Influence of foot conformation on duration of competitive life in a Dutch Warmblood horse population

Reasons for performing study: Warmblood horse studbooks aim to breed horses with a conformation that will enable elite future sports performance, but reduce the risk of early retirement due to lameness. Negative conformational traits, such as asymmetrical or ‘uneven’ forefeet may possibly shorten the career of sporthorses. Objectives: To investigate the significance of foot conformation at young age to duration of the career of sporthorses. Methods: Databases of the Royal Dutch Warmblood Studbook (KWPN) and of the Royal Dutch Equestrian Sports Federation (KNHS) were matched and resulted in a dataset comprising 23,116 records of horses for which their conformation scores and duration of their sports career were available. Survival analysis was used to determine which of the conformation traits had a significant effect on duration of sports career in dressage and jumping at basic and elite level. Results: Duration of competitive life was shorter for jumping than for dressage. A different set of risk factors was found for each level and discipline. The trait ‘uneven feet’ tended to shorten the competitive life in dressage, but was a significant risk factor at the elite level of jumping. Conclusions: Limb conformation and, in particular, the conformation of the distal limb, are important for duration of competitive life. From the prevalence of uneven feet in sports disciplines, it may be concluded that this is an undesirable trait, particularly at the elite level of jumping, since uneven feet have a detrimental effect on the duration of competitive life in a sporthorse population. Potential relevance: This study provided evidence that the conformation trait uneven feet has a negative effect on Warmblood jumping performance and, therefore, breeders should be encouraged to avoid this phenomenon at foal age.     

Heritability of foot conformation and its relationship to sports performance in a Dutch Warmblood horse population

Reasons for performing study: Warmblood horse studbooks aim to breed horses with a conformation that will enable elite future performance, but reduce the risk of injuries and lameness. Negative conformational traits, such as asymmetrical or ‘uneven’ forefeet would possibly diminish performance. Objectives: To assess the prevalence and heritability of uneven feet and its genetic relationship to other conformation traits as well as to sporting performance later in life in Warmblood riding horses. Methods: The databases of the Royal Dutch Warmblood Studbook (KWPN, n = 44,840 horses) and Royal Dutch Equestrian Sports Federation (KNHS, n = 33,459 horses in dressage and n = 30,474 horses in showjumping) were linked through the unique number of each registered horse. Therefore, heritabilities and genetic and phenotypic correlations could be estimated from the scores of the jury at studbook admission and the sports performance of that population in dressage and jumping over the period 1990–2002. Results: The prevalence of uneven feet was 5.3% on average, and increased from under 4.5% during the first 3 years of recording to over 8% in the years from 2000 onwards. Heritability estimates of foot conformation traits were moderate and ranged from 0.16 for heel height to 0.27 for hoof shape. The genetic correlation between the trait of uneven feet and performance in competition was negative but weak: ?0.09 with dressage and ?0.12 with showjumping. Conclusions: Predisposition to uneven feet can be reduced by selection. Because of weak genetic correlations, the increased prevalence is not directly associated with selection for better sports performance or higher conformation grade. If the trait ‘uneven feet’ arises from a disproportionate relationship between height at the withers and neck length, then selection on conformation grade might result in development of uneven feet. In general, limb conformation has a moderate genetic relationship to conformation grade and foot conformation traits have a genetic relationship to sporting performance. Reducing occurrence of uneven feet by selection is possible, without limiting progress in sport performance.     

A Note on the Heritability of Reactivity Assessed at Field Tests for Danish Warmblood Horses

Temperament traits in horses, especially reactivity, are an important trait in relation to human–horse accidents and the welfare of the horses. However, so far, temperament is often not included in many horse breeding programs. Most of the behavioral genetic studies in horses have been based on indirect indications of a sire effect and not on estimations of the heritability of temperament traits. Therefore, the aim of this study was to estimate the heritability of behavior reactions related to reactivity observed in a practical situation, that is, during the evaluation of the conformation of the horse at field tests. The study included 323 3-year-old Warmblood horses. Data were analyzed according to an animal model, and the estimation was based on restricted maximum likelihood. Results showed a low (0.17) heritability of reactivity. Probably because of the limited number of horses in the study, a high standard error was untainted. Nevertheless, results suggested a genetic variation of reactivity when assessed at field tests, but further research is needed before reactivity can be incorporated as a selection criteria into a breeding program.     

