Evidence for two gene pools of the Lima bean,Phaseolus lunatus L., in the Americas

Summary The lima bean,Phaseolus lunatus L., is a bean species with a broad distribution in the Americas that rivals that of common bean (P. vulgaris). In order to better understand the organization of genetic diversity and the pattern of domestication in lima bean, a review was conducted of the available information on the geographic distribution of wild and cultivated forms of this species. In addition, one-dimensional SDS polyacrylamide gel electrophoresis of seed proteins was also conducted on a sample of 84 wild, 6 weedy, and 426 cultivated forms. Results show that wild forms can be divided into two groups, one with smaller seeds and a very extensive distribution that includes Mexico, Central America, and the eastern slope of the Andes, and the other with a more circumscribed distribution on the western slope of the Andes in Ecuador and northern Peru. Electrophoretic analyses of seed proteins confirmed this subdivision and, additionally, showed that the large-seeded cultivars had been domesticated from the large-seeded wild lima beans in western South America. For the small-seeded lima bean cultivars, it was not possible to determine a domestication center as the most abundant protein pattern in the cultivars also had a widespread distribution in the small-seeded wild progenitor. Electrophoretic analyses showed, however, that domestication led to a reduction of genetic diversity in the small-seeded, Mesoamerican group, but not in the large-seeded group. The latter may be due to insufficient sampling of the larger-seeded, wild germplasm.     

Determination of the N-glycosylation patterns of seed proteins: applications to determine the authenticity and substantial equivalence of genetically modified (GM) crops

Methods have been developed to determine the N-glycosylation pattern of proteins at the single-seed level in two different biological systems. These were the well-characterized and widely consumed storage protein phaseolin from several species of Phaseolus (bean) and the α-amylase inhibitor from the same Phaseolus species expressed transgenically in pea. The N-glycosylation pattern of the α-amylase inhibitor expressed transgenically in pea was different from that of the inhibitor present in common bean (P. vulgaris), the species of origin of the gene. However, multivariate analysis showed that the differences in N-glycan patterns between the α-amylase inhibitors from common bean and pea were less than those between the inhibitors from common bean and two related bean species, lima bean (Phaseolus lunatus) and tepary bean (Phaseolus acutifolius).     

Purification and characterization of a cysteine protease inhibitor from chum salmon (Oncorhynchus keta) plasma

A cysteine protease inhibitor (CPI) in chum salmon ( Oncorhynchus keta) plasma (CSP) was detected after performing inhibitory activity staining against papain under nonreducing condition. The CPI was purified from CSP by affinity chromatography with a yield and purification ratio of 0.94% and 30.36-fold, respectively. CSP CPI had a molecular mass of 70 kDa based on the results of SDS-PAGE and Sephacryl S-100 gel filtration. CSP CPI was a glycoprotein based on the periodic acid-Schiff (PAS) staining of the SDS-PAGE gel and classified as a kininogen. CSP CPI was stable in the pH range of 6.0-9.0 with maximal stability at pH 7.0. CSP CPI presented thermal stability at temperatures below 50 degrees C and exhibited maximal activity at temperatures of 20-40 degrees C. CSP CPI was determined to be a noncompetitive inhibitor against papain, with an inhibitor constant (Ki) of 105 nM.     

Wholesale replacement of lima bean (<Emphasis Type="Italic">Phaseolus lunatus</Emphasis> L.) landraces over the last 30 years in northeastern Campeche,Mexico

Genetic erosion has been evaluated at the landrace level in the past, principally because the loss of landraces is believed to generate erosion at the allelic level; however, few studies had tested this hypothesis in the crop’s centers of diversity and domestication. Using microsatellite markers, we analyzed for genetic erosion in lima bean (Phaseolus lunatus) landraces over time in samples collected in 1979 and in 2007 in northeast Campeche, in the Yucatan peninsula, Mexico, an important diversity center and part of the putative domestication area for this crop. We found that the lima bean genetic pool from 1979 had a higher genetic diversity than the one for the 2007 pool (Nei’s diversity, H = 0.18 and 0.05, respectively). Although this result could not to be explained using a bottleneck analysis, a cluster analysis showed that the alleles present in 1979 were not the same as those found in 2007, indicating an allelic displacement in the genetic pool of the lima bean landraces in the last 30 years. This displacement could be due to the introduction of improved varieties or landraces, resulting in a displacement of local varieties or to changes in the Mayan criteria for selection of germplasm or both. This study showed that the loss of landraces can generate both quantitative and qualitative changes in the genetic pool of the domesticated species. Such changes are very important to consider when planning ex situ and in situ programs to conserve crop diversity in their domestication areas.     

