Rhizodeposition-induced decomposition increases N availability to wild and cultivated wheat genotypes under elevated CO2

Elevated CO₂ may increase nutrient availability in the rhizosphere by stimulating N release from recalcitrant soil organic matter (SOM) pools through enhanced rhizodeposition. We aimed to elucidate how CO₂-induced increases in rhizodeposition affect N release from recalcitrant SOM, and how wild versus cultivated genotypes of wheat mediated differential responses in soil N cycling under elevated CO₂. To quantify root-derived soil carbon (C) input and release of N from stable SOM pools, plants were grown for 1 month in microcosms, exposed to ¹³C labeling at ambient (392 μmol mol⁻¹) and elevated (792 μmol mol⁻¹) CO₂ concentrations, in soil containing ¹⁵N predominantly incorporated into recalcitrant SOM pools. Decomposition of stable soil C increased by 43%, root-derived soil C increased by 59%, and microbial-¹³C was enhanced by 50% under elevated compared to ambient CO₂. Concurrently, plant ¹⁵N uptake increased (+7%) under elevated CO₂ while ¹⁵N contents in the microbial biomass and mineral N pool decreased. Wild genotypes allocated more C to their roots, while cultivated genotypes allocated more C to their shoots under ambient and elevated CO₂. This led to increased stable C decomposition, but not to increased N acquisition for the wild genotypes. Data suggest that increased rhizodeposition under elevated CO₂ can stimulate mineralization of N from recalcitrant SOM pools and that contrasting C allocation patterns cannot fully explain plant mediated differential responses in soil N cycling to elevated CO₂.     

Plant biomass influences rhizosphere priming effects on soil organic matter decomposition in two differently managed soils

We used a continuous labeling method of naturally ¹³C-depleted CO₂ in a growth chamber to test for rhizosphere effects on soil organic matter (SOM) decomposition. Two C3 plant species, soybean (Glycine max) and sunflower (Helianthus annus), were grown in two previously differently managed soils, an organically farmed soil and a soil from an annual grassland. We maintained a constant atmospheric CO₂ concentration at 400±5 ppm and δ¹³C signature at −24.4‰ by regulating the flow of naturally ¹³C-depleted CO₂ and CO₂-free air into the growth chamber, which allowed us to separate new plant-derived CO₂-C from original soil-derived CO₂-C in soil respiration. Rhizosphere priming effects on SOM decomposition, i.e., differences in soil-derived CO₂-C between planted and non-planted treatments, were significantly different between the two soils, but not between the two plant species. Soil-derived CO₂-C efflux in the organically farmed soil increased up to 61% compared to the no-plant control, while the annual grassland soil showed a negligible increase (up to 5% increase), despite an overall larger efflux of soil-derived CO₂-C and total soil C content. Differences in rhizosphere priming effects on SOM decomposition between the two soils could be largely explained by differences in plant biomass, and in particular leaf biomass, explaining 49% and 74% of the variation in primed soil C among soils and plant species, respectively. Nitrogen uptake rates by soybean and sunflower was relatively high compared to soil C respiration and associated N mineralization, while inorganic N pools were significantly depleted in the organic farm soil by the end of the experiment. Despite relatively large increases in SOM decomposition caused by rhizosphere effects in the organic farm soil, the fast-growing soybean and sunflower plants gained little extra N from the increase in SOM decomposition caused by rhizosphere effects. We conclude that rhizosphere priming effects of annual plants on SOM decomposition are largely driven by plant biomass, especially in soils of high fertility that can sustain high plant productivity.     

Turnover of soil organic matter and of microbial biomass under C3-C4 vegetation change: Consideration of C fractionation and preferential substrate utilization

