Influence of mouldboard plough and rotary harrow tillage on microbial biomass and nutrient stocks in two long-term experiments on loess derived Luvisols

The nutrient-specific effects of tillage on microbial activity (basal respiration), microbial biomass (C, N, P, S) indices and the fungal cell-membrane component ergosterol were examined in two long-term experiments on loess derived Luvisols. A mouldboard plough (30 cm tillage depth) treatment was compared with a rotary harrow (8 cm tillage depth) treatment over a period of approximately 40 years. The rotary harrow treatment led to a significant 8% increase in the mean stocks of soil organic C, 6% of total N and 4% of total P at 0–30 cm depth compared with the plough treatment, but had no main effect on the stocks of total S. The tillage effects were identical at both sites, but the differences between the sites of the two experiments were usually stronger than those between the two tillage treatments. The rotary harrow treatment led to a significant increase in the mean stocks of microbial biomass C (+18%), N (+25%), and P (+32%) and to a significant decrease in the stocks of ergosterol (−26%) at 0–30 cm depth, but had no main effect on the stocks of microbial biomass S or on the mean basal respiration rate. The mean microbial biomass C/N (6.4) and C/P (25) ratios were not affected by the tillage treatments. In contrast, the microbial biomass C/S ratio was significantly increased from 34 to 43 and the ergosterol-to-microbial biomass C ratio significantly decreased from 0.20% to 0.13% in the rotary harrow in comparison with the plough treatment. The microbial biomass C-to-soil organic C ratio varied around 2.1% in the plough treatment and declined from 2.6% at 0–10 cm depth to 2.0 at 20–30 cm depth in the rotary harrow treatment. The metabolic quotient qCO₂ revealed exactly the inverse relationships with depth and treatment to the microbial biomass C-to-soil organic C ratio. Rotary harrow management caused a reduction in the microbial turnover in combination with an improved microbial substrate use efficiency and a lower contribution of saprotrophic fungi to the soil microbial community. This contrasts the view reported elsewhere and points to the need for more information on tillage-induced shifts within the fungal community in arable soils.     

Soil enzyme activities,microbial community composition and function after 47 years of continuous green manuring

Green manuring practices can influence soil microbial community composition and function and there is a need to investigate the influence compared with other types of organic amendment. This study reports long-term effects of green manure amendments on soil microbial properties, based on a field experiment started in 1956. In the experiment, various organic amendments, including green manure, have been applied at a rate of 4 t C ha⁻¹ every second year. Phospholipid fatty acid analysis (PLFA) indicated that the biomass of bacteria, fungi and total microbial biomass, but not arbuscular mycorrhizal (AM) fungi, generally increased due to green manuring compared with soils receiving no organic amendments. Some differences in abundance of different microbial groups were also found compared with other organic amendments (farmyard manure and sawdust) such as a higher fungal biomass and consequently a higher fungal/bacterial ratio compared with amendment with farmyard manure. The microbial community composition (PLFA profile) in the green manure treatment differed from the other treatments, but there was no effect on microbial substrate-utilization potential, determined using the Biolog EcoPlate. Protease and arylsulphatase activities in the green manure treatment were comparable to a mineral fertilized treatment receiving no additional C, whereas acid phosphatase activity increased. It can be concluded that green manuring had a beneficial impact on soil microbial properties, but differed in some aspects to other organic amendments which might be attributed to differences in quality of the amendments.     

Animal manure and anhydrous ammonia amendment alter microbial carbon use efficiency,microbial biomass,and activities of dehydrogenase and amidohydrolases in semiarid agroecosystems