Isolation of an Antifungal Pathogenesis‐Related Protein from Naked Oat (Avena nuda) Seeds

A novel antifungal protein was isolated from naked oat (Avena nuda) seeds by acetone fractionation, (NH₄)₂SO₄ precipitation, Q‐Sepharose ion‐exchange chromatography, chitin affinity chromatography, and Sephacryl S‐200 gel filtration chromatography. The antifungal protein exhibited a molecular mass of 23,760, as measured by gel filtration and SDS‐PAGE. Matrix‐assisted laser desorption ionization–time of flight MS analysis indicated that the protein was homologous with a permatin precursor from A. sativa. The protein from naked oats exhibited antifungal activity against Trametes sp. SQ01 (half‐maximal inhibitory concentration [IC₅₀] = 5.68μM), Trichoderma spp. (IC₅₀ = 0.83μM), and Chaetomium sp. R01.     

Functional properties of purified vicilins from cowpea (Vigna unguiculata) and pea (Pisum sativum) and cowpea protein isolate

The major storage globulins (vicilins) of cowpea (Vigna unguiculata) and pea (Pisum sativum) seeds were purified by ammonium sulfate precipitation, and a semipurified cowpea protein isolate (CPI) was prepared by isoelectric precipitation. Some of the functional properties of these proteins, including solubility, foaming, and emulsifying capacities, were investigated and compared. The solubility of purified cowpea vicilin was reduced at pH 5.0, increasing markedly below and above this value. Pea vicilin exhibited poor solubility between pH 5.0 and pH 6.0, and CPI was little soluble in the pH range from 4.0 to 6.0. At neutral pH, the emulsifying activity indexes (EAI) of purified pea vicilin and CPI were 194 and 291 m(2)/g, respectively, which compare quite favorably to EAIs of 110 and 133 m(2)/g for casein and albumin, respectively. Remarkably, purified cowpea vicilin exhibited an EAI of 490 m(2)/g, indicating a very high emulsifying activity. Purified cowpea and pea vicilins exhibited lower foaming capacities and foam stablity indexes (FSI) than CPI. FSI values of 80 and 260 min were obtained for purified pea and cowpea vicilin, respectively, whereas a FSI value of 380 min was obtained for CPI. These results are discussed in terms of the possible utilization of purified vicilins or protein isolates from pea and cowpea in the food processing industry.     

菜粉蝶颗粒体病毒包涵体蛋白的特性

菜粉蝶颗粒体病毒京农801株(PrGV-JN801),经蔗糖梯度离心纯化、碳酸钠溶解后,再经Sepharose 2B柱层析分离纯化,纯化的PrGV-JN801包涵体蛋白,在SDS-PAGE上呈1条带。该蛋白含有18种氨基酸,其中天门冬氨酸、谷氨酸和脯氨酸含量较高,酸性氨基酸含量为碱性氨基酸含量的2倍。氨基酸组分值可作为该病毒标准制剂的参考依据。PrGV-JN801包涵体蛋白的分子量为28000道尔顿,紫外吸收特性A_(max)/A_(min)=1.53。其荧光光谱,在pH7时,激发最大值在275nm,其次在235nm,最小值为245nm,发射最大值为304nm;在pH11时,激发光谱为285nm,发射光谱为351nm。     

Characterization of pectinesterase inhibitor in jelly fig (Ficus awkeotsang Makino) achenes

Pectinesterase inhibitor (PEI) extract prepared from intact jelly fig (Ficus awkeotsang Makino) achenes was separated by membrane (MWCO 3 and 10 kDa) and fractionated by a Sepharose G-50 gel permeation chromatography. Results from Sepharose G-50 gel permeation chromatography and concanavalin A Sepharose chromatography revealed PEI as polypeptides with molecular weights ranging from 3.5 to 4.5 kDa. Incubation of a PE (1 unit/mL)-PEI (2 mg/mL) mixture for 1 min decreased the PE activity by approximately 50%. On the basis of the results of Lineweaver-Burk double-reciprocal plots, Michaelis constant (K(m)) and V(max) values for jelly fig achenes PE (pH 6.0, 30 degrees C) were 0.78 mM -OCH3 and 1.09 microequiv of -COOH/min, respectively. In addition, PEI competitively inhibited both citrus and jelly fig achenes PEs.     

