbial utilization of C resources. Nitrogen (N) dose rather than N form significantly increased soil DOC contents in surface layer by 23.5%–35.1%, whereas it significantly decreased soil DOC contents in subsurface layer by 10.4%–23.8%. Continuous five-year N addition significantly increased the labile components and decreased recalcitrant components of soil DOM in surface layer, while an opposite pattern was observed in subsurface layer; however, the humification indices (HIX) of soil DOM was unaltered by various N treatments. Furthermore, N addition changed the amount and biodegradability of soil DOM through stimulating microbial metabolic activity and preferentially utilizing organic acids. These results suggest that microbial metabolic processes dominate the dynamics of soil DOC, and increasing atmospheric N deposition could be adverse to the accumulation of soil organic carbon pool in the alpine meadow on the Qinghai-Tibetan Plateau.     

Influence of mouldboard plough and rotary harrow tillage on microbial biomass and nutrient stocks in two long-term experiments on loess derived Luvisols

The nutrient-specific effects of tillage on microbial activity (basal respiration), microbial biomass (C, N, P, S) indices and the fungal cell-membrane component ergosterol were examined in two long-term experiments on loess derived Luvisols. A mouldboard plough (30 cm tillage depth) treatment was compared with a rotary harrow (8 cm tillage depth) treatment over a period of approximately 40 years. The rotary harrow treatment led to a significant 8% increase in the mean stocks of soil organic C, 6% of total N and 4% of total P at 0–30 cm depth compared with the plough treatment, but had no main effect on the stocks of total S. The tillage effects were identical at both sites, but the differences between the sites of the two experiments were usually stronger than those between the two tillage treatments. The rotary harrow treatment led to a significant increase in the mean stocks of microbial biomass C (+18%), N (+25%), and P (+32%) and to a significant decrease in the stocks of ergosterol (−26%) at 0–30 cm depth, but had no main effect on the stocks of microbial biomass S or on the mean basal respiration rate. The mean microbial biomass C/N (6.4) and C/P (25) ratios were not affected by the tillage treatments. In contrast, the microbial biomass C/S ratio was significantly increased from 34 to 43 and the ergosterol-to-microbial biomass C ratio significantly decreased from 0.20% to 0.13% in the rotary harrow in comparison with the plough treatment. The microbial biomass C-to-soil organic C ratio varied around 2.1% in the plough treatment and declined from 2.6% at 0–10 cm depth to 2.0 at 20–30 cm depth in the rotary harrow treatment. The metabolic quotient qCO₂ revealed exactly the inverse relationships with depth and treatment to the microbial biomass C-to-soil organic C ratio. Rotary harrow management caused a reduction in the microbial turnover in combination with an improved microbial substrate use efficiency and a lower contribution of saprotrophic fungi to the soil microbial community. This contrasts the view reported elsewhere and points to the need for more information on tillage-induced shifts within the fungal community in arable soils.     

Biochar soil amendment increased bacterial but decreased fungal gene abundance with shifts in community structure in a slightly acid rice paddy from Southwest China

Biochar’s role on greenhouse gas emission and plant growth has been well addressed. However, there have been few studies on changes in soil microbial community and activities with biochar soil amendment (BSA) in croplands. In a field experiment, biochar was amended at rates of 0, 20 and 40 t ha⁻¹ (C0, C1 and C2, respectively) in May 2010 before rice transplantation in a rice paddy from Sichuan, China. Topsoil (0–15 cm) was collected from the rice paddy while rice harvest in late October 2011. Soil physico-chemical properties and microbial biomass carbon (MBC) and nitrogen (MBN) as well as selected soil enzyme activities were determined. Based on 16S rRNA and 18S rRNA gene, bacterial and fungal community structure and abundance were characterized using terminal-restriction fragment length polymorphism (T-RFLP) combined with clone library analysis, denaturing gradient gel electrophoresis (DGGE) and quantitative real-time PCR assay (qPCR). Contents of SOC and total N and soil pH were increased but bulk density decreased significantly. While no changes in MBC and MBN, gene copy numbers of bacterial 16S rRNA was shown significantly increased by 28% and 64% and that of fungal 18S rRNA significantly decreased by 35% and 46% under BSA at 20 and 40 t ha⁻¹ respectively over control. Moreover, there was a significant decrease by 70% in abundance of Methylophilaceae and of Hydrogenophilaceae with an increase by 45% in Anaerolineae abundance under BSA at 40 t ha⁻¹ over control. Whereas, using sequencing DGGE bands of fungal 18S rRNA gene, some bands affiliated with Ascomycota and Glomeromycota were shown inhibited by BSA at rate of 40 t ha⁻¹. Significant increases in activities of dehydrogenase, alkaline phosphatases while decreased β-glucosidase were also observed under BSA. The results here indicated a shift toward a bacterial dominated microbial community in the rice paddy with BSA.     