Two processes contribute to changes of the δ¹³C signature in soil pools: ¹³C fractionation per se and preferential microbial utilization of various substrates with different δ¹³C signature. These two processes were disentangled by simultaneously tracking δ¹³C in three pools - soil organic matter (SOM), microbial biomass, dissolved organic carbon (DOC) - and in CO₂ efflux during incubation of 1) soil after C₃-C₄ vegetation change, and 2) the reference C₃ soil.The study was done on the Ap horizon of a loamy Gleyic Cambisol developed under C₃ vegetation. Miscanthus giganteus - a perennial C₄ plant - was grown for 12 years, and the δ¹³C signature was used to distinguish between ‘old’ SOM (>12 years) and ‘recent’ Miscanthus-derived C (<12 years). The differences in δ¹³C signature of the three C pools and of CO₂ in the reference C₃ soil were less than 1‰, and only δ¹³C of microbial biomass was significantly different compared to other pools. Nontheless, the neglecting of isotopic fractionation can cause up to 10% of errors in calculations. In contrast to the reference soil, the δ¹³C of all pools in the soil after C₃-C₄ vegetation change was significantly different. Old C contributed only 20% to the microbial biomass but 60% to CO₂. This indicates that most of the old C was decomposed by microorganisms catabolically, without being utilized for growth. Based on δ¹³C changes in DOC, CO₂ and microbial biomass during 54 days of incubation in Miscanthus and reference soils, we concluded that the main process contributing to changes of the δ¹³C signature in soil pools was preferential utilization of recent versus old C (causing an up to 9.1‰ shift in δ¹³C values) and not ¹³C fractionation per se.Based on the δ¹³C changes in SOM, we showed that the estimated turnover time of old SOM increased by two years per year in 9 years after the vegetation change. The relative increase in the turnover rate of recent microbial C was 3 times faster than that of old C indicating preferential utilization of available recent C versus the old C.Combining long-term field observations with soil incubation reveals that the turnover time of C in microbial biomass was 200 times faster than in total SOM. Our study clearly showed that estimating the residence time of easily degradable microbial compounds and biomarkers should be done at time scales reflecting microbial turnover times (days) and not those of bulk SOM turnover (years and decades). This is necessary because the absence of C reutilization is a prerequisite for correct estimation of SOM turnover. We conclude that comparing the δ¹³C signature of linked pools helps calculate the relative turnover of old and recent pools.     

Decomposition of carbon-14-labelled wheat straw in repeatedly fumigated and non-fumigated soils with different levels of heavy metal contamination

We analysed the decomposition of ¹⁴C-labelled straw at five different levels of heavy metal contamination (100-20,000 µg total Zn g^-1 soil) in non-fumigated and repeatedly fumigated soils. The soils were not spiked with Zn, but were taken from sites containing different heavy metal concentrations. Zn was only used as a reference and the effects observed are most likely due to this metal. Microbial biomass decreased with increasing heavy metal content of soils, paralleled generally by the decreasing amount of wheat straw ¹⁴C incorporated into the microbial biomass. In addition, the newly synthesised microbial biomass declined more rapidly as the incubation proceeded. In the repeatedly fumigated soils, microbial biomass ¹⁴C corresponded to roughly 50% of the maximum ¹⁴C incorporation of the non-fumigated soil. The relative decline during incubation was similar to that of the non-fumigated soil at the respective contamination level. These results reveal clearly that heavy metal effects on straw decomposition do not depend on the ratio of substrate C to microbial biomass C. In contrast to microbial biomass C, the mineralisation of the wheat straw was not seriously affected by heavy metal contamination. The same was true for all of the repeatedly fumigated treatments, where a much smaller microbial biomass mineralised nearly the same amount of straw as in the non-fumigated soils. However, repeated fumigation caused a strong reduction in the decomposition of soil organic matter. The ratio of CO₂-¹⁴C to microbial biomass ¹⁴C after 60 days was linearly related to the Zn concentration in both non-fumigated and repeatedly fumigated samples, clearly indicating that an additional energy cost is required by soil microorganisms with increasing heavy metal concentrations.     

Dynamics of maize (Zea mays L.) leaf straw mineralization as affected by the presence of soil and the availability of nitrogen

An incubation experiment was carried out with maize (Zea mays L.) leaf straw to analyze the effects of mixing the residues with soil and N amendment on the decomposition process. In order to distinguish between soil effects and nitrogen effects for both the phyllospheric microorganisms already present on the surface of maize straw and soil microorganisms the N amendment was applied in two different placements: directly to the straw or to the soil. The experiment was performed in dynamic, automated microcosms for 22 days at 15 °C with 7 treatments: (1) untreated soil, (2) non-amended maize leaf straw without soil, (3) N amended maize leaf straw without soil, (4) soil mixed with maize leaf straw, (5) N amended soil, (6) N amended soil mixed with maize leaf straw, and (7) soil mixed with N amended maize leaf straw. ¹⁵NH₄¹⁵NO₃ (5 at%) was added. Gas emissions (CO₂, ¹³CO₂ and N₂O) were continuously recorded throughout the experiment. Microbial biomass C, biomass N, ergosterol, δ¹³C of soil organic C and of microbial biomass C as well as ¹⁵N in soil total N, mineral N and microbial biomass N were determined in soil samples at the end of the incubation. The CO₂ evolution rate showed a lag-phase of two days in the non-amended maize leaf straw treatment without soil, which was completely eliminated when mineral N was added. The addition of N generally increased the CO₂ evolution rate during the initial stages of maize leaf straw decomposition, but not the cumulative CO₂ production. The presence of soil caused roughly a 50% increase in cumulative CO₂ production within 22 days in the maize straw treatments due to a slower decrease of CO₂ evolution after the initial activity peak. Since there are no limitations of water or N, we suggest that soil provides a microbial community ensuring an effective succession of straw decomposing microorganisms. In the treatments where maize and soil was mixed, 75% of microbial biomass C was derived from maize. We concluded that this high contribution of maize using microbiota indicates a strong influence of organisms of phyllospheric origin to the microbial community in the soil after plant residues enter the soil.     

