Fate of microbial residues in sandy soils of the South African Highveld as influenced by prolonged arable cropping

Long‐term cultivation of former grassland soils results in a significant decline of both living and dead microbial biomass. We evaluated the effect of duration of cropping on the preservation of fungal and bacterial residues in the coarse‐textured soils of the South African Highveld. Composite samples were taken from the top 20 cm of soils (Plinthustalfs) that have been cropped for periods varying from 0 to 98 years in each of three different agro‐ecosystems in the Free State Province. Amino sugars were determined as markers for the microbial residues in bulk soil and its particle‐size fractions. Long‐term cultivation reduced N in the soil by 55% and the contents of amino sugars by 60%. Loss rates of amino sugars followed bi‐exponential functions, suggesting that they comprised both labile and stable fractions. With increased duration of cropping the amino sugars attached to silt dissipated faster than those associated with the clay. This dissipation was in part because silt was preferentially lost through erosion, while clay particles (and their associated microbial residues) remained. Erosion was not solely responsible for the reduction in amino sugar concentrations, however. Bacterial amino sugars were lost in preference to fungal ones as a result of cultivation, and this effect was evident in both silt‐ and clay‐sized separates. This shift from fungal to bacterial residues was most pronounced within the first 20 years after converting the native grassland to arable cropland, but continued after 98 years of cultivation.     

Long-term changes in land use impact the accumulation of microbial residues in the particle-size fractions of a Mollisol

To test the impact of a range of long-term land use types on the partitioning of microbial residues among soil particles, samples from a Mollisol with plots under 100 years of continuous arable cropping, 30 years of simulated overgrazing to severely degraded bare soil, or 30 years of grassland restoration were investigated. The microbial residues, which were assessed among three particle-size fractions (<2, 2–20, and 20–250 μm) by amino sugar extraction, exhibited change with particle size and land use. Converting arable cropping to bare soil induced substantial depletion of amino sugars associated with the clay-size fraction, as a proportion of total carbon (C) and total soil mass, but not the silt- and sand-size fractions. Alternatively, switching arable soil to grassland increased amino sugar stocks in both the clay- and sand-size fractions. Analysis of the relative input of fungal and bacterial derived amino sugars indicated that fungal sources are the most dynamic with respect to land use change. These results highlight the selective vulnerability of microbial C pools in finer fractions under low plant C input and the selective recovery in specific fractions upon restoration, emphasizing the importance of the conversion of plant organic matter into mineral-associated microbial residues to promote stable soil organic C.     

Nitrogen biomarkers and their fate in soil

More than 90 % of the nitrogen (N) in soils can be organically bound, but the mechanisms and rates by which it is cycled have eluded researchers. The objective of this research was to contribute to a better understanding of the origin and transformation of soil organic N (SON) by using amino sugars and the enantiomers of amino acids as markers for microbial residues and/or aging processes. Studied samples presented here comprised (1) soil transects across different climates, (2) arable soils with different duration of cropping, and (3) radiocarbon‐dated soil profiles. The results suggested that increased microbial alteration of SON temporarily results in a sequestration of N in microbial residues, which are mineralized at later stages of SON decomposition. Microorganisms increasingly sequestered N within intact cell wall residues as frost periods shortened. At a mean annual temperature above 12–15 °C, these residues were mineralized, probably due to limitations in additional substrates. Breaking the grassland for cropping caused rapid SON losses. Microbial residues were decomposed in preference to total N, this effect being enhanced at higher temperatures. Hence, climate and cultivation interactively affected SON dynamics. Nevertheless, not all SON was available to soil microorganisms. In soil profiles, L‐aspartic acid and L‐lysine slowly converted into their D‐form, for lysine even at a similar rate in soils of different microbial activity. Formation of D‐aspartate with time was, therefore, induced by microorganisms while that of D‐lysine was not. The racemization of the two amino acids indicates that SON not available to microorganisms ages biotically and abiotically. In native soils, the latter is conserved for centuries, despite N deficiency frequently occurring in living terrestrial environments. Climate was not found to affect the fate of old protein constituents in surface soil. When native grassland was broken for cropping, however, old SON constituents had become available to microorganisms and were degraded.     