Soil organic matter pools and carbon-protection mechanisms in aggregate classes influenced by surface liming in a no-till system

The stabilisation of soil organic matter (SOM) is the result of the simultaneous action of three mechanisms: chemical stabilisation, biochemical stabilisation and physical protection. The objectives of this study were (i) to evaluate carbon-protection mechanisms in different SOM pools in soil aggregates and (ii) to identify the association of Ca^2 + with total organic carbon (TOC) under the influence of surface liming in a medium-textured Oxisol in a long-term experiment under no-till system (NTS) in southern Brazil (25° 10′ S, 50° 05′ W). The treatments consisted of application of zero or 6 tons ha^? 1 of dolomitic lime on the soil surface in 1993 and a reapplication of zero or 3 tons ha^? 1 of dolomitic lime in 2000 to plots with or without previous lime application. Soil samples collected at depths of 0–2.5, 2.5–5, 5–10 and 10–20 cm were separated into seven aggregate classes. In each of these classes, TOC, particulate organic carbon (POC) and mineral-associated organic carbon (MAOC) were analysed. The 8–19 mm sized aggregates from the 0–2.5 cm layer were assessed by energy-dispersive X-ray spectroscopy (EDS) for the elemental analysis of carbon (C) and calcium (Ca). The liming caused an accumulation of TOC in the aggregates, mainly at a depth of 0–2.5 cm. The aggregates from soils treated with lime had a higher mean weight diameter (MWD) that resulted in the accumulation of TOC, especially in the 8–19 mm aggregate class, that was linear and closely related with C input (R² = 0.99). The proportion of large aggregates in the treatments with lime was closely correlated with the TOC content of the whole sample. The largest dose of lime (9 tons ha^? 1) resulted in higher TOC, POC and MAOC values, mainly in the 8–19 mm aggregate class. The elemental analyses for C and Ca revealed similar spectra between them for the surface-liming treatments in the clay fraction found in the centres of the 8–19 mm aggregates. The surface application of lime to NT fields provided greater stability and protection of the intra-aggregate C, presumably due to Ca^2 + acting as a cationic bridge between OC and the kaolinite in the clay fraction.     

The role of biological activity (roots,earthworms) in medium-term C dynamics in vertisol under a Digitaria decumbens (Gramineae) pasture

The natural abundance of ¹³C was used to estimate the turnover of the soil organic matter in a vertisol re-grassed with Digitaria decumbens (C4 plant) following intensive market gardening (C3 plants). In addition, the experimental design allowed us to determine the respective roles of roots and earthworms (Polypheretima elongata) in soil C stock restoration in D. decumbens pasture.The C stock increased from 31 to 37 Mg C ha⁻¹ in 5 years and the δ¹³C increased from −18.1‰ in market gardening soil to −15.5‰ in the 5-year-old pasture soil in the upper 20 cm. Below the 20 cm soil layer, the C stock and the δ¹³C did not change significantly in 5 years. The net gain of 6 Mg C ha⁻¹ was the balance of a loss of 5 Mg C ha⁻¹ derived from market gardening and a gain of 11 Mg C ha⁻¹ derived from D. decumbens. Effects of earthworms on the C dynamics were not discernible.