Relative importance of substrate type and previous soil management in synthesis of microbial biomass and substrate mineralization

Our aim was to determine whether the soil microbial biomass, which has developed naturally over many years in a given ecosystem, is specially adapted to metabolize the plant‐derived substrate C of the ecosystem within which it developed or whether the nature of recently added substrate is the more important factor. To examine this, soils from three sites in close proximity (woodland, grassland and arable from the Broadbalk Experiment at Rothamsted Research, Harpenden, UK) were each amended with air‐dried wheat straw (Triticum aestivum), ryegrass leaves (Lolium perenne) or woodland leaf litter (mainly Quercus robur and Fagus sylvatica) in a fully replicated 3 × 3 factorial laboratory experiment. The initial mineralization rates (evolved CO₂‐C) were determined during the first 6.5 hours and again, together with the amount of microbial biomass synthesized (microbial biomass C), at 7, 14, 21, 30 and 49 days of incubation. The hourly rate of CO₂‐C production during the first 6.5 hours was slowest following leaf litter addition, while the added grass gave the fastest rates of CO₂‐C evolution both within and between soils. Ryegrass addition to the arable soil led to approximately four times more CO₂‐C being evolved than when it was added to the woodland soil, at an overall rate in the arable soils of 41 μg C g^?1 soil hour^?1. In each soil, the net amounts of CO₂‐C produced were in the order grass > straw > leaf litter. In each case, the amount produced by the added leaf litter was significantly less (P < 0.05) than either the added grass or straw. Overall, the trend was for much slower rates of mineralization of all substrates in the woodland soil than in either the arable or grassland soils. During 49 days of incubation in the woodland and grassland soils, the net total amounts of CO₂‐C evolved differed significantly (P < 0.01), with grass > straw > leaf litter, respectively. In the arable soil, the amounts of CO₂‐C evolved from added grass and straw were significantly larger (P < 0.01) than from the leaf litter treatment. Our findings indicated that the amounts of CO₂‐C evolved were not related to soil management or to the size of the original biomass but to the substrate type. The amount of biomass C synthesized was also in the order grass > straw > leaf litter, at all stages of incubation in the woodland and grassland soil. In the arable soil, the same effect was observed up to 14 days, and for the rest of the incubation the biomass C synthesized was in the order grass > straw > leaf litter. Up to three times more biomass C was synthesized from the added grass than from the other substrates in all soils throughout the incubation. The maximum biomass synthesis efficiency was obtained with grass (7% of added C). Overall, the woodland soil was most efficient at synthesizing biomass C and the arable soil the least. We conclude that substrate type was the overriding factor that determined the amount of new soil microbial biomass synthesized. Mineralization of substrate C by soil microorganisms was also influenced mainly by substrate type and less by soil management or size of original biomass.     

Moisture modulates rhizosphere effects on C decomposition in two different soil types