Consequences of specialized breeding in the Swedish Warmblood horse population

In many European warmblood studbooks, clear specialization toward either jumping or dressage horses is evident. The Swedish Warmblood (SWB) is also undergoing such specialization, creating a possible need for separate breeding programs and a discipline-specific Young Horse Test (YHT). This study investigated how far specialization of the SWB breed has proceeded and the potential consequences. Individuals in a population of 122,054 SWB horses born between 1980 and 2020 were categorized according to pedigree as jumping (J), dressage (D), allround (AR), or thoroughbred (Th). Data on 8,713 J horses and 6,477 D horses assessed for eight traits in YHT 1999–2020 were used to estimate genetic parameters within and between J and D horses and between different periods. Future scenarios in which young horses are assessed for either jumping or dressage traits at YHT were also analyzed. More than 80% of horses born in 1980–1985 were found to be AR horses, while 92% of horses born in 2016–2020 belonged to a specialized category. The average relationship within J or D category was found to increase during the past decade, whereas the relationship between these categories decreased. Heritability estimates for gait traits were 0.42–0.56 for D horses and 0.25–0.38 for J horses. For jumping traits, heritability estimates were 0.17–0.26 for J horses and 0.10–0.18 for D horses. Genetic correlations between corresponding traits assessed in J and D horses were within the range 0.48–0.81, with a tendency to be lower in the late study period. In the future scenarios, heritability and genetic variance both decreased for traits that were not assessed in all horses, indicating that estimation of breeding value and genetic progress for these traits could be affected by a specialized YHT. However, ranking of sires based on estimated breeding values (EBVs) and accuracy of EBVs was only slightly altered for discipline-specific traits. With continued specialization in SWB, specialization of the YHT should thus be considered.     

Analysis of competition performance in dressage and show jumping of Dutch Warmblood horses

Most Warmblood horse studbooks aim to improve the performance in dressage and show jumping. The Dutch Royal Warmblood Studbook (KWPN) includes the highest score achieved in competition by a horse to evaluate its genetic ability of performance. However, the records collected during competition are associated with some aspects that might affect the quality of the genetic evaluation based on these records. These aspects include the influence of rider, censoring and preselection of the data. The aim of this study was to quantify the impact of rider effect, censoring and preselection on the genetic analysis of competition data of dressage and show jumping of KWPN. Different models including rider effect were evaluated. To assess the impact of censoring, genetic parameters were estimated in data sets that differed in the degree of censoring. The effect of preselection on variance components was analysed by defining a binary trait (sport‐status) depending on whether the horse has a competition record or not. This trait was included in a bivariate model with the competition trait and used all horses registered by KWPN since 1984. Results showed that performance in competition for dressage and show jumping is a heritable trait (h² ~ 0.11–0.13) and that it is important to account for the effect of rider in the genetic analysis. Censoring had a small effect on the genetic parameter for highest performance achieved by the horse. A moderate heritability obtained for sport‐status indicates that preselection has a genetic basis, but the effect on genetic parameters was relatively small.     

