长期施肥黑土微生物区系及功能多样性的变化

Black soil （Mollisol） is one of the main soil types in northeastern China. Biolog and polymerase chain reactiondenaturing gradient gel electrophoresis （PCR-DGGE） methods were used to examine the influence of various fertilizer combinations on the structure and function of the bacterial community in a black soil collected from Harbin, Heilongjiang Province. Biolog results showed that substrate richness and catabolic diversity of the soil bacterial community were the greatest in the chemical fertilizer and chemical fertilizer＋manure treatments. The metabolic ability of the bacterial community in the manure treatment was similar to the control. DGGE fingerprinting indicated similarity in the distribution of most 16S rDNA bands among all treatments, suggesting that microorganisms with those bands were stable and not influenced by fertilization. However, chemical fertilizer increased the diversity of soil bacterial community. Principal com- ponent analysis of Biolog and DGGE data revealed that the structure and function of the bacterial community were similar in the control and manure treatments, suggesting that the application of manure increased the soil microbial population, but had no effect on the bacterial community structure. Catabolic function was similar in the chemical fertilizer and chemical fertilizer＋manure treatments, but the composition structure of the soil microbes differed between them. The use of chemical fertilizers could result in a decline in the catabolic activity of fast-growing or eutrophic bacteria.     

养分与田间管理对杂交稻种植体系中土壤微生物群落底物利用模式的联合效应

A field experiment was conducted to study the combined effect of nutrient and pest managements on soil biomass phospholipid contents,functional biodiversity and substrate utilization patterns of soil microbial populations in hybrid rice cropping system. The mineral N,P and K fertilizers (as urea,calcium superphosphate and KCl respectively) were incorporated at 100,25,and 100 kg ha^-1,respectively, and the various pesticides were applied at the recommented rates. The results of the experiment demonstrated a decline in the microbial abundance and soil microbial biomass phospholipid contents with the advancement of crop growth, and significant changes in substrate utilization pattern of soil microbial population studied were observed with different management practices and at different growth stages. The principal component analysis (PCA) using all 95-carbon sources (BIOLOG plates) gave good differentiation among the treatments, indicating that they have different patterns of carbon utilization under different habitats. The data showed that diversity in microbial community continuously changed with the progression in crop stage,particularly at physiological maturity (PM) stage that was evident from the utilization of different carbon sources at various crop stages.     

蘑菇生长过程中覆土内微生物群落结构的变化特征

The culturable bacterial population and phospholipid fatty acid (PLFA) profile of casing soil were investigated at different mushroom (Agaricus bisporus) cropping stages. The change in soil bacterial PLFAs was always accompanied by a change in the soil culturable bacterial population in the first flush. Comparatively higher culturable bacterial population and bacterial PLFAs were found in the casing soil at the primordia formation stage of the first flush. There was a significant increase in the ratio of fungal to bacterial PLFAs during mushroom growth. Multivariate analysis of PLFA data demonstrated that the mushroom cropping stage could considerably affect the microbial community structure of the casing soil. The bacterial population increased significantly from casing soil application to the primordia formation stage of the first flush. Casing soil application resulted in an increase in the ratio of gram-negative bacterial PLFAs to gram-positive bacterial PLFAs, suggesting that some gram-negative bacteria might play an important role in mushroom sporophore initiation.     