While it is well known that soil moisture directly affects microbial activity and soil organic matter (SOM) decomposition, it is unclear if the presence of plants alters these effects through rhizosphere processes. We studied soil moisture effects on SOM decomposition with and without sunflower and soybean. Plants were grown in two different soil types with soil moisture contents of 45% and 85% of field capacity in a greenhouse experiment. We continuously labeled plants with depleted ¹³C, which allowed us to separate plant-derived CO₂-C from original soil-derived CO₂-C in soil respiration measurements. We observed an overall increase in soil-derived CO₂-C efflux in the presence of plants (priming effect) in both soils. On average a greater priming effect was found in the high soil moisture treatment (up to 76% increase in soil-derived CO₂-C compared to control) than in the low soil moisture treatment (up to 52% increase). Greater plant-derived CO₂-C and plant biomass in the high soil moisture treatment contributed to greater priming effects, but priming effects remained significantly higher in the high moisture treatment than in the low moisture treatment after correcting for the effects of plant-derived CO₂-C and plant biomass. The response to soil moisture particularly occurred in the sandy loam soil by the end of the experiment. Possibly, production of root exudates increased with increased soil moisture content. Root exudation of labile C may also have become more effective in stimulating microbial decomposition in the higher soil moisture treatment and sandy loam soil. Our results indicate that moisture conditions significantly modulate rhizosphere effects on SOM decomposition.     

Fate of gram-negative bacterial biomass in soil—mineralization and contribution to SOM

Soil microorganisms contribute to the formation of non-living soil organic matter (SOM) by metabolic transformation of plant-derived material. After cell death, their biomass components with a specific molecular character become incorporated into SOM imprinting its chemical properties, although this process has not yet been quantified. In order to elucidate the contribution to SOM formation, we investigated the fate of gram-negative bacterial model biomass (Escherichia coli usually introduced into soil with manure or feces) during incubation of soil with isotopically (¹³C) and genetically (lux gene) labeled cells. The decline of living cells was monitored by the loss of bioluminescence. The carbon turnover and mineralization was balanced by bulk soil stable isotope analysis, and the persistence of nucleic acids was investigated by PCR amplification of the lux gene. During incubation, the number of viable E. coli cells decreased rapidly (99.9% within the first 42 d) serving as substrate for other microorganisms or for the formation of SOM, and bioluminescent cells could only be detected during the first 56 d. However, the lux gene was still detected after 224 d, which indicates stabilization of DNA in SOM. Although the survival of E. coli in soil is limited, only about 65% of the added labeled biomass carbon was mineralized to ¹³CO₂ and 51% remained in soil after 224 d with an average ¹³C recovery of 117%. The amount of ¹³C found in the PLFA representative of living cells had decreased to 25% of the initial value, suggesting a proportional decrease of the ¹³C in the soil microbial biomass. The extent of this decrease is higher than the mineralization of the bulk E. coli C and thus the difference of around 25% has to be stabilized as metabolites, or in non-living SOM. The data provide evidence that the genetic information and a considerable part of the carbon from dying bacterial biomass were retained in both the soil microbial food web and in non-living SOM.     

甜玉米/白三叶草秸秆还田的碳氮矿化研究

豆科/禾本科作物间套作后进行秸秆还田能补充土壤养分,缓解集约化农业生产对环境的压力.根据田间甜玉米/白三叶草套种各作物的秸秆产量,在恒温恒湿条件下进行室内培养,探讨秸秆不同方式还田后土壤微生物量碳、微生物量氮、呼吸产生的CO2和矿化产生的无机氮的变化规律.研究发现,各施肥处理的土壤微生物量碳、微生物量氮均在培养前期出现峰值,后期平稳降低;甜玉米秸秆和白三叶草绿肥同时还田的土壤微生物量碳、微生物量氮在各培养时期均最大,峰值分别达529.57 mg·kg-1和75.50 mg·kg-1,土壤呼吸产生的CO2最多;白三叶草绿肥单独还田有利于土壤无机氮的释放,培养第26 d 无机氮达到最大值,为29.81 mg·kg-1,之后一直在对照处理的1.60倍以上,第80 d达到2.48倍;甜玉米秸秆单独还田不利于土壤无机氮的释放,培养的第26 d至结束,甜玉米秸秆处理的无机氮为对照的13%～53%,最大为7.51 mg·kg-1;甜玉米秸秆配施尿素,短期内不利于土壤无机氮矿化.结果表明,施用有机物料能引起土壤有机质的短期快速转化,甜玉米秸秆和白三叶草绿肥配施有利于维持较大基数的土壤微生物量,单施白三叶草绿肥土壤微生物活性强,最有利于土壤速效氮的释放.     