Uneven feet in a foal may develop as a consequence of lateral grazing behaviour induced by conformational traits

REASONS FOR PERFORMING STUDY: Conformational traits are important in breeding, since they may be indicative for performance ability and susceptibility to injuries. OBJECTIVES: To study whether certain desired conformational traits of foals are related to lateralised behaviour while foraging and to the development of uneven feet. METHODS: Twenty-four Warmblood foals, born and raised at the same location, were studied for a year. Foraging behaviour was observed by means of weekly 10 min scan-sampling for 8 h. A preference test (PT) was developed to serve as a standardised tool to determine laterality. The foals were evaluated at age 3, 15, 27 and 55 weeks. The PT and distal limb conformation were used to study the relation between overall body conformation, laterality and the development of uneven feet. Pressure measurements were used to determine the loading patterns under the feet. RESULTS: About 50% of the foals developed a significant preference to protract the same limb systematically while grazing, which resulted in uneven feet and subsequently uneven loading patterns. Foals with relatively long limbs and small heads were predisposed to develop laterality and, consequently unevenness. CONCLUSIONS: Conformational traits may stimulate the development of laterality and therefore indirectly cause uneven feet.     

A multiple-phenotype imputation procedure as a method for prediction of cheese-making efficiency in Spanish Assaf sheep

Sheep milk is mainly intended to manufacture a wide variety of high-quality cheeses. The ovine cheese industry would benefit from an improvement, through genetic selection, of traits related to the milk coagulation properties (MCPs) and cheese yield-related traits, broadly denoted as “cheese-making traits.” Considering that routine measurements of these traits needed for genetic selection are expensive and time-consuming, this study aimed to evaluate the accuracy of a cheese-making phenotype imputation method based on the information from official milk control records combined with the pH of the milk. For this study, we analyzed records of milk production traits, milk composition traits, and measurements of cheese-making traits available from a total of 1,145 dairy ewes of the Spanish Assaf sheep breed. Cheese-making traits included five related to the MCPs and two cheese yield-related traits. The milk and cheese-making phenotypes were adjusted for significant effects based on a general linear model. The adjusted phenotypes were used to define a multiple-phenotype imputation procedure for the cheese-making traits based on multivariate normality and Markov chain Monte Carlo sampling. Five of the seven cheese-making traits considered in this study achieved a prediction accuracy of 0.60 computed as the correlation between the adjusted phenotypes and the imputed phenotypes. Particularly the logarithm of curd-firming time since rennet addition (logK₂₀) (0.68), which has been previously suggested as a potential candidate trait to improve the cheese ability in this breed, and the logarithm of the ratio between the rennet clotting time and the curd firmness at 60 min (logRCT/A60) (0.65), which has been defined by other studies as an indicator trait of milk coagulation efficiency. This study represents a first step toward the possible use of the phenotype imputation of cheese-making traits to develop a practical methodology for the dairy sheep industry to impute cheese-making traits only based on the analysis of a milk sample without the need of pedigree information. This information could be also used in future planning of specific breeding programs considering the importance of the cheese-making efficiency in dairy sheep and highlights the potential of phenotype imputation to leverage sample size on expensive, hard-to-measure phenotypes.     

Genetic diversity in an indigenous horse breed: implications for mating strategies and the control of future inbreeding

The Franches-Montagnes is an indigenous Swiss horse breed, with approximately 2500 foalings per year. The stud book is closed, and no introgression from other horse breeds was conducted since 1998. Since 2006, breeding values for 43 different traits (conformation, performance and coat colour) are estimated with a best linear unbiased prediction (BLUP) multiple trait animal model. In this study, we evaluated the genetic diversity for the breeding population, considering the years from 2003 to 2008. Only horses with at least one progeny during that time span were included. Results were obtained based on pedigree information as well as from molecular markers. A series of software packages were screened to combine best the best linear unbiased prediction (BLUP) methodology with optimal genetic contribution theory. We looked for stallions with highest breeding values and lowest average relationship to the dam population. Breeding with such stallions is expected to lead to a selection gain, while lowering the future increase in inbreeding within the breed.     