土壤微生物群落结构与多样性对农田集约化管理程度降低的响应

Using a scheme of agricultural fields with progressively less intensive management （deintensification）, different management practices in six agroecosystems located near Goldsboro, NC, USA were tested in a large-scale experiment, including two cash-grain cropping systems employing either tillage （CT） or no-tillage （NT）, an organic farming system （OR）, an integrated cropping system with animals （IN）, a successional field （SU）, and a plantation woodlot （WO）. Microbial phospholipid fatty acid （PLFA） profiles and substrate utilization patterns （BIOLOG ECO plates） were measured to examine the effects of deintensification on the structure and diversity of soil microbial communities. Principle component analyses of PLFA and BIOLOG data showed that the microbial community structure diverged among the soils of the six systems.Lower microbial diversity was found in lowly managed ecosystem than that in intensive and moderately managed agroecosystems, and both fungal contribution to the total identified PLFAs and the ratio of microbial biomass C/N increased along with agricultural deintensification. Significantly higher ratios of C/N （P 〈 0.05） were found in the WO and SU systems, and for fungal/bacterial PLFAs in the WO system （P 〈 0.05）. There were also significant decreases （P 〈 0.05） along with agricultural deintensification for contributions of total bacterial and gram positive （G＋） bacterial PLFAs.Agricultural deintensification could facilitate the development of microbial communities that favor soil fungi over bacteria.     

植物促生菌接种对中国芥蓝根际固有微生物群落结构的影响

Plant growth-promoting rhizobacteria (PGPR) have been widely recognized as an important agent,especially as a biofertilizer,in agricultural systems.The objectives of this study were to select efective PGPR for Chinese kale (Brassica oleracea var.alboglabra) cultivation and to investigate the efect of their inoculation on indigenous microbial community structure.The Bacillus sp.SUT1 and Pseudomonas sp.SUT19 were selected for determining the efficiency in promoting Chinese kale growth in both pot and field experiments.In the field experiment,PGPR amended with compost gave the highest yields among all treatments.The Chinese kale growth promotion may be directly afected by PGPR inoculation.The changes of microbial community structure in the rhizosphere of Chinese kale following PGPR inoculation were examined by denaturing gradient gel electrophoresis (DGGE) and principal coordinate analysis.The DGGE fingerprints of 16S rDNA amplified from total community DNA in the rhizosphere confirmed that our isolates were established in the rhizosphere throughout this study.The microbial community structures were slightly diferent among all the treatments,and the major changes depended on stages of plant growth.DNA sequencing of excised DGGE bands showed that the dominant species in microbial community structure in the rhizosphere were not mainly interfered by PGPR,but strongly influenced by plant development.The microbial diversity as revealed by diversity indices was not diferent between the PGPR-inoculated and uninoculated treatments.In addition,the rhizosphere soil had more influence on eubacterial diversity,whereas it did not afect archaebacterial and fungal diversities.     

中国北方温带草原土壤微生物对气温变暖与添加氮素的响应特征

The responses of soil microbes to global warming and nitrogen enrichment can profoundly affect terrestrial ecosystem functions and the ecosystem feedbacks to climate change. However, the interactive effect of warming and nitrogen enrichment on soil microbial community is unclear. In this study, individual and interactive effects of experimental warming and nitrogen addition on the soil microbial community were investigated in a long-term field experiment in a temperate steppe of northern China. The field experiment started in 2006 and soils were sampled in 2010 and analyzed for phospholipid fatty acids to characterize the soil microbial communities. Some soil chemical properties were also determined. Five-year experimental warming significantly increased soil total microbial biomass and the proportion of Gram-negative bacteria in the soils. Long-term nitrogen addition decreased soil microbial biomass at the 0-10 cm soil depth and the relative abundance of arbuscular mycorrhizal fungi in the soils. Little interactive effect on soil microbes was detected when experimental warming and nitrogen addition were combined. Soil microbial biomass positively correlated with soil total C and N, but basically did not relate to the soil C/N ratio and pH. Our results suggest that future global warming or nitrogen enrichment may significantly change the soil microbial communities in the temperate steppes in northern China.     

