Capacity of fatty acid profiles and substrate utilization patterns to describe differences in soil microbial communities associated with increased salinity or alkalinity at three locations in South Australia

 Fatty acid methyl ester (FAME) profiles, together with Biolog substrate utilization patterns, were used in conjunction with measurements of other soil chemical and microbiological properties to describe differences in soil microbial communities induced by increased salinity and alkalinity in grass/legume pastures at three sites in SE South Australia. Total ester-linked FAMEs (EL-FAMEs) and phospholipid-linked FAMEs (PL-FAMEs), were also compared for their ability to detect differences between the soil microbial communities. The level of salinity and alkalinity in affected areas of the pastures showed seasonal variation, being greater in summer than in winter. At the time of sampling for the chemical and microbiological measurements (winter) only the affected soil at site 1 was significantly saline. The affected soils at all three sites had lower organic C and total N concentrations than the corresponding non-affected soils. At site 1 microbial biomass, CO₂-C respiration and the rate of cellulose decomposition was also lower in the affected soil compared to the non-affected soil. Biomarker fatty acids present in both the EL- and PL-FAME profiles indicated a lower ratio of fungal to bacterial fatty acids in the saline affected soil at site 1. Analysis of Biolog substrate utilization patterns indicated that the bacterial community in the affected soil at site 1 utilized fewer carbon substrates and had lower functional diversity than the corresponding community in the non-affected soil. In contrast, increased alkalinity, of major importance at sites 2 and 3, had no effect on microbial biomass, the rate of cellulose decomposition or functional diversity but was associated with significant differences in the relative amounts of several fatty acids in the PL-FAME profiles indicative of a shift towards a bacterial dominated community. Despite differences in the number and relative amounts of fatty acids detected, principal component analysis of the EL- and PL-FAME profiles were equally capable of separating the affected and non-affected soils at all three sites. Redundancy analysis of the FAME data showed that organic C, microbial biomass, electrical conductivity and bicarbonate-extractable P were significantly correlated with variation in the EL-FAME profiles, whereas pH, electrical conductivity, NH₄-N, CO₂-C respiration and the microbial quotient were significantly correlated with variation in the PL-FAME profiles. Redundancy analysis of the Biolog data indicated that cation exchange capacity and bicarbonate-extractable K were significantly correlated with the variation in Biolog substrate utilization patterns. Received: 8 March 2000     

Seasonal, soil type, and alternative management influences on microbial communities of vegetable cropping systems

Microbial community responses to alternative management may be indicative of soil quality change. In this study, soils were collected from research plots over 2 years and from commercial grower fields over 1 year. Treatments at the sites included 1-9 years of either winter cover cropping or winter fallow practices. Soils were assayed for microbial fatty acid methyl esters (FAMEs), direct count microscopy and Biolog substrate utilization potentials to assess management and environmental influences on soil communities. The strongest influence was season. Soils in early spring (prior to termination of the cover crop) utilized fewer carboxylic acids and generally were enriched in eukaryotic FAMEs, whereas proportionally more bacterial FAMEs were detected in soils at canopy closure and harvest of the summer vegetable crop. Within a season, community FAME and Biolog patterns were related to field properties. FAME profiles from grower fields in early spring and harvest were correlated significantly with soil texture, cation exchange capacity, and carbon content. Changes in community structure and Biolog potential occurred in some soils in response to winter cover crops, although effects were not observed until cover crop incorporation. Greater amounts of fungal and protozoan FAME markers were detected in some cover-cropped soils compared to winter fallow soils. Cover crop residues increased FAME diversity at one research station and Biolog diversity at two research stations and the grower fields. Although seasonal and field-dependent factors are major determinants of microbial community structure, shifts can occur as soil physical and chemical properties change in response to alternative practices, as demonstrated by this study.     