The potential negative impact of agricultural practices on soil and water quality is of environmental concern. The associated nutrient transformations and movements that lead to environmental concerns are inseparable from microbial and biochemical activities. Therefore, biochemical and microbiological parameters directing nitrogen (N) transformations in soils amended with different animal manures or inorganic N fertilizers were investigated. Soils under continuous corn cultivation were treated with N annually for 5 years at 56, 168, and 504 kg N ha⁻¹ in the form of swine effluent, beef manure, or anhydrous ammonia. Animal manure treatments increased dehydrogenase activity, microbial biomass carbon (C_mic) and N (N_mic) contents, and activities of amidohydrolases, including l-asparaginase, urease, l-glutaminase, amidase, and β-glucosaminidase. Soils receiving anhydrous ammonia demonstrated increased nitrate contents, but reduced microbiological and biochemical activities. All treatments decreased C_mic:organic C (C_org) ratios compared with the control, indicating reduced microbial C use efficiency and disturbance of C equilibrium in these soil environments. Activities of all enzymes tested were significantly correlated with soil C_org contents (P < 0.001, n = 108), but little correlation (r = 0.03, n = 36) was detected between C_mic and C_org. Activities of amidase and β-glucosaminidase were dominated by accumulated enzymes that were free of microbial cells, while activities of asparaginase and glutaminase were originated predominately from intracellular enzymes. Results indicated that soil microbial and biochemical activities are sensitive indicators of processes involved in N flow and C use efficiency in semiarid agroecosystems.     

Influence of biological aggregating agents associated with microbial population on soil aggregate stability

In this study, we investigated the effects of plant residue decomposition and biological aggregating agents (microbial extracellular polysaccharides and fungal hyphae) on soil aggregate stability and determined the microbial population at different stages of soil aggregate stabilization. Experiments were conducted in a 40 days incubation period with the following six treatments: the control (soil only), soil + fungicide, soil + bactericide, soil + maize residues, soil + maize residues + fungicide, and soil + maize residues + bactericide. The maize residues treatments greatly enhanced the formation of macroaggregates. In the residue treatments, the addition of fungicide led to a significant suppression of fungal biomass and activity as well as a reduction of soil aggregate stability, which demonstrated the profound influence of fungal activity on aggregate formation. The addition of bactericide also significantly reduced soil aggregate stability, indicating that bacterial activity also played an important role in the macroaggregate formation. However, the effect of microbial extracellular polysaccharides on soil aggregate stability was not significant, which might be attributable to the fast wet sieving method used for aggregate separation. For the treatments of soil + residues and soil + residues + bactericide, the temporal variations of soil aggregate formation with two peak values suggested that other factors, such as hydrophobic compounds and phenolic acids, might be involved in the soil aggregate stabilization process.     

Influence of organic and mineral amendments on microbial soil properties and processes

Microbial diversity in soils is considered important for maintaining sustainability of agricultural production systems. However, the links between microbial diversity and ecosystem processes are not well understood. This study was designed to gain better understanding of the effects of short-term management practices on the microbial community and how changes in the microbial community affect key soil processes. The effects of different forms of nitrogen (N) on soil biology and N dynamics was determined in two soils with organic and conventional management histories that varied in soil microbial properties but had the same fertility. The soils were amended with equal amounts of N (100 kg ha⁻¹) in organic (lupin, Lupinus angustifolius L.) and mineral form (urea), respectively. Over a 91-day period, microbial biomass C and N, dehydrogenase enzyme activity, community structure of pseudomondas (sensu stricto), actinomycetes and α proteobacteria (by denaturing gradient gel electrophoresis (DGGE) following PCR amplification of 16S rDNA fragments) and N mineralisation were measured. Lupin amendment resulted in a two- to five-fold increase in microbial biomass and enzyme activity, while these parameters did not differ significantly between the urea and control treatments. The PCR–DGGE analysis showed that the addition of mineral and organic compounds had an influence on the microbial community composition in the short term (up to 10 days) but the effects were not sustained over the 91-day incubation period. Microbial community structure was strongly influenced by the presence or lack of substrate, while the type of amendment (organic or mineral) had an effect on microbial biomass size and activity. These findings show that the addition of green manures improved soil biology by increasing microbial biomass and activity irrespective of management history, that no direct relationship existed among microbial structure, enzyme activity and N mineralisation, and that microbial community structure (by PCR–DGGE) was more strongly influenced by inherent soil and environmental factors than by short-term management practices.     