Effects of Irrigation Patterns and Nitrogen Fertilization on Rice Yield and Microbial Community Structure in Paddy Soil

Water and nitrogen (N) are considered the most important factors affecting rice production and play vital roles in regulating soil microbial biomass, activity, and community. The effects of irrigation patterns and N fertilizer levels on the soil microbial community structure and yield of paddy rice were investigated in a pot experiment. The experiment was designed with four N levels of 0 (N0), 126 (N1), 157.5 (N2), and 210 kg N ha-1 (N3) under two irrigation patterns of continuous water-logging irrigation (WLI) and water-controlled irrigation (WCI). Phospholipid fatty acid (PLFA) analysis was conducted to track the dynamics of soil microbial communities at tillering, grain-filling, and maturity stages. The results showed that the maximums of grain yield, above-ground biomass, and total N uptake were all obtained in the N2 treatment under WCI. Similar variations in total PLFAs, as well as bacterial and fungal PLFAs, were found, with an increase from the tillering to the grain-filling stage and a decrease at the maturity stage except for actinomycetic PLFAs, which decreased continuously from the tillering to the maturity stage. A shift in composition of the microbial community at different stages of the plant growth was indicated by principal component analysis (PCA), in which the samples at the vegetative stage (tillering stage) were separated from those at the reproductive stage (grain-filling and maturity stages). Soil microbial biomass, measured as total PLFAs, was significantly higher under WCI than that under WLI mainly at the grain-filling stage, whereas the fungal PLFAs detected under WCI were significantly higher than those under WLI at the tillering, grain-filling, and maturity stages. The application of N fertilizer also significantly increased soil microbial biomass and the main microbial groups both under WLI and WCI conditions. The proper combination of irrigation management and N fertilizer level in this study was the N2 (157.5 kg N ha-1) treatment under the water-controlled irrigation pattern.     

不同肥力水平和利用历史的红壤磷脂脂肪酸图谱

Analysis of phospholipid fatty acids(PLFAs) was used to estimate the microbial community structures of eight Chinese red soils with different fertility levels and land use histories.The total amounts of PLFAs in the soils were significantly correltaed with soil organic carbon, total nitrogen,microbial biomass C and basal respiration,indicating that total PLFA was closely related to fertility and sustainbility in these highly weathered soils.Soils of the eroded wastelan were rich in Gram-positive species .When the eroded soils were planted with citrus trees,the soil microbial population had changed little in 4 years but took up to 8-12 yearss before it reached a significantly different population,Multivariate analysis of PLFAs demonstrated that land use history and plant cover type had a significant impact on microbial community structure.Howver,the difference of soil microbial community structure in the paddy field compared to other land uses was not larger than expected in this experiment.     

稻田系统管理措施对微生物生物量C、N、P的长期影响

A 12-year field experiment was conducted to investigate the effect of different tillage methods and fertil-ization systems on microbial biomass C,N and P of a gray fluvo-aguic soil in rice-based cropping system .Five fertilization treatments were designed under conventional tillae(CT) or on tillage(NT) system:no fertilizer(CK) ; chemical fertilizer only(CF) ; combining chemical fertilizer with pig manure(PM); combining chemical fertilizer with crop straw (CS) and fallow (F). The results showed that biomass C,N and P were enriched in the surface layer of no-tilled soil,whereas they distributed relatively evenly in the tilled soil,which might result from enrichment of crop resdue,organic manure and mineral fertilzer,and surficial developent of root systems under NT.Under the cultivation system NT had slightly greater biomass C,N and P at 0-5 cm depth ,significantly less biomass C,N and P at 5-15 cm depth ,less microbial biomass C,N and equivalent biomass P at 15-30 cm depth as compared to CT,indicating hat tillage was beneficial for the multiplication of organims in the plowed layer of soil.Under the fallow system,biomass C,N and P in the surface layer were significantly greater for NT than CT while their differences between the two tillage methods were neligible in the deeper layers.In the surface layer,biomass C,N and P in the soils amended with oranic manure combined with mineral fertilizers were significantly greater than those of the treatments only with mineral fertilizers and the control.Soils without fertilzer had the least biomass nutrient contents among the five fertilization treatments.Obviously,the long-term application of organic manure could maintain the higher activity of microorganisms in soils.The amounts of biomass C,N and P in the fallowed soils varied with the tillage methods;they were much greater under NT than under CT,especially in the surface layer,suggesting that the frequent plowing could decrease the content of organic matter in the surface layer of the fallowed soil.     