Effects of long-term sewage irrigation on agricultural soil microbial structural and functional characterizations in Shandong,China

Soil samples taken from a sewage irrigation area, a partial sewage irrigation area and a ground water irrigation area (control area) were studied with the methods of Biolog and FAME. It was found that the microbial utilization of carbon sources in sewage irrigation areas was much higher than that of control area (P < 0.05). With the increasing of the amount of sewage irrigation, microbial functional diversity slightly increased by the Biolog analysis; however, the amount of epiphyte decreased by the FAME analysis. The results also showed that the Cr, Zn contents were positively correlated with the values of AWCD and the microbial diversity, while Hg content showed negative correlation with the microbial parameters (AWCD of 72 h and Shannon index). Our studies suggested that sewage irrigation resulted in an obvious increase of heavy metals content in soil (P < 0.05), although the maximum heavy metals concentrations were much lower than the current standard of China. Other soil basic characteristics such as cation exchange capacity (CEC), total nitrogen (N_t) and organic matter in sewage irrigation areas obviously increased (P < 0.05). Therefore, it is demonstrated that long-term sewage irrigation had influenced soil microorganisms and soil quality in the studied soils. As a result, it is important to monitor the changes in agricultural soils. Furthermore, our results also confirmed that the methods of Biolog and FAME are effective tools for the assessment of soil microbial structure/function and soil health.     

The fungicides thiram and captan affect the phenotypic characteristics of Rhizobium leguminosarum strain C1 as determined by FAME and Biolog analyses

 We assessed the effects of the fungicides captan and thiram on the survival and phenotypic characteristics of Rhizobium leguminosarum bv. viceae, strain C1. Fungicide was applied to pea seed at rates of 0.25–2 g a.i. kg^–1 seed, and treated seed was inoculated with strain C1. After 24 h, rhizobia were extracted from treated seed and viable numbers determined by plating onto yeast extract mannitol agar. Phenotypic characteristics were assessed using FAME (fatty acid methyl ester) profiles and Biolog substrate utilization patterns. Captan and thiram significantly reduced the numbers of rhizobia recovered from seed and altered the FAME and Biolog profiles of recovered rhizobia. However, only the highest concentrations of captan affected nodulation and plant growth. Contact with some seed-applied fungicides can significantly alter phenotypic characteristics of rhizobia, but these changes might be offset by the presence of host plants. Received: 20 February 1999     

Investigating microbial community structure in soils by physiological, biochemical and molecular fingerprinting methods

Several biochemical and molecular methods are used to investigate the microbial diversity and changes in microbial community structure in rhizospheres and bulk soils resulting from changes in management. We have compared the effects of plants on the microbial community, using several methods, in three different types of soils. Pots containing soil from three contrasting sites were planted with Lolium perenne (rye grass). Physiological (Biolog), biochemical (PLFA) and molecular (DGGE and TRFLP) fingerprinting methods were employed to study the change in soil microbial communities caused by the growth of rye grass. Different methods of DNA extraction and nested PCR on TRFLP profiles were examined to investigate whether they gave different views of community structure. Molecular methods were used for both fungal and bacterial diversity. Principal component analysis of Biolog data suggested a significant effect of the plants on the microbial community structure. We found significant effects of both soil type and plants on microbial communities in PLFA data. Data from TRFLP of soil bacterial communities showed large effects of soil type and smaller but significant effects of plants. Effects of plant growth on soil fungal communities were measured by TRFLP and DGGE. Multiple Procrustes analysis suggested that both methods gave similar results, with only soil types having a significant effect on fungal communities. However, TRFLP was more discriminatory as it generated more ribotype fragments for each sample than the number of bands detected by DGGE. Neither methods of DNA extraction nor the nested PCR had any effect on the evaluation of soil microbial community structure. In conclusion, the different methods of microbial fingerprinting gave qualitatively similar results when samples were processed consistently and compatible statistical methods used. However, the molecular methods were more discriminatory than the physiological and biochemical approaches. We believe results obtained from this experiment will have a major impact on soil microbial ecology in general and rhizosphere–microbial interaction studies in particular, as we showed that the different fingerprinting methods for microbial communities gave qualitatively similar results.     