Differences in soil enzyme activities,microbial community structure and short-term nitrogen mineralisation resulting from farm management history and organic matter amendments

Changes in soil microbial biomass, enzyme activities, microbial community structure and nitrogen (N) dynamics resulting from organic matter amendments were determined in soils with different management histories to gain better understanding of the effects of long- and short-term management practices on soil microbial properties and key soil processes. Two soils that had been under either long-term organic or conventional management and that varied in microbial biomass and enzyme activity levels but had similar fertility levels were amended with organic material (dried lupin residue, Lupinus angustifolius L.) at amounts equivalent to 0, 4 and 8 t dry matter lupin ha^?1. Microbial biomass C and N, arginine deaminase activity, fluorescein diacetate hydrolysis, dehydrogenase enzyme activity and gross N mineralisation were measured in intervals over an 81-day period. The community structure of eubacteria and actinomycetes was examined using PCR–DGGE of 16S rDNA fragments. Results suggested that no direct relationships existed between microbial community structure, enzyme activities and N mineralisation. Microbial biomass and activity changed as a result of lupin amendment whereas the microbial community structure was more strongly influenced by farm management history. The addition of 4 t ha^?1 of lupin was sufficient to stimulate the microbial community in both soils, resulting in microbial biomass growth and increased enzyme activities and N mineralisation regardless of past management. Amendment with 8 t lupin ha^?1 did not result in an increase proportional to the extra amount added; levels of soil microbial properties were only 1.1–1.7 times higher than in the 4 t ha^?1 treatment. Microbial community structure differed significantly between the two soils, while no changes were detected in response to lupin amendment at either level during the short-term incubation. Correlation analyses for each treatment separately, however, revealed differences that were inconsistent with results obtained for soil biological properties suggesting that differences might exist in the structure or physiological properties of a microbial component that was not assessed in this study.     

Phosphate additions have no effect on microbial biomass and activity in a northern hardwood forest

High rates of atmospheric nitrogen (N) deposition have raised questions about shifting patterns of nutrient limitation in northern hardwood forests. Of particular interest is the idea that increased supply of N may induce phosphorus (P) limitation of plant and microbial processes, especially in acid soils where P sorption by Al is high. In this study, we established field plots and plant-free laboratory mesocosms with P and Ca additions to test the hypotheses that 1) microbial biomass and activity are limited by P in the northern hardwood forest soils at the Hubbard Brook Experimental Forest in NH USA; 2) elevated Ca increases inherent P availability and therefore reduces any effects of added P and 3) P effects are more marked in the more carbon (C) rich Oie compared to the Oa horizon. Treatments included P addition (50 kg P ha⁻¹), Ca addition (850 kg Ca ha⁻¹) and Ca + P addition (850 kg Ca ha⁻¹ and 50 kg P ha⁻¹). The P treatments increased resin-available P levels and reduced phosphatase activity, but had no effect on microbial biomass C, microbial respiration, C metabolizing enzymes, potential net N mineralization and nitrification in the Oie or Oa horizon of either field plots or plant free mesocosms, in either the presence or absence of Ca. Total, prokaryote, and eukaryote PLFA were reduced by P addition, possibly due to reductions in mycorrhizal fungal biomass. These results suggest that increased N deposition and acidification have not created P limitation of microbial biomass and activity in these soils.     

Recovery of soil organic matter,organic matter turnover and nitrogen cycling in a post-mining forest rehabilitation chronosequence

Recovery of soil organic matter, organic matter turnover and mineral nutrient cycling is critical to the success of rehabilitation schemes following major ecosystem disturbance. We investigated successional changes in soil nutrient contents, microbial biomass and activity, C utilisation efficiency and N cycling dynamics in a chronosequence of seven ages (between 0 and 26 years old) of jarrah (Eucalyptus marginata) forest rehabilitation that had been previously mined for bauxite. Recovery was assessed by comparison of rehabilitation soils to non-mined jarrah forest references sites. Mining operations resulted in significant losses of soil total C and N, microbial biomass C and microbial quotients. Organic matter quantity recovered within the rehabilitation chronosequence soils to a level comparable to that of non-mined forest soil. Recovery of soil N was faster than soil C and recovery of microbial and soluble organic C and N fractions was faster than total soil C and N. The recovery of soil organic matter and changes to soil pH displayed distinct spatial heterogeneity due to the surface micro-topography (mounds and furrows) created by contour ripping of rehabilitation sites. Decreases in the metabolic quotient with rehabilitation age conformed to conceptual models of ecosystem energetics during succession but may have been more indicative of decreasing C availability than increased metabolic efficiency. Net ammonification and nitrification rates suggested that the low organic C environment in mound soils may favour autotrophic nitrifier populations, but the production of nitrate (NO₃^?) was limited by the low gross N ammonification rates (≤1 μg N g^?1 d^?1). Gross N transformation rates in furrow soils suggested that the capacity to immobilise N was closely coupled to the capacity to mineralise N, suggesting NO₃^? accumulation in situ is unlikely. The C:N ratio of the older rehabilitation soils was significantly lower than that of the non-mined forest soils. However, variation in ammonification rates was best explained by C and N quantity rather than C:N ratios of whole soil or soluble organic matter fractions. We conclude that the rehabilitated ecosystems are developing a conservative N cycle as displayed by non-mined jarrah forests. However, further investigation into the control of nitrification dynamics, particularly in the event of further ecosystem disturbance, is warranted.     