退化喀斯特植被恢复与土壤微生物特征的关系

The mechanism of vegetation restoration on degraded karst regions has been a research focus of soil science and ecology for the last decade.In an attempt to preferably interpret the soil microbiological characteristic variation associated with vegetation restoration and further to explore the role of soil microbiology in vegetation restoration mechanism of degraded karst regions,we measured microbial biomass C and basal respiration in soils during vegetation restoration in Zhenfeng County of southwestern Guizhou Province,China.The community level physiological profiles(CLPP) of the soil microbial community to were estimated determine if vegetation changes were accompanied by changes in functioning of soil microbial communities.The results showed that soil microbial biomass C and microbial quotient(microbial biomass C/organic C) tended to increase with vegetation restoration,being in the order arboreal community stage > shrubby community stage > herbaceous community stage > bare land stage.Similar trend was found in the change of basal respiration(BR).The metabolic quotient(the ratio of basal respiration to microbial biomass,qCO 2) decreased with vegetation restoration,and remained at a constantly low level in the arboreal community stage.Analyses of the CLPP data indicated that vegetation restoration tended to result in higher average well color development,substrate richness,and functional diversity.Average utilization of specific substrate guilds was highest in the arboreal community stage.Principle component analysis of the CLPP data further indicated that the arboreal community stage was distinctly different from the other three stages.In conclusion,vegetation restoration improved soil microbial biomass C,respiration,and utilization of carbon sources,and decreased qCO 2,thus creating better soil conditions,which in turn could promote the restoration of vegetation on degraded karst regions.     

三种不同种植模式对土壤细菌群落多样性的影响

采用变性梯度凝胶电泳(DGGE )技术,研究了不同种植模式对土壤细菌群落多样性的影响。结果表明,不同种植模式下DGGE图谱条带的数量及亮度有较大区别,且有几条特征性条带发生了明显的变化。0—15 cm土层细菌群落的丰富度、多样性指数及均匀度指数均表现为:“菜稻菜模式”（RVCs） “休闲轮作模式”（FRCs） “蔬菜连作模式”（VCCs）;15—30 cm土层细菌群落的丰富度、多样性指数及均匀度指数均表现为:FRCs RVCs VCCs。UPGMC聚类分析表明,RVCs 处理的细菌群落结构相似性较低。主成分分析表明,对各主成分起分异作用的主要是 RVCs和FRCs;与主成分因子1 正相关程度较高的种植模式为:RVCs和VCCs,与主成分因子2 正相关程度较高的是 FRCs。可见,水稻土细菌群落多样性与种植模式密切相关,这些变化对土壤细菌群落有重要的调节作用。     

不同栽培环境下有机与常规蔬菜土壤的细菌群落多样性差异

土壤细菌群落在蔬菜栽培中发挥着重要作用。基于DNA和RNA水平,利用PCR-DGGE技术研究了不同栽培环境下有机与常规蔬菜土壤细菌群落多样性差异,以及土壤理化性质与细菌群落多样性的关系。结果表明：不同栽培方式下土壤细菌多样性存在明显差异,土壤微生物的优势种群和数量受有机、常规栽培和季节影响,有机栽培较之常规栽培能够显著增加土壤细菌群落多样性;聚类分析表明,16S rDNA细菌群落多样性与季节相关,而16S rRNA细菌群落多样性与栽培方式相关;差异条带测序显示,大多细菌与不可培养细菌种属有较高同源性,其余9种推测属于假单胞菌属;CCA分析说明pH是影响土壤细菌群落多样性的主要因素,有机栽培土壤中微生物生物量C、N以及有机质含量显著高于常规栽培土壤。综上,有机栽培能够丰富活性细菌群落多样性,具有土壤优化效应。     