Effect of swine and dairy manure amendments on microbial communities in three soils as influenced by environmental conditions

Understanding the impacts of manure amendments on soil microorganisms can provide valuable insight into nutrient availability and potential crop and environmental effects. Soil microbial community characteristics, including microbial populations and activity, substrate utilization (SU) profiles, and fatty acid methyl ester (FAME) profiles, were compared in three soils amended or not amended with dairy or swine manure at two temperatures (18 and 25°C) and two soil water regimes (constant and fluctuating) in laboratory incubation assays. Soil type was the dominant factor determining microbial community characteristics, resulting in distinct differences among all three soil types and some differing effects of manure amendments. Both dairy and swine manures generally increased bacterial populations, substrate diversity, and FAME biomarkers for gram-negative organisms in all soils. Microbial activity was increased by both manures in an Illinois soil but only by dairy manure in two Maine soils. Dairy manure had greater effects than swine manure on SU and FAME parameters such as increased activity, utilization of carbohydrates and amino acids, substrate richness and diversity, and fungal FAME biomarkers. Temperature and water regime effects were relatively minor compared with soil type and amendment, but both significantly affected some microbial responses to manure amendments. Overall, microbial characteristics were more highly correlated with soil physical factors and soil and amendment C content than with N levels. These results indicate the importance of soil type, developmental history, and environmental factors on microbial community characteristics, which may effect nutrient availability from manure amendments and should be considered in amendment evaluations.Mention of trade names or commercial products in this article is solely for the purpose of providing specific information and does not imply recommendation or endorsement by the US Department of Agriculture     

Artificial neural network modeling of microbial community structures in the Atlantic Forest of Brazil

Microbial communities vary across the landscape in forest soils, but prediction of their biomass and composition is a difficult challenge due to the large numbers of variables that influence their community structures. Here we examine the use of artificial neural network (ANN) models for extraction of patterns among soil chemical variables and microbial community structures in forest soils from three regions of the Atlantic Forest of Brazil. At each location, variations in soil chemical properties and FAME profiles of microbial community structures were mapped at 20 × 20 m intervals within 10 ha parcels. Geostatistical analyses showed that spatial variability in soil physical and chemical variables could be mapped at scale distances of 20 m, but that FAME profiles representing the microbial communities were highly variable and had no spatial dependence at the same scale in most cases. RDA analysis showed that FAME signatures representing different microbial groups were positively associated with soil pH, OM, P and base cations concentrations, whereas microbial biomass was negatively associated with the same environmental factors. In contrast, ANN models revealed clear relationships between microbial community structures at each parcel location, and generated verifiable predictions of variations in FAME profiles in relation to soil pH, texture, and the relative abundances of base cations. The results suggest that ANN modeling provides a useful approach for describing the relationships between microbial community structures and soil properties in tropical forest soils that were not able to be captured using geostatistical and RDA analyses.     

Changes in microbial communities in an apple orchard and its adjacent bush soil in response to season,land-use,and violet root rot infestation

Soil microbial communities in an apple orchard and its adjacent boundary bush with or without infestation by violet root rot were investigated for 2 years. Effects of season (spring, summer, and fall), land-use (apple orchard and boundary bush), and violet root rot (infested and healthy) on soil microbial populations, microbial activity, and microbial community structures were determined using physiological, cytochemical, and molecular (PCR-DGGE) approaches. Seasonal fluctuations were significant (P<0.05) in viable bacteria and fungal populations, bacterial FAME, fluorescein diacetate (FDA) hydrolysis, and diversity (H′) and evenness (J′) of community-level physiological profile (CLPP) in both years. However, seasonal differences of soil microbial guilds that utilize carbon substrate groups observed in the first year were not reproduced in the second year. The land-use factor differentiated the apple orchard from the boundary bush where viable bacterial population, bacterial FAME and FDA hydrolysis were significantly greater in both years. Infestation status of violet root rot, on the other hand, significantly increased bacterial FAME and FDA hydrolysis in both years. In addition, neither the land-use nor the disease infestation factor significantly influenced the utilization patterns of individual substrate guilds for the 2 years. In both years, saturated fatty acids were significantly more abundant in the orchard than in the bush soil, and monosaturated fatty acids vice versa. Principal component analyses for CLPP, FAME, and denaturing gradient gel electrophoresis (DGGE) consistently exhibited that, although the violet root rot influenced the soil microbial community structures both in the apple orchard and the boundary bush, overall magnitude of the difference in communities between the violet root rot infested and non-infested sites in the bush were greater than in the orchard, irrespective of the season. These results suggested that the seasonal and the land-use factors affected soil microbial community both quantitatively and qualitatively, whereas the impact of the violet root rot on the soil microbial community was mainly qualitative and more pronounced in the adjacent bush than in the orchard.     