Evaluation of soil microbial indices along a revegetation chronosequence in grassland soils on the Loess Plateau,Northwest China

There is a growing interest in using soil microbial parameters as indicators of soil quality changes after revegetation of disturbed soils. This study investigated the changes in different soil microbial parameters as well as physico-chemical parameters as affected by vegetation rehabilitation of soil in the Loess plateau of China subjected to natural succession after enclosure. The results showed that the soil nutrients tend to be concentrated in the soil surface layer, especially the soil organic C, total N and alkali extractable N with soil organic C being doubled (up to 20 g kg⁻¹) after 50 years of revegetation. Soil enzyme activities and microbial biomass C (Cmic) and N (Nmic) increased with rehabilitation time up to 23 years. After 23 years, soil Cmic and Nmic and enzyme activities remained stable. Enzyme activities increased rapidly during the early stage of revegetation, about 15–20 years after enclosure. Soil Cmic and Nmic also increased about 20% faster up to 23 years since enclosure in the 0–20-cm soil layer. Soil basal respiration (BR) in the 23 years site was higher than in other sites, indicating high microbial activity in this site. These findings demonstrated significant impacts of natural vegetation succession in overgrazed grassland on the properties of the surface soils, including the soil nutrients, organic matter, soil microbial biomass, respiration, and enzyme activities.     

Soil microbial biomass and organic matter fractions during transition from conventional to organic farming systems

The aim of this study was to investigate the response of soil microbial biomass and organic matter fractions during the transition from conventional to organic farming in a tropical soil. Soil samples were collected from three different plots planted with Malpighia glaba: conventional plot with 10 years (CON); transitional plot with 2 years under organic farming system (TRA); organic plot with 5 years under organic farming system (ORG). A plot under native vegetation (NV) was used as a reference. Soil microbial biomass C (MBC) and N (MBN), soil organic carbon (SOC) and total N (TN), soil organic matter fractioning and microbial indices were evaluated in soil samples collected at 0–5, 5–10, 10–20 and 20–40 cm depth. SOC and fulvic acids fraction contents were higher in the ORG system at 0–5 cm and 5–10 cm depths. Soil MBC was highest in the ORG, in all depths, than in others plots. Soil MBN was similar between ORG, TRA and NV in the surface layer. The lowest values for soil MBC and MBN were observed in CON plot. Soil microbial biomass increased gradually from conventional to organic farming, leading to consistent and distinct differences from the conventional control by the end of the second year.     

The relationships among microbial parameters and the rate of organic matter mineralization in forest soils,as influenced by forest type

Vegetation type influences the rate of accumulation and mineralization of organic matter in forest soil, mainly through its effect on soil microorganisms. We investigated the relationships among forest types and microbial biomass C (MBC), basal respiration (R_B), substrate-induced respiration (R_S), N mineralization (N_min), specific growth rate μ, microbial eco-physiology and activities of seven hydrolytic enzymes, in samples taken from 25 stands on acidic soils and one stand on limestone, covering typical types of coniferous and deciduous forests in Central Europe. Soils under deciduous trees were less acidic than soils of coniferous forests, which led to increased mineralizing activities R_B and N_min, and a higher proportion of active microbial biomass (R_S/MBC) in the Of horizon. This resulted in more extractable organic C (0.5 M K₂SO₄) in soils of deciduous forests and a higher accumulation of soil organic matter (SOM) in coniferous forest soil. No effect of forest type on the microbial properties was detected in the Oh horizon and in the 0–10 cm layer. The microbial quotient (MBC/C_org), reflecting the quality of organic matter used for microbial growth, was higher in deciduous forests in all three layers. The metabolic quotient qCO₂ (R_B/MBC) and the specific growth rate μ, estimated using respiration growth curves, did not differ in soils of both forest types. Our results showed that the quality of SOM in coniferous forests supported microorganisms with higher activities of β-glucosidase, cellobiosidase and β-xylosidase, which suggested the key importance of fungi in these soils. Processes mediated by bacteria were probably more important in deciduous forest soils with higher activities of arylsulphatase and urease. The results from the stand on limestone showed that pH had a positive effect on microbial biomass and SOM mineralization.     