Dynamics of soil amino sugar pools during decomposition processes of corn residues as affected by inorganic N addition

Purpose  

Identifying the impact of inorganic-nitrogen (N) availability on soil amino sugar dynamics during corn (Zea mays L.) residue decomposition may advance our knowledge of microbial carbon (C) and N transformations and the factors controlling these processes in soils. Amino sugars are routinely used as microbial biomarkers to investigate C and N sequestration in microbial residues, and they are also involved in microbial-mediated soil organic matter (SOM) turnover. We conducted a 38-week incubation study using a Mollisol which was amended with corn residues and four levels of inorganic N (i.e., 0, 60.3, 167.2, and 701.9 mg N kg⁻¹ soil). The objective of this study was to examine the effects of inorganic-N availability on fungal and bacterial formation and stabilization of heterogeneous amino sugars during the corn residue decomposition in soil.     

Land-use effects on amino sugars in particle size fractions of an Argiudoll

Identifying amino sugar pools from different land-use systems may advance our knowledge of land-use effects on the fate of microbially-derived substances. Surface soils (0–10 cm) from (1) native pasture, (2) a >80-years-arable site, and (3) a >80-years-afforested site were fractionated into clay, silt, fine-, and coarse-sand fractions. Then, soil organic carbon, N, glucosamine, galactosamine, mannosamine, and muramic acid were analyzed.Afforestation did not influence the amino sugar content in bulk soil, whereas cultivation reduced the content by 54%. The concentrations of amino sugars in g kg⁻¹ SOM declined after both long-term cropping and afforestation by 6% and 13%, respectively, relative to that in the grassland. The amino sugar depletion at the forest site occurred mainly from the silt fraction (by 25%), while that in the cultivated site was mainly due to preferential loss of amino sugars from clay (by 19% compared with the grassland). Both ratios of glucosamine to galactosamine and glucosamine to muramic acid increased when the prairie was converted to forest or cultivated land, suggesting that bacterial N especially is better preserved than fungal N under prairie conditions.     

稻田土壤微生物残体积累对外源秸秆输入的响应研究进展

稻田土壤碳循环是我国陆地生态系统碳循环的重要组成部分。促进稻田生态系统碳的固定及稳定对减缓全球气候变化起着不容忽视的作用。微生物主导的有机碳转化过程是土壤碳循环研究的核心,微生物同化代谢介导的细胞残体迭代积累在土壤有机碳长期截获和稳定过程中发挥重要作用。与旱地土壤相比,关于稻田土壤中微生物残体积累动态对外源有机物质如作物秸秆输入的响应及主要影响因子的认识还相对有限,对微生物通过同化作用参与土壤固碳的过程和机制尚缺乏系统认识。基于此,本文介绍了微生物残体对土壤有机碳库形成和积累的重要性及评价指标,重点探讨了秸秆还田对稻田土壤微生物残体积累动态以及外源秸秆碳形成细胞残体转化过程的影响,分析了影响微生物残体积累转化的主要气候因素和土壤因素,最后提出了未来应借助先进的光谱和高分辨率成像技术并结合同位素示踪对微生物残体的稳定性与机理开展更为深入的研究。     

Amino sugars and muramic acid—biomarkers for soil microbial community structure analysis