Soil carbon dioxide flux, carbon sequestration and crop productivity in a tropical dryland agroecosystem: Influence of organic inputs of varying resource quality

In view of the significance of agricultural soils in affecting global C balance, the impact of manipulation of the quality of exogenous inputs on soil CO₂–C flux was studied in rice–barley annual rotation tropical dryland agroecosystem. Chemical fertilizer, Sesbania shoot (high quality resources), wheat straw (low quality resource) and Sesbania + wheat straw (high + low quality), all carrying equivalent recommended dose of N, were added to soil. A distinct seasonal variation in CO₂–C flux was recorded in all treatments, flux being higher during rice period, and much reduced during barley and summer fallow periods. During rice period the mean CO₂–C flux was greater in wheat straw (161% increase over control) and Sesbania + wheat straw (+129%) treatments; however, during barley and summer fallow periods differences among treatments were small. CO₂–C flux was more influenced by seasonal variations in water-filled pore space compared to soil temperature. In contrast, the role of microbial biomass and live crop roots in regulating soil CO₂–C flux was highly limited. Wheat straw input showed smaller microbial biomass with a tendency of rapid turnover rate resulting in highest cumulative CO₂–C flux. The Sesbania input exhibited larger microbial biomass with slower turnover rate, leading to lower cumulative CO₂–C flux. Addition of Sesbania to wheat straw showed higher cumulative CO₂–C flux yet supported highest microbial biomass with lowest turnover rate indicating stabilization of microbial biomass. Although single application of wheat straw or Sesbania showed comparable net change in soil C (18% and 15% relative to control, respectively) and crop productivity (32% and 38%), yet they differed significantly in soil C balance (374 and −3 g C m⁻² y⁻¹ respectively), a response influenced by the recalcitrant and labile nature of the inputs. Combining the two inputs resulted in significant increment in net change in soil C (33% over control) and crop yield (49%) in addition to high C balance (152 g C m⁻² y⁻¹). It is suggested that appropriate mixing of high and low quality inputs may contribute to improved crop productivity and soil fertility in terms of soil C sequestration.     

Decomposition de corps microbiens dans des sols fumiges au chloroforme: Effets du type de sol et de microorganisme

Five microbial species (Aspergillus flavus, Trichoderma viride, Streptomyces sp., Arthrobacter sp., Achromobacter liquefaciens) were cultivated in liquid media containing ¹⁴C-labelled glucose. The decomposition of these microorganisms was recorded in four different soils after chloroform fumigation by a technique related to that proposed by Jenkinson and Powlson, to determine the mineralization rate of microbial organic matter (K_c coefficient). Three treatments were used: untreated soil, fumigated soil alone and fumigated soil supplied with ¹⁴C-labelled cells. Total evolved CO₂ and ¹⁴CO₂ were measured after 7 and 14 days at 28°C.The labelled microorganisms enabled the calculation of mineralization rate K_c (K_c = mineralized microbial carbon/supplied microbial carbon). The extent of mineralization of labelled microbial carbon depended on the type of soil and on the microbial species. Statistical analysis of results at 7 days showed that 58% of the variance is taken in account by the soil effect and 32% by the microorganism effect. Between 35 and 49% of the supplied microbial C was mineralized in 7 days according to the soil type and the species of microorganism. Our results confirmed that the average value for K_c = 0.41 is acceptable, but K_c variability according to soil type must be considered.The priming effect on organic C and native microbial biomass mineralization, due to microbial carbon addition was obtained by comparison between the amount of non-labelled CO₂-C produced by fumigated soils with or without added labelled microorganisms: this priming effect was generally negligible.These results indicate that the major portion of the error of microbial biomass measurement comes from the K_c estimation.     

Linking dynamics of soil microbial phospholipid fatty acids to carbon mineralization in a C natural abundance experiment: Impact of heavy metals and acid rain

A ¹³C natural abundance experiment including GC-c-IRMS analysis of phospholipid fatty acids (PLFAs) was conducted to assess the temporal dynamics of the soil microbial community and carbon incorporation during the mineralization of plant residues under the impact of heavy metals and acid rain. Maize straw was incorporated into (i) control soil, (ii) soil irrigated with acid rain, (iii) soil amended with heavy metal-polluted filter dust and (iv) soil with both, heavy metal and acid rain treatment, over a period of 74 weeks. The mineralization of maize straw carbon was significantly reduced by heavy metal impact. Reduced mineralization rate of the added carbon likely resulted from a reduction of the microbial biomass due to heavy metal stress, while the efficiency of ¹³C incorporation into microbial PLFAs was hardly affected. Since acid rain did not significantly change soil pH, little impact on soil microorganisms and mineralization rate was found. Temporal dynamics of labelling of microbial PLFAs were different between bacterial and fungal PLFA biomarkers. Utilization of maize straw by bacterial PLFAs peaked immediately after the application (2 weeks), while labelling of the fungal biomarker 18:2ω6,9 was most pronounced 5 weeks after the application. In general, ¹³C labelling of microbial PLFAs was closely linked to the amounts of maize carbon present in the soil. The distinct higher labelling of microbial PLFAs in the heavy metal-polluted soils 74 weeks after application indicated a large fraction of available maize straw carbon still present in the soil.     