Characterization of rhizosphere microbial community structure in five similar grass species using FAME and BIOLOG analyses

Accelerated biodegradation of organic contaminants in planted soil is frequently reported yet our current understanding of plant–microbe interactions does not allow us to predict which plant species can encourage the development of rhizosphere communities with enhanced degradation capacity. In a companion study, five grass species (Sudan grass, ryegrass, tall fescue, crested wheatgrass, and switch grass) were grown in a Matapeake silt loam soil to study the degradation of atrazine and phenanthrene by rhizosphere microorganisms (see Fang et al., 2000, this vol., Fang, C., Radosevich, M., Fuhrmann, J. J., 2000. Atrizine and phenanthrene degradation in grass rhizosphere soil. Soil Biology & Biochemistry, in press). In the present paper substrate utilization patterns (BIOLOG^®), and fatty acid methyl ester (FAME) profiles of the same rhizosphere microbial communities were determined. Both FAME and BIOLOG^® analyses detected changes in soil microbial community structure among treatments. However, community structure did not directly correlate to either ATR or PHE degradation rates.     

Long-term impacts of infrequent biosolids applications on chemical and microbial properties of a semi-arid rangeland soil

A plot study was conducted to quantify long-term (>12 years) impacts of a single biosolids application, and short-term impacts (<2 years) of a repeated application, on semi-arid rangeland soil chemical and microbial parameters. In 2003 and 2004, plots which had received 0, 2.5, 5, 10, 21, or 30 Mg biosolids ha⁻¹ once in 1991 (long-term plots), or again in 2002 (short-term plots), were sampled and analyzed for soil chemical parameters, microbial biovolumes, C and N mineralization activities, Biolog EcoPlate substrate utilization potential, and plant productivity and tissue quality. Repeated applications temporarily exacerbated differences in soil chemical properties among treatments, but after 2 years, soil chemistry trends were similar between short-term and long-term plots. Soils which received a repeated application of 21 or 30 Mg biosolids ha⁻¹ had greater bacterial biovolumes and C and N mineralization activities. In long-term plots, mineralization activities were stimulated only at the highest rate. Biosolids-amended soil communities also utilized Biolog substrates more quickly compared to communities from control plots. Plant biomass increased, whereas plant diversity and plant C/N ratio decreased with increasing application rate for both short- and long-term plots. Infrequent biosolids application had positive ecosystem effects in terms of site management objectives, with relatively low extractable metal levels in soil and greater plant biomass and tissue quality despite reduced species richness.     

Effect of Colletia hystrix (Clos), a pioneer actinorhizal plant from the Chilean matorral, on the genetic and potential metabolic diversity of the soil bacterial community

Colletia hystrix are dominant shrubs in the sclerophyllous matorral, a natural ecosystem in the central valley of Chile affected by erosion, soil with low fertility and limiting nitrogen. The soil microbial communities associated to these pioneer plants have received little attention even though they may have an important role in the ability of these to colonize the nutrient-poor soils from these semi-arid ecosystems. T-RFLP profiles using 16S rDNA were used to compare the bacterial community structure from soil samples (enriched and unenriched) associated to C. hystrix and neighboring soil without plant cover (bulk soil). Additionally, the microbial communities from both habitats were compared at the metabolic profile level using the Biolog EcoPlate™ system. Our results showed that the bacterial community from samples of soil associated to these plants formed a separate cluster from samples derived from the neighboring soil. These data suggest that soil associated to C. hystrix is a different microhabitat to bulk soil. When an enrichment step was performed on the samples, the T-RFLP profiles obtained showed few T-RFs suggesting that only some species were recovered. The enriched samples exhibited a low similarity between them and are clearly separated from the unenriched samples. On the other hand, the comparison of the unenriched samples from both habitats based on sole-carbon-source utilization profiles was unable to differentiate the samples according to their habitat.     