Characterizing functional and phylogenetic microbial community structure in soil is important for understanding the fate of microbially-derived compounds during the decomposition and turn-over of soil organic matter. This study was conducted to test whether amino sugars and muramic acid are suitable biomarkers to trace bacterial, fungal, and actinomycetal residues in soil. For this aim, we investigated the pattern, amounts, and dynamics of three amino sugars (glucosamine, mannosamine and galactosamine) and muramic acid in the total microbial biomass and selectively cultivated bacteria, fungi, and actinomycetes of five different soils amended with and without glucose. Our results revealed that total amino sugar and muramic acid concentrations in microbial biomass, extracted from soil after chloroform fumigation varied between 1 and 27 mg kg⁻¹ soil. In all soils investigated, glucose addition resulted in a 50-360% increase of these values. In reference to soil microbial biomass-C, the total amino sugar- and muramic acid-C concentrations ranged from 1-71 g C kg⁻¹ biomass-C. After an initial lag phase, the cultivated microbes revealed similar amino sugar concentrations of about 35, 27 and 17 g glucosamine-C kg⁻¹ TOC in bacteria, fungi, and actinomycetes, respectively. Mannosamine and galactosamine concentrations were lower than those for glucosamine. Mannosamine was not found in actinomycete cultures. The highest muramic acid concentrations were found in bacteria, but small amounts were also found in actinomycete cultures. The concentrations of the three amino sugars studied and muramic acid differed significantly between bacteria and the other phylogenetic microbial groups under investigation (fungi and actinomycetes). Comparison between the amino sugar and muramic acid concentrations in soil microbial biomass, extracted after chloroform fumigation, and total concentrations in the soil showed that living microbial biomass contributed negligible amounts to total amino sugar contents in the soil, being at least two orders of magnitude greater in the soils than in the soil inherent microbial biomass. Thus, amino sugars are significantly stabilized in soil.     

Sugars in soil and sweets for microorganisms: Review of origin,content, composition and fate

Sugars are the most abundant organic compounds in the biosphere because they are monomers of all polysaccharides. We summarize the results of the last 40 years on the sources, content, composition and fate of sugars in soil and discuss their main functions. We especially focus on sugar uptake, utilization and recycling by microorganisms as this is by far the dominating process of sugar transformation in soil compared to sorption, leaching or plant uptake. Moreover, sugars are the most important carbon (C) and energy source for soil microorganisms.Two databases have been created. The 1st database focused on the contents of cellulose, non-cellulose, hot-water and cold-water extractable sugars in soils (348 data, 32 studies). This enabled determining the primary (plant-derived) and secondary (microbially and soil organic matter (SOM) derived) sources of carbohydrates in soil based on the galactose + mannose/arabinose + xylose (GM/AX) ratio. The 2nd database focused on the fate of sugar C in soils (734 data pairs, 32 studies using ¹³C or ¹⁴C labeled sugars). ¹³C and ¹⁴C dynamics enabled calculating the: 1) initial rate of sugar mineralization, 2) mean residence time (MRT) of C of the applied sugars, and 3) MRT of sugar C incorporated into 3a) microbial biomass and 3b) SOM.The content of hexoses was 3–4 times higher than pentoses, because hexoses originate from plants and microorganisms. The GM/AX ratio of non-cellulose sugars revealed a lower contribution of hexoses in cropland and grassland (ratio 0.7–1) compare to forest (ratio 1.5) soils.¹³C and ¹⁴C studies showed very high initial rate of glucose mineralization (1.1% min⁻¹) and much higher rate of sugars uptake by microorganisms from the soil solution. Considering this rate along with the glucose input from plants and its content in soil solution, we estimate that only about 20% of all sugars in soil originate from the primary source – decomposition of plant litter and rhizodeposits. The remaining 80% originates from the secondary source – microorganisms and their residues. The estimated MRT of sugar C in microbial biomass was about 230 days, showing intense and efficient internal recycling within microorganisms. The assessed MRT of sugar C in SOM was about 360 days, reflecting the considerable accumulation of sugar C in microbial residues and its comparatively slow external recycling.The very rapid uptake of sugars by microorganisms and intensive recycling clearly demonstrate the importance of sugars for microbes in soil. We speculate that the most important functions of sugars in soil are to maintain and stimulate microbial activities in the rhizosphere and detritusphere leading to mobilization of nutrients by accelerated SOM decomposition – priming effects. We conclude that the actual contribution of sugar C (not only whole sugar molecules, which are usually determined) to SOM is much higher than the 10 ± 5% commonly measured based on their content.     