Soil microbial biomass C:N:P stoichiometry and microbial use of organic phosphorus

Microbial mineralization and immobilization of nutrients strongly influence soil fertility. We studied microbial biomass stoichiometry, microbial community composition, and microbial use of carbon (C) and phosphorus (P) derived from glucose-6-phosphate in the A and B horizons of two temperate Cambisols with contrasting P availability. In a first incubation experiment, C, nitrogen (N) and P were added to the soils in a full factorial design. Microbial biomass C, N and P concentrations were analyzed by the fumigation-extraction method and microbial community composition was analyzed by a community fingerprinting method (automated ribosomal intergenic spacer analysis, ARISA). In a second experiment, we compared microbial use of C and P from glucose-6-phosphate by adding ¹⁴C or ³³P labeled glucose-6-phosphate to soil. In the first incubation experiment, the microbial biomass increased up to 30-fold due to addition of C, indicating that microbial growth was mainly C limited. Microbial biomass C:N:P stoichiometry changed more strongly due to element addition in the P-poor soils, than in the P-rich soils. The microbial community composition analysis showed that element additions led to stronger changes in the microbial community in the P-poor than in the P-rich soils. Therefore, the changed microbial biomass stoichiometry in the P-poor soils was likely caused by a shift in the microbial community composition. The total recovery of ¹⁴C derived from glucose-6-phosphate in the soil microbial biomass and in the respired CO₂ ranged between 28.2 and 37.1% 66 h after addition of the tracer, while the recovery of ³³P in the soil microbial biomass was 1.4–6.1%. This indicates that even in the P-poor soils microorganisms mineralized organic P and took up more C than P from the organic compound. Thus, microbial mineralization of organic P was driven by microbial need for C rather than for P. In conclusion, our experiments showed that (i) the microbial biomass stoichiometry in the P-poor soils was more susceptible to additions of C, N and P than in the P-rich soils and that (ii) even in the P-poor soils, microorganisms were C-limited and the mineralization of organic P was mainly driven by microbial C demand.     

C and N turnover in structurally intact soils of different texture

The turnover of native and applied C and N in undisturbed soil samples of different texture but similar mineralogical composition, origin and cropping history was evaluated at −10 kPa water potential. Cores of structurally intact soil with 108, 224 and 337 g clay kg⁻¹ were horizontially sliced and ¹⁵N-labelled sheep faeces was placed between the two halves of the intact core. The cores together with unamended treatments were incubated in the dark at 20 °C and the evolution of CO₂-C determined continuously for 177 d. Inorganic and microbial biomass N and ¹⁵N were determined periodically. Net nitrification was less in soil amended with faeces compared with unamended soil. When adjusted for the NO₃-N present in soil before faeces was applied, net nitrification became negative indicating that NO₃-N had been immobilized or denitrified. The soil most rich in clay nitrified least N and ¹⁵N. The amounts of N retained in the microbial biomass in unamended soils increased with clay content. A maximum of 13% of the faeces ¹⁵N was recovered in the microbial biomass in the amended soils. CO₂-C evolution increased with clay content in amended and unamended soils. CO₂-C evolution from the most sandy soil was reduced due to a low content of potentially mineralizable native soil C whereas the rate constant of C mineralization rate peaked in this soil. When the pool of potentially mineralizable native soil C was assumed proportional to volumetric water content, the three soils contained similar proportions of potentially mineralizable native soil C but the rate constant of C mineralization remained highest in the soil with least clay. Thus although a similar availability of water in the three soils was ensured by their identical matric potential, the actual volume of water seemed to determine the proportion of total C that was potentially mineralizable. The proportion of mineralizable C in the faeces was similar in the three soils (70% of total C), again with a higher rate constant of C mineralization in the soil with least clay. It is hypothesized that the pool of potentially mineralizable C and C rate constants fluctuate with the soil water content.     