Genetic correlations between similar traits in the Danish and Swedish Warmblood sport horse populations

Genetic correlations between phenotypically similar or related traits tested at young horse performance tests for Danish Warmblood (DWB) and Swedish Warmblood (SWB) horses were calculated using Multi-trait Across Country Evaluation (MACE). Data comprised stallions with an estimated breeding value (EBV) from the national genetic evaluations (NGE) based on at least 10 progeny tested in performance tests, and the ancestors of those stallions in two generations. The DWB data included 349 stallions and the SWB data 426 stallions. Of these, 28 had EBVs in both DWB and SWB. Additionally 151 pedigree animals were common between DWB and SWB. The dependent variables used were NGE results of stallions born 1980 and later, which reduced the number of common stallions with EBVs to 23. The genetic correlations were very high for jumping traits (0.99) and dressage related traits (0.89–0.97). For conformation traits correlations varied between 0.10 and 0.98. Because of the high genetic correlations and frequent use of same or closely related foreign stallions, breeders of both DWB and SWB would benefit from using the NGEs for performance traits across countries, although the genetic correlations do not consider differences in genetic merit levels between the populations. It would be feasible to perform a joint genetic evaluation using MACE, which would improve the reliability of estimated breeding values, and enable ranking of all stallions according to the national scale of each country.     

应用BLUP方法对猪繁殖性状和生长性状遗传评估的研究

【目的】估计杜洛克猪(Duroc,DD)、长白猪(Landrace,LL)、大白猪(Yorkshire,YY)繁殖性状和生长性状的遗传参数,分析不同年份育种值变化的遗传趋势,为制定合理的育种方案提供理论依据。【方法】以杜洛克猪、长白猪、大白猪繁殖性状和生长性状的性能测定数据为研究材料,其中繁殖性状数据10 963条,包括总产仔数(total number born,TNB)、产活仔数(number born alive,NBA)、出生窝重(litter born weight,LBW)和21日龄窝重(litter weight at 21 days,LW21);生长性状数据25 257条,包括达100 kg体重日龄(age at 100 kg live weight,AGE)和达100 kg体重背膘厚(backfat adjusted to 100 kg,BF)。采用基于动物模型的最佳线性无偏预测(best linear unbiased prediction,BLUP)方法,使用ASReml统计分析软件进行遗传力、遗传相关和育种值估计。【结果】TNB、NBA和LBW的遗传力在0.08~0.20之间,LW21的遗传力在0.02~0.05之间;AGE和BF的遗传力在0.22~0.37之间。繁殖性状TNB、NBA、LBW、LW21的遗传相关系数总体分布在0.20~0.97之间,呈中等偏上正相关;生长性状AGE和BF的遗传相关系数分布在-0.07~-0.03之间,呈微弱的负相关。杜洛克猪繁殖性状的遗传趋势上升幅度较大,长白猪、大白猪繁殖性状的遗传趋势上升幅度较小;生长性状中AGE的遗传趋势均呈下降趋势,且下降幅度较大,BF的遗传趋势变化幅度较小。【结论】本研究对杜洛克猪、长白猪、大白猪繁殖性状和生长性状的遗传参数和遗产趋势进行了准确的评估,结果可为该育种场的育种工作提供参考。     

Genetic parameters estimation in an Italian horse native breed to support the conversion from agricultural uses to riding purposes

Horses are nowadays mainly used for sport and leisure purposes, and several local breeds, traditionally used in agriculture, are exposed to the risk of extinction. The long-term survival of local horse breeds depends on strategies to both monitor their genetic diversity and to find their sustainable role in the equine market. Thus, several local horse breeds need to adapt their breeding objective to allow a modernization process. The Bardigiano is an example of such horse breeds; we, therefore, studied the existing evaluation protocol from a genetic standpoint to assess the protocol's suitability to convert the Bardigiano from an agricultural to a riding horse. To this end, we estimated genetic parameters for four conformation measurements, ten grading traits and 23 linear traits. For conformation measurements, the heritabilities ranged from 0.31 for cannon bone circumference to 0.63 for height at withers. For conformation and attitude grading traits, the highest heritability (0.34) was estimated for development and the lowest (0.09) for gaits. The heritabilities for linear traits ranged from 0.05 for the leg straightness to 0.32 for the coat colour. Genetic correlations between linear traits and corresponding grading traits varied considerably, ranging from −0.42 to 0.98. This study showed that the current evaluation protocol in the Bardigiano horse is appropriate for genetic evaluation. Genetic parameters estimation can, in turn, be used to develop novel breeding values to help this conversion. Our study paves the way to optimize the Bardigiano horse breeding programme, and it may help several other local horse breeds experiencing similar issues.     