不同种植模式背景下栽植生姜对紫色土细菌多样性的影响

为了解栽植生姜对岷江下游紫色丘陵区不同种植模式背景下典型紫色土微生物多样性的影响,采用PCR-DGGE与DNA序列分析方法,研究了紫色丘陵区玉米+红薯间作、大豆单作、生姜连作、水稻-紫云英轮作等4种典型种植模式背景下栽植生姜前后土壤细菌多样性变化特征。PCR-DGGE分子指纹图谱结果表明,同一种植模式下栽种生姜前后DGGE条带数目、位置和亮度差异明显。栽种生姜均降低了各模式下土壤细菌群落丰富度和Shannon-Wiener指数,明显改变了土壤细菌群落结构,其中生姜连作模式背景下土壤细菌丰富度和Shannon-Wiener指数下降幅度最大,玉米+红薯间作模式下降幅度最小,但栽植生姜后4种种植模式之间土壤细菌群落结构相似度明显增加。DGGE特征条带的序列分析表明,栽植生姜后,土壤细菌中的部分绿弯菌门类群消失,部分硝化螺旋菌门类群仅在水稻-紫云英轮作模式中发现、玉米+红薯间作模式中出现了短波单胞菌门的细菌。这些结果为了解栽植生姜对土壤环境的影响以及生姜种植模式的优化提供了一定的科学依据。     

不同栽培模式对黄瓜根际土壤酶活性及细菌群落结构的影响

分别以小麦、燕麦、毛葱、芹菜、白菜与黄瓜伴生或套作,研究了不同栽培模式对黄瓜根际土壤酶活性及细菌群落结构的影响,为连作土壤环境修复提供理论依据。结果表明:小麦/黄瓜、燕麦/黄瓜伴生,毛葱/黄瓜套作显著提高了根际土壤过氧化氢酶活性（P0.05）;芹菜/黄瓜套作和小麦/黄瓜伴生显著提高了根际土壤过氧化物酶活性（P0.05）;芹菜/黄瓜套作显著提高了根际土壤脲酶活性（P0.05）;不同栽培模式均显著提高了各时期根际土壤转化酶活性（P0.05）。PCR-DGGE分析结果显示,不同栽培模式在一定程度上提高了黄瓜根际土壤细菌群落结构多样性。DGGE条带测序显示,黄瓜根际土壤细菌大多与不可培养的细菌种属具有较高的同源性,测序比对推测,主要分属于-变形菌纲（Alphaproteobacteria）、-变形菌纲（Betaproteobacteria）、鞘脂杆菌纲（Sphingobacteria）和芽单胞菌纲（Gemmatimonadetes）四个纲。本研究说明不同栽培模式对土壤酶活性和土壤细菌群落结构均产生一定影响,改变了土壤环境,其中小麦与黄瓜伴生栽培模式效果较好。     

Soil microbial community composition as affected by restoration practices in California grassland

Agricultural practices have strong impacts on soil microbes including both the indices related to biomass and activity as well as those related to community composition. In a grassland restoration project in California, where native perennial bunchgrasses were introduced into non-native annual grassland after a period of intensive tillage, weeding, and herbicide use to reduce the annual seed bank, microbial community composition was investigated. Three treatments were compared: annual grassland, bare soil fallow, and restored perennial grassland. Soil profiles down to 80 cm in depth were investigated in four separate layers (0-15, 15-30, 30-60, and 60-80 cm) using both phospholipid ester-linked fatty acid (PLFAs) and ergosterol as biomarkers in addition to microbial biomass C by fumigation extraction. PLFA fingerprinting showed much stronger differences between the tilled bare fallow treatment vs. grasslands, compared to fewer differences between restored perennial grassland and annual grassland. The presence or absence of plants over several years clearly distinguished microbial communities. Microbial communities in lower soil layers were little affected by management practices. Regardless of treatment, soil depth caused a strong gradient of changing habitat conditions, which was reflected in Canonical Correspondence Analysis of PLFAs. Fungal organisms were associated with the presence of plants and/or litter since the total amount and the relative proportion of fungal markers were reduced in the tilled bare fallow and in lower layers of the grassland treatments. Total PLFA and soil microbial biomass were highly correlated, and fungal PLFA biomarkers showed strong correlations to ergosterol content. In conclusion, microbial communities are resilient to the grassland restoration process, but do not reflect the change in plant species composition that occurred after planting native bunchgrasses.     