Microbial community abundance and structure are determinants of soil organic matter mineralisation in the presence of labile carbon

Altered rates of native soil organic matter (SOM) mineralisation in the presence of labile C substrate (‘priming’), is increasingly recognised as central to the coupling of plant and soil-biological productivity and potentially as a key process mediating the C-balance of soils. However, the mechanisms and controls of SOM-priming are not well understood. In this study we manipulated microbial biomass size and composition (chloroform fumigation) and mineral nutrient availability to investigate controls of SOM-priming. Effects of applied substrate (¹³C-glucose) on mineralisation of native SOM were quantified by isotopic partitioning of soil respiration. In addition, the respective contributions of SOM-C and substrate-derived C to microbial biomass carbon (MBC) were quantified to account for pool-substitution effects (‘apparent priming’). Phospholipid fatty acid (PLFA) profiles of the soils were determined to establish treatment effects on microbial community structure, while the ¹³C-enrichment of PLFA biomarkers was used to establish pathways of substrate-derived C-flux through the microbial communities. The results indicated that glucose additions increased SOM-mineralisation in all treatments (positive priming). The magnitude of priming was reduced in fumigated soils, concurrent with reduced substrate-derived C-flux through putative SOM-mineralising organisms (fungi and actinomycetes). Nutrient additions reduced the magnitude of positive priming in non-fumigated soils, but did not affect the distribution of substrate-derived C in microbial communities. The results support the view that microbial community composition is a determinant of SOM-mineralisation, with evidence that utilisation of labile substrate by fungal and actinomycete (but not Gram-negative) populations promotes positive SOM-priming.     

The initial rate of C substrate utilization and longer-term soil C storage

The initial reaction of microbial transformation and turnover of soil carbon inputs may influence the magnitude of longer-term net soil C storage. The objective of this study was to test the merit of the hypothesis that the more rapid substrates are initially utilized, the longer the residual products remain in the soil. We used simple model C compounds to determine their decomposition rates and persistence over time. Pure ¹⁴C compounds of glucose, acetate, arginine, oxalate, phenylalanine, and urea were incubated in soil for 125 days at 24°C. Total respired CO₂ and ¹⁴CO₂ was quantitatively measured every day for 15 days and residual soil ¹⁴C after 125 days. The percent ¹⁴C remaining in the soil after 125 days of incubation was positively and significantly correlated with the percent substrate utilized in the first day of incubation. The ¹⁴C in the microbial biomass ranged from 4–15% after 15 days and declined through day 125, contributing significantly to the ¹⁴C that evolved over the longer time period. Priming of ¹²C soil organic matter (SOM) was negative at day 3 but became positive, reaching a maximum on day 12; the total increase in soil C from added substrates was greater than the primed C. The primed C came from ¹²C SOM rather than the microbial biomass. This data supports the concept that the more rapidly a substrate is initially mineralized, the more persistent it will be in the soil over time.     

Decomposition of maize residues after manipulation of colonization and its contribution to the soil microbial biomass

A 28-day incubation experiment at 12°C was carried out on the decomposition of maize leaf litter to answer the questions: (1) Is the decomposition process altered by chemical manipulations due to differences in the colonization of maize leaf litter? (2) Do organisms using this maize material contribute significantly to the soil microbial biomass? The extraction of the maize straw reduced its initial microbial biomass C content by 25%. Fumigation and extraction eliminated the microbial biomass by 88%. In total, 17% of added maize straw C was mineralized to CO₂ during the 28-day incubation at 12°C in the treatment with non-manipulated straw. Only 14% of added C was mineralized in the treatment with extracted straw as well as in the treatment with fumigated and extracted straw. The net increase in microbial biomass C was 79 μg g^?1 soil in the treatment with non-manipulated straw and an insignificant 9 μg g^?1 soil in the two treatments with manipulated straw. However, the net increase did not reflect the fact that the addition of maize straw replaced an identical 58% (≈180 μg g^?1 soil) of the autochthonous microbial biomass C₃-C in all three straw treatments. In the two treatments with manipulated straw, the formation of maize-derived microbial biomass C₄-C was significantly reduced by 25%. In the three straw treatments, the ratio of fungal ergosterol-to-microbial biomass C ratio showed a constant 60% increase compared to the control, and the contents of glucosamine and muramic acid increased by 18%. The average fungal C/bacterial C ratio was 3.6 in the soil and 5.0 in the recovered maize straw, indicating that fungal dominance was not altered by the initial chemical manipulations of the maize straw-colonizing microorganisms.     