Survey of Underutilized Grain Legume Production Systems in the Southwest Agricultural Zone of Nigeria

ABSTRACT

A socio-economic survey of production systems was carried out in four out of the eight states that make up the southwest agricultural zone of Nigeria. A total of 157 minor grain legume farmers selected by multi-stage sampling were interviewed using structured questionnaires. The study shows that lima bean, pigeon pea, African yam bean, and bambara groundnut are the prominent minor grain legumes grown on less than 10% of the total cultivated land area. The minor grain legumes are grown on an average land size ranging from 0.2 to 0.4ha and predominantly in mixture with crops like cassava, maize, yam, sorghum, cocoyam, etc. The use of modern inputs like herbicides, pesticides, fertilizers, and improved varieties is uncommon in minor legume production systems. The cultivation of these legumes is more popular among the older members of the farming communities, about 78% of which are above 40 years of age. The average yield of the legumes on farms is considerably low, estimated at 271kg/ha, 265kg/ha, 174kg/ha, and 275kg/ha for lima bean, pigeon pea, African yambean, and bambara groundnut, respectively. Major constraints identified by the farmers include low market demand, inadequate seed supply, high cost of labour, and low yield. Research work is therefore needed in agronomy and breeding for improved yield and utilization for expanded market and, consequently, increased production.     

Peptides with angiotensin I-converting enzyme (ACE) inhibitory activity from defibrinated,hydrolyzed bovine plasma

Defibrinated bovine plasma (DBP) was treated with the microbial protease Flavourzyme to obtain protein hydrolysates with various degrees of hydrolysis (DH). The angiotensin I-converting enzyme (ACE) inhibiting activity of the hydrolyzed protein was assessed with hippuryl-His-Leu as the substrate. The amount of hippuric acid released, due to uninhibited ACE activity, was determined by high-performance liquid chromatography. ACE inhibiting (ACEI) activity was found to increase with increasing DH; the 43% DH hydrolysate exhibited the highest activity and had an IC(50) of 1.08 mg/mL. Peptide fractions with high ACEI activity were isolated using size exclusion chromatography. The fraction that possessed the highest ACEI activity contained peptides with GYP, HL(I), HPY, HPGH, L(I)F, SPY, and YPH sequence motifs, as determined by reversed-phase liquid chromatography-tandem mass spectrometry using a novel immonium precursor-ion scanning technique. Some of these motifs correspond to sequences found in bovine serum albumin, a potential source of ACEI peptides in bovine plasma.     

Cloning and characterization of a plant defensin VaD1 from azuki bean

A recombinant mungbean defensin VrD1 was previously shown to exhibit antifungal and bruchid-resistant activity. To study the function and regulation of VrD1, genomic DNAs of plant defensins were isolated from Vigna radiata VC6089A and azuki bean Vigna angularis Kao Hsiung No. 6. The azuki bean defensin genomic DNA VaD1 was sequenced and converted to VaD1 cDNA. VaD1 defensin was purified from Vigna angularis Kao Hsiung No. 6 to apparent homogeneity. The complete amino acid sequence of the purified VaD1 was determined and was found to be exactly the same as the sequence deduced from VaD1 cDNA. VaD1 is a basic protein containing 46 amino acids with four conserved disulfide bonds and shares high sequence homology (78.3%) with VrD1. VaD1 inhibited the growth of Fusarium oxysporum, Fusarium oxysporum f. sp. pisi, Staphylococcus epidermidis, and Salmonella typhimurium. VaD1 also inhibited in vitro protein synthesis and bruchid larval development, but was less active than the recombinant VrD1.     