废弃农耕地自然演替过程中微生物群落与土壤特性间的关系

The changes of microbial biomass carbon (MBC) and nitrogen (MBN) and microbial community in the topsoil of the abandoned agricultural land on the semi-arid Loess Plateau in China during the natural succession were evaluated to understand the relationship between microbial community and soil properties. MBC and MBN were measured using fumigation extraction, and microbial community was analyzed by the method of fatty acid methyl ester (FAME). The contents of organic C, total N, MBC, MBN, total FAME, fungal FAME, bacterial FAME and Gram-negative bacterial FAME at the natural succession sites were higher than those of the agricultural land, but lower than those of the natural vegetation sites. The MBC, MBN and total FAME were closely correlated with organic C and total N. Furthermore, organic C and total N were found to be positively correlated with fungal FAME, bacterial FAME, fungal/bacterial and Gram-negative bacterial FAME. Natural succession would be useful for improving soil microbial properties and might be an important alternative for sustaining soil quality on the semi-arid Loess Plateau in China.     

Soil Microbial Community Diversity and Its Relationships with Geochemical Elements under different Farmlands in Shouguang,China

The aims of this study were to investigate soil microbial community characteristics and their interrelationships with soil geochemistry under different farmlands in Shouguang, China. The traditional dilution plate counts, BIOLOG system, and fatty acid methyl ester (FAME) analyses were used to assess microbial populations, substrate utilization, and fatty acid profiles. The number of aerobic heterotrophic bacteria varied significantly among untilled land, maize, and mungbean fields. The amounts of actinomycetes, fungal fatty acids, and Gram-positive/Gram-negative bacteria ratios varied greatly among celery, tomato, and aubergine fields. In the tomato field, the soil microbial community characteristics were significantly different from other fields. Principal component analysis of BIOLOG and FAME data revealed differences in the catabolic capability and fatty acid profiles of soil microbial communities among different farmlands. Spearman correlation analyses showed that in these sand clay soils of Shouguang, microbial communities in different farmlands were closely correlated with soil geochemical elements, moisture, and organic matter.     

Long term tillage,cover crop,and fertilization effects on microbial community structure,activity: Implications for soil quality

Conservation agriculture practices, such as reduced tillage, cover crops and fertilization, are often associated with greater microbial biomass and activity that are linked to improvements in soil quality. This study characterized the impact of long term (31 years) tillage (till and no-till), cover crops (Hairy vetch- Vicia villosa and winter wheat- Triticum aestivum, and a no cover control), and N-rates (0, 34, 67 and 101 kg N ha⁻¹) on soil microbial community structure, activity and resultant soil quality calculated using the soil management assessment framework (SMAF) scoring index under continuous cotton (Gossypium hirsutum) production on a Lexington silt loam in West Tennessee.No-till treatments were characterized by a significantly greater (P < 0.05) abundance of Gram positive bacteria, actinomycetes and mycorrhizae fungi fatty acid methyl ester (FAME) biomarkers compared to till. Saprophytic fungal FAME biomarkers were significantly less abundant (P < 0.05) under no-till treatments resulting in a lower fungi to bacteria (F:B) ratio. Key enzymes associated with C, N & P cycling (β-glucosidase, β-glucosaminidase, and phosphodiesterase) had significantly higher rates under no-till relative to till, corresponding to significantly greater (P < 0.05) soil C and N, extractable nutrients (P, K and Ca) and yields. Mycorrhizae fungi biomarkers significantly decreased (P < 0.05) with increasing N-rate and was significantly less (P < 0.05) under the vetch cover crop compared to wheat and no cover. Treatments under vetch also had significantly higher β-glucosaminidase and basal microbial respiration rates compared to wheat and no cover.Consequently, the total organic carbon (TOC) and β-glucosidase SMAF quality scores were significantly greater under no-till compared to till and under the vetch compared to wheat and no cover treatments, resulting in a significantly greater overall soil quality index (SQI).Our results demonstrate that long-term no-till and use of cover crops under a low biomass monoculture crop production system like cotton results in significant shifts in the microbial community structure, activity, and conditions that favor C, N and P cycling compared to those under conventional tillage practices. These practices also led to increased yields and improved soil quality with no-till having 13% greater yields than till and treatments under vetch having 5% increase in soil quality compared to no cover and wheat.     