Breeding for societally important traits in pigs

Pig breeding programs traditionally focus on the genetic improvement of production and reproduction traits that have a clear economic value. Because citizens and consumers increasingly attach value to traits that have little or no direct relationship to production costs or to the price of a product, pig breeding organizations want to pay more attention to societally important traits, such as the welfare and health of pigs, the ecological effects of pork production, and the healthiness and sensory quality of pork. Most societally important traits have an economic and a noneconomic value and are sufficiently heritable for effective genetic selection, although many genetic and phenotypic (co)-variances still have to be estimated. However, it often is not clear to a pig breeding organization how it may deal with the noneconomic value of breeding-goal traits. In this study, a retrospective selection-index method is proposed to obtain the proper weights for societally important traits in the breeding goal. First, the genetic-progress space for each breeding-goal trait is explored by increasing the weights, in a stepwise manner, to each societally important trait in the breeding goal, starting from zero. Subsequently, a pig breeding organization can adopt the resulting genetic-progress scenario that it considers most sustainable or most acceptable. The weights underlying the adopted scenario are considered to be the proper breeding-goal weights. The noneconomic value of each societally important breeding-goal trait is found by deducting its economic value from its obtained weight and is thereby expressed in monetary units. In addition to obtaining weights for societally important breeding-goal traits, the proposed method offers the possibility to estimate the societal costs of selecting for economic traits only, as well as the societal benefits and the economic costs of selecting for traits with a noneconomic value. The method is therefore a useful tool for the development of sustainable breeding goals. An example has been worked out for a sow-line breeding program.     

Should We Agree to Disagree? An Evaluation of the Inter-Rater Reliability of Gait Quality Traits in Franches-Montagnes Stallions

Gait quality, that is, the way horses move according to functional and aesthetic principles, englobes many traits that are scored by experts during breeding competitions. The experts can score a trait on a subjective valuating (SV) scale or on a linear profiling (LP) scale representing the biological extremes of the population. However, the reliability of the appraisal of gait quality traits has not been extensively evaluated. In this study, seven breed experts appraised the walk and trot quality of 24 Franches-Montagnes stallions presented in hand on a sand track. Inter-rater reliabilities of six traits (five SV and one LP) at the walk and eight traits (five SV and three LP) at the trot were estimated with intraclass correlation coefficients (ICCs). The inter-rater reliabilities were poor (ICC < 0.50). The scale anchoring varied between experts, and the variance of scores was low. There were no systematic differences in inter-rater reliability between LP and SV traits. Future studies should determine whether the inter-rater reliabilities may be increased by a more precise definition of the scores within each trait to improve the absolute agreement between experts, by a more uniform scale anchoring between experts, and by decreasing the number of scale items. However, considering the inherent limitations of the human eye in observing high-speed movement, the use of a field-applicable kinematic measurement system may support breeding experts in the appraisal of gait quality traits in the future.     

Functional‐trait ecology of the plateau pika Ochotona curzoniae in the Qinghai–Tibetan Plateau ecosystem