棉花黄萎病拮抗细菌DS45-2菌株抗菌蛋白的分离纯化

枯草芽孢杆菌(Bacillus subtilis) DS45-2菌株产生的抗菌蛋白对棉花黄萎病有较强的抗性。用NB培养基摇床振荡培养DS45-2菌株(30℃,180r/min,48h),发酵液经硫酸铵盐析得到抗菌蛋白。经分析,抗菌蛋白对热稳定;对胃蛋白酶、胰蛋白酶均不敏感,对蛋白酶K部分敏感;在碱性条件下稳定,酸性条件下抑菌活性减弱。抗菌蛋白经DEAE Sepharose Fast Flow阴离子交换层析和反相层析后,分离纯化出一个抗菌蛋白0组分,经SDS-PAGE检测分子.质量约为23 kDa。     

Effect of intrinsic and extrinsic factors on the interaction of plant pectin methylesterase and its proteinaceous inhibitor from kiwi fruit

A proteinaceous pectin methylesterase inhibitor (PMEI) was isolated from kiwi fruit (Actinidia chinensiscv. Hayward) and purified by affinity chromatography on a cyanogen bromide (CNBr) Sepharose 4B-orange PME column. The optimal pH of banana PME activity was 7.0, whereas that for carrot and strawberry PME activity was 9.0. The optimal pH for the binding between kiwi fruit PMEI and these PMEs was 7.0. The kiwi fruit PMEI has a different affinity for PME depending on the plant source. The inhibition kinetics of kiwi fruit PMEI to banana and strawberry PME followed a noncompetitive type, whereas that to carrot PME followed a competitive type. The kiwi fruit PMEI was mixed with banana, carrot, and strawberry PME to obtain PMEI-PME complexes, which were then subjected to thermal (40-80 degrees C, atmospheric pressure) or high-pressure (10 degrees C, 100-600 MPa) treatment. Experimental data showed that the PMEI-PME complexes were easily dissociated by both thermal and high-pressure treatments.     

Purification and characterization of an alpha-mannosidase from the tropical fruit babaco ( Vasconcellea x heilbornii Cv. babaco)

An alpha-mannosidase (EC 3.2.1.24) present in the lyophilized latex of babaco ( Vasconcellea heilbornii ) has been purified to apparent homogeneity by native PAGE. The purification involves a three-step procedure with successive anion exchange with Q Sepharose HP, lectin affinity chromatography using ConA Sepharose 4B, and gel filtration using Superdex 200 prep grade. The molecular mass was determined to be in the range of 260-280 kDa by Superdex 200 prep grade gel filtration, and isoelectric focusing showed a pI range between 5.85 and 6.55, suggesting different glycosylated isoforms. The optimal temperature for the alpha-mannosidase was determined to lie between 50 and 60 degrees C, and the optimal pH was 4.5 at 50 degrees C. The K(m) value for p-nitrophenyl alpha-mannopyranoside (pNPM) was found to be 1.25 mM and the V(max), 2.4 microkat mg(-1) at 50 degrees C and 1.94 microkat mg(-1) at 40 degrees C. The pure alpha-mannosidase was specific for mannose and did not display activity for any other tested synthetic substrates.     

On the metabolism of glucosamine-1-14C in detached tomato leaves

In the previous paper, occurrence of glucosamine in tomato plants fed with a high level of ammonium nitrogen has been reported(18). For the first time, SOLMS and HASSID(17) discovered glucosamine in tissues of higher plants. They isolated uridine diphosphate N-acetylglucosamine from mung bean seedlings. Thereafter, uridine diphosphate N-acetylglucosamine and N-acetylgalactosamine were chromatographically isolated from dahlia tubers(7). PUTZTAI(16) has succeeded in crystalyzing of glucosamine isolated from the seeds of higher plants and determined aminosugar contents in 14 kinds of, seeds. He considered aminosugars to be the normal constituents of plant seeds. LIS et al(11) have isolated glycopeptide containing mannosc, glucosamine, nnd aspartic acid from pure soy bean hemagllutin, and Kasai et al(10) have shown the presence of the glucosamine in hydrolyzatcs of glycoprotcins of broad bean and soy bean. Recently glucosaminc metabolism in mung bean 141.S been studied 02. 19). Although several workers have reported on glucosaminc in plants as mentioned above, the finding in the previous paper that the amount of glucosamine in tomato plants increased with concentration of ammonium nitrogen in water culture solution is quite unique.     