黄瓜连作土壤微生物区系变化研究

研究了黄瓜根部土壤主要微生物类群随连作茬次的反应,并着重用变性梯度凝胶电泳(DGGE)监测黄瓜根际未培养优势菌群的动态变化。结果表明:随着连作茬次增加,土壤可培养微生物数量减少,其中细菌数量降低更为明显,对连作表现出较高的敏感性,放线菌对黄瓜连作反应稍滞后,至第三茬时开始呈现降低趋势。黄瓜连作致使少数真菌种群富集,同时多种真菌类群数量减少,种群变化呈现单一化趋势,多样性水平降低。DGGE分析结果表明黄瓜连作引起根际Bacillus sp.、Pseudom onas sp.和另一未培养细菌种群数量减少,而同时引起Sphingom onas sp.类群数量增加。实验结果暗示,黄瓜连作破坏根部微生物种群生态平衡,使其多样性水平降低。     

Effects of fallow or planting wheat (Triticum aestivum L.) and fertilizing P or fertilizing P and N practices on soil carbon and nitrogen in a low-organic-matter soil

Soil carbon (C) and nitrogen (N) are important for maintaining soil fertility, and they are considerably affected by soil use and management. In the present study, we conducted an 8-year ?eld experiment on loessial dryland soil (Eum-Orthic Anthrosol, Food and Agriculture Organization of the United Nations (FAO)) in the southern Loess Plateau, China. We tested four soil management regimes—i.e., winter wheat (Triticum aestivum L.) cultivation with phosphorus (P) fertilization (WP), winter wheat cultivation with N and P fertilization (WNP), natural fallow (NF) and bare fallow (BF)—to evaluate their effects on soil C and N fractions. After 8 years, compared with the WNP treatment, the total soil organic nitrogen (SON) in the WP treatment decreased by 14.6% and 36.8%, and microbial biomass nitrogen (MBN) by 35.6% and 61.1%, at 0–20 and 20–40 cm soil depths, respectively. The soil heavy fraction nitrogen (HFN) and light fraction nitrogen (LFN) in the WP treatment also decreased by 36.6% and 39.4%, respectively. Furthermore, BF treatment decreased total soil organic carbon (SOC), heavy fraction carbon (HFC), LFN and MBN at both soil depths with average reductions of 43.4%. The NF treatment decreased light fraction carbon (LFC) by 17.0% at 0–20 cm soil depth, as well as MBN by 24.8% and 71.2%, and inorganic C by 29.1% and 23.8%, at 0–20 and 20–40 cm soil depths, respectively. There was no significant difference of microbial biomass C concentration among the WP, NF and BF treatments. These results confirmed that a lack of N fertilization decreased SON, BF reduced both SOC and SON, and NF decreased soil inorganic C. Therefore, the managements of a recommended rate of N fertilizer application and shortened time of bare fallow are critical for maintaining or increasing SON fraction sequestration, and natural fallow management is not a useful method for maintaining soil fertility in dryland in the Loess Plateau in China.

Abbreviations: HFC: heavy fraction carbon; HFN: heavy fraction nitrogen; LFC: light fraction carbon; LFN: light fraction nitrogen; MBC: microbial biomass carbon; MBN: microbial biomass nitrogen; SOC: soil organic carbon; SON: soil organic nitrogen     

Soil microbial biomass,crop yields,and bacterial community structure as affected by long-term fertilizer treatments under wheat-rice cropping