Microbial biomass and mineralization-immobilization of nitrogen in some agricultural soils

Summary The chloroform fumigation-incubation method (CFIM) was used to measure the microbial biomass of 17 agricultural soils from Punjab Pakistan which represented different agricultural soil series. The biomass C was used to calculate biomass N and the changes occurring in NH₄ ⁺-N and NO₃ ^–-N content of soils were studied during the turnover of microbial biomass or added C source. Mineral N released in fumigated-incubated soils and biomass N calculated from biomass C was correlated with some N availability indexes.The soils contained 427–1240 kg C as biomass which represented 1.2%–6.9% of the total organic C in the soils studied. Calculations based on biomass C showed that the soils contained 64–186 kg N ha^–1 as microbial biomass. Immobilization of NCO₃ ^–-N was observed in different soils during the turnover of microbial biomass and any net increase in mineral N content of fumigated incubated soils was attributed entirely to NH₄ ⁺-N.Biomass N calculated from biomass C showed non-significant correlation with different N availability indexes whereas mineral N accumulated in fumigated-incubated soils showed highly significant correlations with other indexes including N uptake by plants.     

Rhizosphere priming effect: Its functional relationships with microbial turnover, evapotranspiration, and C–N budgets

Understanding soil organic matter (SOM) decomposition and its interaction with rhizosphere processes is a crucial topic in soil biology and ecology. Using a natural ¹³C tracer method to separately measure SOM-derived CO₂ from root-derived CO₂, this study aims to connect the level of rhizosphere-dependent SOM decomposition with the C and N balance of the whole plant–soil system, and to mechanistically link the rhizosphere priming effect to soil microbial turnover and evapotranspiration. Results indicated that the magnitude of the rhizosphere priming effect on SOM decomposition varied widely, from zero to more than 380% of the unplanted control, and was largely influenced by plant species and phenology. Balancing the extra soil C loss from the strong rhizosphere priming effect in the planted treatments with C inputs from rhizodeposits and root biomass, the whole plant–soil system remained with a net carbon gain at the end of the experiment. The increased soil microbial biomass turnover rate and the enhanced evapotranspiration rate in the planted treatments had clear positive relationships with the level of the rhizosphere priming effect. The rhizosphere enhancement of soil carbon mineralization in the planted treatments did not result in a proportional increase in net N mineralization, suggesting a possible de-coupling of C cycling with N cycling in the rhizosphere.     

Isotopic analysis of respired CO2 during decomposition of separated soil organic matter pools

A detailed understanding of the processes that contribute to the δ¹³C value of respired CO₂ is necessary to make links between the isotopic signature of CO₂ efflux from the soil surface and various sources within the soil profile. We used density fractionation to divide soils from two forested sites that are a part of an ongoing detrital manipulation experiment (the Detrital Input and Removal Treatments, or DIRT project) into two soil organic matter pools, each of which contributes differently to total soil CO₂ efflux. In both sites, distinct biological pools resulted from density fractionation; however, our results do not always support the concept that the light fraction is readily decomposable whereas the heavy fraction is recalcitrant. In a laboratory incubation following density fractionation we found that cumulative respiration over the course of the incubation period was greater from the light fraction than from the heavy fraction for the deciduous site, while the opposite was true for the coniferous site.Use of stable isotopes yielded insight as to the nature of the density fractions, with the heavy fraction solids from both forests isotopically enriched relative to those of the light fraction. The isotopic signature of respired CO₂, however, was more complicated. During incubation of the fractions there was an initial isotopic depletion of the respired CO₂ compared to the substrate for both soil fractions from both forests. Over time for both fractions of both soils the respired δ¹³C reflected more closely the initial substrate value; however, the transition from depleted to enriched respiration relative to substrate occurs at a different stage of decomposition depending on site and substrate recalcitrance. We found a relationship between cumulative respiration during the incubation period and the duration of the transition from isotopically depleted to enriched respiration in the coniferous site but not the deciduous site. Our results suggest that a shift in microbial community or to dead microbial biomass as a substrate could be responsible for the transition in the isotopic signature of respired CO₂ during decomposition. It is likely that a combination of organic matter quality and isotopic discrimination by microbes, in addition to differences in microbial community composition, contribute to the isotopic signature of different organic matter fractions. It is apparent that respired δ¹³CO₂ cannot be assumed to be a direct representation of the substrate δ¹³C. Detailed knowledge of the soil characteristics at a particular site is necessary to interpret relationships between the isotopic values of a substrate and respired CO₂.