Arabinogalactan proteins are incorporated in negatively charged coffee brew melanoidins

The charge properties of melanoidins in high molecular weight (HMw) coffee brew fractions, isolated by diafiltration and membrane dialysis, were studied. Ion exchange chromatography experiments with the HMw fractions showed that coffee brew melanoidins were negatively charged whereas these molecules did not expose any positive charge at the pH of coffee brew. Fractions with different ionic charges were isolated and subsequently characterized by means of the specific extinction coefficient (K(mix 405nm)), sugar composition, phenolic group content, nitrogen content, and the arabinogalactan protein (AGP) specific Yariv gel-diffusion assay. The isolated fractions were different in composition and AGP was found to be present in one of the HMw fractions. The AGP accounted for 6% of the coffee brew dry matter and had a moderate negative charge, probably caused by the presence of uronic acids. As the fraction that precipitated with Yariv was brown (K(mix 405nm) = 1.2), compared to a white color in the green bean, it was concluded that these AGPs had undergone Maillard reaction resulting in an AGP-melanoidin complex. The presence of mannose (presumably from galactomannan) indicates the incorporation of galactomannans in the AGP-melanoidin complex. As the uronic acid content in the more negatively charged melanoidin-rich, AGP-poor HMw fractions decreased, it was hypothesized that acidic groups are formed or incorporated during melanoidin formation.     

陆地棉巯基蛋白酶抑制剂基因克隆及其氨基酸序列分析

通过对植物中已知巯基蛋白酶抑制剂(cystatin)的保守性分析,设计1对简并引物,从陆地棉栽培种中棉所29(GossypiumhirsutumL.cv.Zhongmiansuo29)cDNA中克隆出1条巯基蛋白酶抑制剂基因片断,经测序和对测序结果在有关数据库中检索分析,发现该片段与1条中棉(G.arboreumL.)EST及1条雷蒙德氏棉(G.raimondiiL.)cDNA同源性高达96%。三者编码蛋白的氨基酸同源性达100%,且完全符合CPI的特征;所克隆基因片段的氨基酸序列与NBCI蛋白质数据库中登录的豇豆、向日葵、玉米、水稻中CPI均有高度同源性,表明该片段包含编码陆地棉CPI的完整序列。     

Biotransformation of common bean (Phaseolus vulgaris L.) flavonoid glycosides by bifidobacterium species from human intestinal origin

Bifidobacteria strains from human origin were screened for the specific activity (beta-glucosidase activity) involved in the metabolism of dietary flavonoids. Five strains with high beta-glucosidase activity were selected for further metabolism analyses (high-performance liquid chromatography separations) of flavonoid glycosides occurring in Phaseolus vulgaris L. (common bean) seeds and seedlings. All selected strains were found to be active in the conversion of kaempferol 3-O-glucoside, daidzin, genistin, and glycitin into their aglyconic forms. No metabolites were detected after the fermentation tests with the diglucosidic compound kaempferol 3-O-xylosylglucoside. In addition, to verify the effective bioavailability of flavonoid aglycones, the degradation rates of daidzein, genistein, glycitein, and kaempferol, following incubation with selected strains, were monitored. The results showed that the five selected strains of bifidobacteria, being active in the biotranformation of flavonoid glycosides occurring in common bean seeds and seedlings, could be considered as probiotic dietary adjuncts to improve the nutritional and health properties of flavonoid-based products, comprising hypothetical common bean food derivatives.     

Immobilization and characterization of beta-galactosidase from the plant gram chicken bean (Cicer arietinum). Evolution of its enzymatic actions in the hydrolysis of lactose.

beta-Galactosidase (beta-D-galactosidase galactohydrolase, EC 3.2.1. 23) isolated and purified from gram chicken bean was immobilized on cross-linked polyacrylamide gel. The activity yield was high and attained up to 72%. Compared with the free enzyme, the immobilized enzyme had a wider operational pH range and better thermal stability. Lyophilized pieces exhibited good stability when stored at room temperature for 60 days and a favorable operational stability when used eight times repeatedly without loss of enzymatic activity under the same conditions. Kinetic data (K(m), V(m), and E(a)) for the free and the immobilized enzymes were determined using O-nitrophenyl-beta-D-galactoside (ONPG) and lactose as substrates. The result of time courses of hydrolysis of lactose showed that beta-galactosidase from the plant gram chicken bean would have a promising application in the hydrolysis of lactose in milk.