Influence of Metal Nanoparticles on the Soil Microbial Community and Germination of Lettuce Seeds

Short term influence of silica, palladium, gold and copper nanoparticles on a soil microbial community and the germination of lettuce seeds are investigated in this study at two different concentrations of nanoparticles. Results show a statistically insignificant influence of the nanoparticles in the soil on the number of colony forming units, peak areas of methyl ester of fatty acids in the FAME profile or on the total soil community metabolic fingerprint (P?>?0.05). Also, all nanoparticles tested in the study influenced the growth of lettuce seeds as measured through shoot/root ratios of the germinated plant (P?<?0.05).     

Microbial community structure and function: The effect of silvicultural burning and topographic variability in northern Alberta

Forest floor chemistry and microbial communities can be influenced by forest land management, such as harvesting and prescribed burning. Here, we used phospholipid fatty acid (PLFA) and multiple carbon-source substrate-induced respiration (MSIR) analyses to characterize microbial communities of deciduous, mixedwood and coniferous boreal forest floors with different silvicultural treatments. The sites were stem-only harvested with 10% retention, and silvicultural treatments consisting of slash being evenly distributed on the site and then burned, or not burned. The burned sites exhibited lower microbial biomass and greater NO₃⁻ concentrations than the unburned sites. However, burning appeared to have no effect on forest floor microbial community structure or function. On the other hand, during drier months (August sampling), the composition of forest floor microbial communities appeared to be strongly influenced by topographic position rather than stand related differences. Harvested sites located at higher elevations had similar microbial communities, regardless of the overstory composition, while coniferous and mixedwood sites located at lower elevations had similarly structured microbial communities that were distinct from deciduous sites. Differences in microclimatic conditions of the forest floor between higher elevation sites and lower elevations sites may select for some microbial groups over others. Indicator analysis found a strong association of a fungal PLFA biomarker (20:1ω9c), with sites at higher elevation, while a biomarker for actinomycetes (10Me19:0) was strongly associated with deciduous sites at lower elevation. Structural differences in microbial communities observed between sites at higher and lower elevations appear to be linked to seasonal patterns in moisture, as previous studies in this region found no apparent effect of elevation during times of higher monthly precipitation.     

Functional Diversity and Size of Soil Microbial Communities Induced by Different Land Management Systems

Abstract

Soil microorganisms drive nutrients cycling to a great extent, and they play an essential role in maintaining a stable soil ecosystem and ensuring sustainable forestry development. Land management has been proven to be a real factor in influencing soil quality. The purpose of this study was to investigate the effects of different land management techniques on soil microbial communities. There were four types of land management systems selected for this study: natural masson pine, Phyllostachy pubescens, Phyllostachys praecox, and vegetable. Soils were sampled from these four systems and assayed for soil microbial biomass carbon (MBC), community level substrate utilization pattern, functional diversity, and principle component analysis. Values of MBC were significantly different (P<0.05) from one another in the order of masson pine>Phyllostachy pubescens>Phyllostachys Praecox>vegetable. Analysis of community level substrate utilization pattern indicated that carbon source utilization and total activity by soil microorganisms were greater under the masson pine system than the other three systems (P<0.01). The functional diversities of soil microbial communities characterized as Shannon and McIntosh indexes were much richer in soil under masson pine system; Shannon index was 4.483, 4.241, 4.224, and 3.938 and McIntosh index was 13.51, 7.332, 6.272, and 6.261 for natural masson pine, Phyllostachy pubescens. Phyllostachys praecox, and vegetable systems, respectively. The results from the principle components analysis (PCA), based on the data of optical density (OD) at 120 h of incubation, showed that the value of the first principal component (PC1) of soil for natural masson pine was greater (P<0.05) than those for the other three systems. The difference in scores of the second principal component (PC2) between Phyllostachy pubescens, Phyllostachys praecox, and vegetable were not statistically different. The size and activity of soil microbial communities generally decreased with soil depth, with significant differences in soil MBC, community level substrate utilization pattern, and functional diversity indexes found between A and C horizons (P<0.01). It was concluded that land management systems had a great influence on soil microbial biomass, activity, and functional diversity.     