Soil organic matter,microbial properties,and aggregate stability under annual and perennial pastures

The use of annually sown pastures to provide winter forage is common in dairy farming in many regions of the world. Loss of organic matter and soil structural stability due to annual tillage under this management may be contributing to soil degradation. The comparative effects of annual ryegrass pastures (conventionally tilled and resown each year), permanent kikuyu pastures and undisturbed native vegetation on soil organic matter content, microbial size and activity, and aggregate stability were investigated on commercial dairy farms in the Tsitsikamma region of the Eastern Cape, South Africa. In comparison with soils under sparse, native grassy vegetation, those under both annual ryegrass and permanent kikuyu pasture had higher soil organic matter content on the very sandy soils of the eastern end of the region. By contrast, in the higher rainfall, western side, where the native vegetation was coastal forest, there was a loss of organic matter under both types of pasture. Nonetheless, soil organic C, K₂SO₄-extractable C, microbial biomass C, basal respiration, arginine ammonification and fluorescein diacetate hydrolysis rates and aggregate stability were less under annual than permanent pastures at all the sites. These results reflect the degrading effect of annual tillage on soil organic matter and the positive effect of grazed permanent pasture on soil microbial activity and aggregation. Soil organic C, microbial biomass C, K₂SO₄-extractable C, basal respiration and aggregate stability were significantly correlated with each other. The metabolic quotient and percentage of organic C present as microbial biomass C were generally poorly correlated with other measured properties but negatively correlated with one another. It was concluded that annual pasture involving conventional tillage results in a substantial loss of soil organic matter, soil microbial activity and soil physical condition under dairy pastures and that a system that avoids tillage needs to be developed.     

Carbon sequestration in secondary pasture soils: a chronosequence study in the South African Highveld

Soil restoration is a means of combating desertification in semi‐arid and arid parts of the world. There, vast areas of the cropped soil degrade, particularly because of the loss of organic matter. One approach to reverse this loss is the conversion of cropland into permanent grassland for use as pasture. This study was designed to evaluate how fast and to what degree degraded cropland may re‐sequester soil organic carbon (SOC) when converted into permanent secondary pasture. Topsoil samples (0–5, 5–10 and 10–20 cm) were taken from chronosequences of secondary pastures (1 to 31 years old) at three agro‐ecosystems in the semi‐arid Highveld of South Africa. Long‐term croplands and primary grassland used as pastures served as the controls. In bulk soil samples (<2 mm) and their clay (<2 µm), silt (2–20 µm), fine sand (20–250 µm) and coarse sand (250–2000 µm) fractions, the contents of carbon (C) and nitrogen were determined. In all three agro‐ecosystems, using a mono‐exponential model, the SOC stocks increased exponentially until a maximum was reached 10–95 years after land conversion. This gain in SOC was clearly pronounced for the top 0–5 cm of soil, but hardly detectable at 10–20‐cm depth. The sand fractions recovered organic C more rapidly but less completely than did the finer size separates. Overall, between 9.0 and 15.3 t of SOC were sequestered in the 0–20 cm of surface soil by this land conversion. Thus, the SOC recovery in the secondary pastures resulted in SOC stocks that were 29.6–93.9% greater than those in the arable land. Yet, in no agro‐ecosystem, at any soil depth, nor in any soil fraction, did the measured SOC content reach that of the primary grassland. In part this can be attributed to a slightly finer texture of the primary grassland that had not lost silt through wind erosion or had never been used as arable land because of slightly elevated clay contents. Overall it appears, however, that previous losses of SOM cannot easily be rectified, suggesting that the native primary grassland soils are only partially resilient to land‐use change.