Understanding a species' functional traits allows for a directed and productive perspective on the role a species plays in nature, and thus its relative importance to conservation planning. The functional‐trait ecology of the plateau pika Ochotona curzoniae is examined to better understand the resilience and sustainability of the high alpine grasslands of the Qinghai–Tibetan Plateau (QTP). The key functional traits of plateau pikas are their abundance and behavior of digging extensive burrow systems. Plateau pikas have been poisoned over a significant part of their original geographic distribution across the QTP, allowing comparison of ecological communities with and without pikas. Nearly all mammalian and avian carnivores, most of which are obligate predators on pikas, have been lost in regions where pikas have been poisoned. Most endemic birds on the QTP nest in pika burrows; when pikas are poisoned, burrows collapse, and these birds are greatly reduced in number. Due to the biopedturbation resulting from their burrows, regional plant species richness is higher in areas with pikas than without. The presence of pika burrows allows higher rates of infiltration during heavy monsoon rains compared to poisoned areas, possibly mitigating runoff and the potential for serious downslope erosion and flooding. Thus, the functional traits of plateau pikas enhance native biodiversity and other important ecosystem functions; these traits are irreplaceable. As plateau pikas are not natural colonizers, active re‐introduction programs are needed to restore pikas to areas from which they have been poisoned to restore the important functional ecological traits of pikas.     

Traditional llama husbandry and breeding management in the Ayopaya region,Bolivia

The llama claims the largest population of the domestic South American camelids, most of which are raised in Bolivia. More than 53,000 rural families are dedicated to llama husbandry as part of their livelihood strategy. Contemporary Andean societies deliberately select animals for specific traits and employ substantial livestock management to secure subsistence. This study presents traditional llama husbandry and breeding management activities in the Ayopaya region, Bolivia. Traditional selection traits for male and female llamas are documented and assessed by a ranking and a ratio-scaled evaluation. Husbandry and management parameters are in concordance with other studies conducted in the region, but show a high variation. Average llama herd sizes are rather small (μ = 45.6). In some herds, breeding males are utilized for a long time and mix with other herds, causing concerns about inbreeding. Preferred trait groups for llama males according to farmers’ responses were body conformation, fibre, testicle conformation, fleece colour and height at withers. Traditional selection criteria generally relate to the phenotype, but also include the commercially interesting fibre trait. The presented results should be considered in breeding and management programmes for the respective llama population to ensure sustainable use of this genetically and culturally valuable resource.     

Genetics of resistance to mastitis in dairy cattle

Genetic variability of mastitis resistance is well established in dairy cattle. Many studies focused on polygenic variation of the trait, by estimating heritabilities and genetic correlation among phenotypic traits related to mastitis such as somatic cell counts and clinical cases. The role of Major Histocompatibility Complex in the susceptibility or resistance to intrammamary infection is also well documented. Finally, development from molecular genome mapping led to accumulating information of quantitative trait loci (QTL) related to mastitis resistance and better understanding of the genetic determinism of the trait. From economic and genetic analyses, and according to welfare and food safety considerations and to breeders and consumer's concern, there is more and more evidence that mastitis should be included in breeding objective of dairy cattle breeds. Many countries have implemented selection for mastitis resistance based on linear decrease of somatic cell counts. Given biological questioning, potential unfavourable consequences for very low cell counts cows are regularly investigated. Improvement of selection accuracy for mastitis resistance is ongoing and includes: advances in modelling, optimal combination of mastitis related traits and associated predictors, such as udder morphology, definition of global breeding objective including production and functional traits, and inclusion of molecular information that is now available from QTL experiments.     

株型形成及牧草株型相关研究进展

牧草育种工作是草牧业可持续发展的重要基础,目前除了应用传统育种的方法外,应用分子育种方法也取得一些突破性进展,特别是在抗逆性分子育种研究上取得了一定的实际性成果。株型是综合的农艺性状,是影响植物群体结构及产量形成的重要性状。现在株型在一年生作物株型分子机理及调控网络等方面已进行了深入系统的研究,而对于牧草株型调控机理研究颇少,大多研究是在与产量相关性状及其基础性分子育种等方面。针对影响植物株型形成因素及其机理进行了归纳总结,并对牧草株型性状相关研究进展进行了综述,最后简要评述了当前在牧草株型育种研究上所存在的关键问题,提出了相关建议,并指出可借鉴作物株型育种前沿研究方向制定牧草株型育种的研究策略。