Effects of subsurface aeration and trinexapac-ethyl application on soil microbial communities in a creeping bentgrass putting green

The sensitivity of creeping bentgrass (Agrostis palustris Huds.) to the extreme heat found in the southeastern United States has led to the development of new greens-management methods. The purpose of this study was to examine the effects of subsurface aeration and growth regulator applications on soil microbial communities and mycorrhizal colonization rates in a creeping bentgrass putting green. Two cultivars (Crenshaw and Penncross), a growth regulator (trinexapac-ethyl), and subsurface aeration were evaluated in cool and warm seasons. Total bacterial counts were higher in whole (unsieved) soils than in sieved soils, indicating a richer rhizosphere soil environment. Mycorrhizal infection rates were higher in trinexapac-ethyl (TE) treated plants. High levels of hyphal colonization and relatively low arbuscule and vesicle occurrence were observed. Principal components analysis of whole-soil fatty acid methyl ester (FAME) profiles indicated that warm-season microbial populations in whole and sieved soils had similar constituents, but the populations differed in the cool season. FAME profiles did not indicate that subsurface aeration and TE application affected soil microbial community structure. This is the first reported study investigating the influences of subsurface aeration and TE application on soil microorganisms in a turfgrass putting green soil.     

Changes in microbial community metabolism and labile organic matter fractions as early indicators of the impact of management on soil biological quality

 Changes to the metabolic profiles of soil microbial communities could have potential for use as early indicators of the impact of management or other perturbations on soil functioning and soil quality. We compared the relative susceptibility to management of microbial community metabolism with a number of soil organic matter (OM) and microbial parameters currently used as indicators of changes in soil biological quality. Following long-term cereal cropping, plots were subjected to a 16-month treatment period consisting of either a mixed cropping sequence of vetch, spring barley and clover or a continuous grass-clover ley which was periodically mown and mulched. The treatments had no effect on soil biomass N or respiration of microbial populations inoculated into Biolog Gram negative (GN) plates. After 16 months there were no management-induced changes to total OM, light-fraction OM C and N, labile organic N or water-soluble carbohydrates. However, patterns of substrate utilization by the soil microbial population following inoculation into Biolog GN plates were found to be highly sensitive to management practice. In the mixed cropping sequence, substrate utilization changed markedly following plough-in of the vetch crop, with a smaller change occurring after harvesting of the barley. In the ley treatment, substrate utilization was not affected until the onset of mowing, when the pattern changed to become similar to that in the mixed cropping sequence. Metabolic diversity of the Biolog-culturable microbial population was increased by the ley treatment, but was not affected by the cropping sequence. We conclude that patterns of microbial substrate utilization and metabolic diversity are more sensitive to the effects of management than are OM and biomass pools, and therefore have value as early indicators of the impacts of management on soil biological properties, and hence soil quality. Received: 7 April 1999     

Microbial community composition and substrate use in a highly weathered soil as affected by crop rotation and P fertilization

A better understanding of soil microbial processes is required to improve the synchrony between nutrient release from plant residues and crop demand. Phospholipid fatty acid analysis was used to investigate the effect of two crop rotations (continuous maize and maize-crotalaria rotation) and P fertilization (0 and 50 kg P ha⁻¹ yr⁻¹, applied as triple superphosphate) on microbial community composition in a highly weathered soil from western Kenya. Microbial substrate use in soils from the field experiment was compared in incubation experiments. Higher levels of soil organic matter and microbial biomass in the maize-crotalaria rotation were connected with higher total amounts of phospholipid fatty acids and an increase in the relative abundances of indicators for fungi and gram-negative bacteria. P fertilization changed the community profile only within the continuous maize treatment. The decomposition of glucose, cellulose and three plant residues (all added at 2.5 g C kg⁻¹ soil) proceeded faster in soil from the maize-crotalaria rotation, but differences were mostly transient. Microbial P and N uptake within one week increased with the water-soluble carbon content of added plant residues. More P and N were taken up by the greater microbial biomass in soil from the maize-crotalaria rotation than from continuous maize. Re-mineralization of nutrients during the decline of the microbial biomass increased also with the initial biological activity of the soil, but occurred only for a high quality plant residue within the half year incubation period. Compared to the effect of crop rotation, P fertilization had a minor effect on microbial community composition and substrate use.