Soil microbial biomass carbon (SMBC) and nitrogen (SMBN), soil microbial community structure, and crop yields were studied in a long-term (1982–2004) fertilization experiment carried out in Suining, Sichuan province of PR China. Eight treatments included three chemical fertilizer (CF) treatments (N, NP, NPK), three CF + farmyard manure (M) treatments (NM, NPM, NPKM), M alone and no fertilizer (CK) as control. The results showed that the soil microbial biomass was higher in soil treated with CFM than in soil treated with CF alone, and that NPKM gave the highest rice and wheat yields. The SMBC and SMBN were higher after rice than those after wheat cropping. SMBC correlated closely with soil organic matter. Average yields of wheat and rice for 22 years were higher and more stable in the fertilized plots than in control plots. Bacterial community structure was analyzed by PCR-DGGE targeting eubacterial 16S rRNA genes. A higher diversity of the soil bacterial community was found in soil amended with CFM than in other fertilizer treatments. Some specific band emerged in the soil amended with M. The highest diversity of bacterial communities was found in the NPKM treated soil. The bacterial community structures differed in rice and wheat plots. Sequencing of PCR products separated in DGGE showed that some of the common and dominant bands were closely related to Aquicella lusitana and to Acidobacteria. This study demonstrated that mixed application of N, P, and K with additional M amendment increased soil microbial biomass, diversified the bacterial communities and maintained the crop production in the Calcareous Purplish Paddy soil.     

Effect of organic mulches on soil bacterial communities one year after application

The application of organic mulches as a soil cover is effective in improving the quality of soil. However, very little information is available on the effect of mulches on the soil microbial community. In this study, we investigated the effect of various organic mulches on soil dehydrogenase activity (DHA) and microbial community structures in the top 1 cm and 5 cm below the soil surface 1 year after application of the mulches. DHA was stimulated at both depths in plots mulched with grass clippings (GC), but was not significantly different from the control for the other mulch treatments. Fatty acid methyl ester (FAME) analysis and denaturing gradient gel electrophoresis (DGGE) of polymerase chain reaction-amplified 16S rDNA fragments were used to assess changes in the soil microbial community structure. Cluster analysis and principle component analysis of FAME profiles showed that only soil mulched with pine chips distinctively clustered from the other treatments. At the soil surface, bacterial DGGE profiles revealed that distinct shifts in several bacterial populations occurred in soils mulched with GC and eucalyptus yardwaste (EY), while DGGE profiles from soil at the 5 cm depth revealed no distinct changes. Changes in bacterial diversity at the soil surface under different mulches were calculated based on the number of bands in the DGGE profile using the Shannon-Weaver index of diversity ( H). Compared to the control ( H =0.9), the GC- and EY-treated soils showed slightly increased bacterial diversity, with an H of 1.1 and 1.0, respectively. These results indicate that the long-term effect of organic mulches on the soil microbial activity and community structure is highly dependent upon the type of mulch and is mostly exerted in the top few centimeters of the soil profile.     

Microbial biomass in agricultural topsoils after 6 years of bare fallow

Inherent soil properties have an influence on microbial activity. These effects were measured in a field trial at Weihenstephan with 30 agricultural and 2 vineyard soils from different sites in Bavaria which had been kept under bare fallow for 6 years. The soils represented a wide range of arable soils from a temperate climate. Unaffected by recent differences in climatic conditions or cropping managements, they were used to assess the relationship between microbial biomass C and a broad spectrum of soil physical and chemical properties (clay content 5–63%, pH 4.5–7.5, organic C 0.55–2.93%). Microbial C was measured using the substrate-induced respiration method. In addition, soil catalase activity and the abundance and biomass of earthworms were determined. Among the soil properties, microbial C was most strongly correlated with organic C (r=0.86, n=29). In a comparison of linear regressions between microbial biomass C and organic C for different cropping managements, the slope under bare fallow was lowest, followed by monoculture and crop rotation. The microbial: organic C ratio ranged from 1.1 to 4.3% and was significantly correlated with soil pH (r=0.66). A positive relationship between microbial C and the clay content (r=0.66) was significantly improved when soils with more than 25% clay were excluded (r=0.80). Partial correlation analysis indicated that clay had a direct influence, hardly affected by an intercorrelation with organic C. Catalase activity was highly correlated with microbial C (r=0.95) and, because a rapid and sensitive method of determination is available, was considered suitable for estimating relative amounts of active microbial biomass. A positive relationship between microbial C and the abundance of earthworms indicated interactions between microorganisms and mesofauna.