Effects of vegetation on soil microbial C,N, and P dynamics in a tropical forest and savanna of Central Africa

The forest–savanna transition zone is widely distributed on nutrient-poor oxisols in Central Africa. To reveal and compare the nutrient cycle in relation to soil microbes for forest and savanna vegetation in this area, we evaluated seasonal fluctuations in microbial biomass carbon (MBC), nitrogen (MBN), and phosphorus (MBP) for 13 months as well as soil moisture, temperature, soil pH levels, and nutrients for both vegetation types in eastern Cameroon. Soil pH was significantly lower in forest (4.3) than in savanna (5.6), and soil N availability was greater in forest (87.1 mg N kg⁻¹ soil) than in savanna (32.9 mg N kg⁻¹ soil). We found a significant positive correlation between soil moisture and MBP in forest, indicating the importance of organic P mineralization for MBP, whereas in savanna, we found a significant positive correlation between soil N availability and MBP, indicating N limitation for MBP. These results suggest that for soil microbes, forest is an N-saturated and P-limited ecosystem, whereas savanna is an N-limited ecosystem. Additionally, we observed a significantly lower MBN and larger MB C:N ratio in forest (50.7 mg N kg⁻¹ soil and 8.6, respectively) than in savanna (60.0 mg N kg⁻¹ soil and 6.5, respectively) during the experimental period, despite the rich soil N condition in forest. This may be due to the significantly lower soil pH in forest, which influences the different soil microbial communities (fungi-to-bacteria ratio) in forest versus savanna, and therefore, our results indicate that, in terms of microbial N dynamics, soil pH rather than soil substrate conditions controls the soil microbial communities in this area. Further studies should be focused on soil microbial community, such as PLFA, which was not evaluated in the present study.     

Carbon flow into microbial and fungal biomass as a basis for the belowground food web of agroecosystems

The origin and quantity of plant inputs to soil are primary factors controlling the size and structure of the soil microbial community. The present study aimed to elucidate and quantify the carbon (C) flow from both root and shoot litter residues into soil organic, extractable, microbial and fungal C pools. Using the shift in C stable isotope values associated with replacing C3 by C4 plants we followed root- vs. shoot litter-derived C resources into different soil C pools. We established the following treatments: Corn Maize (CM), Fodder Maize (FM), Wheat + maize Litter (WL) and Wheat (W) as reference. The Corn Maize treatment provided root- as well as shoot litter-derived C (without corn cobs) whereas Fodder Maize (FM) provided only root-derived C (aboveground shoot material was removed). Maize shoot litter was applied on the Wheat + maize Litter (WL) plots to trace the incorporation of C4 litter C into soil microorganisms. Soil samples were taken three times per year (summer, autumn, winter) over two growing seasons. Maize-derived C signal was detectable after three to six months in the following pools: soil organic C (C_org), extractable organic C (EOC), microbial biomass (C_mic) and fungal biomass (ergosterol). In spite of the lower amounts of root- than of shoot litter-derived C inputs, similar amounts were incorporated into each of the C pools in the FM and WL treatments, indicating greater importance of the root- than shoot litter-derived resources for the soil microorganisms as a basis for the belowground food web. In the CM plots twice as much maize-derived C was incorporated into the pools. After two years, maize-derived C in the CM treatment contributed 14.1, 24.7, 46.6 and 76.2% to C_org, EOC, C_mic and ergosterol pools, respectively. Fungi incorporated maize-derived C to a greater extent than did total soil microbial biomass.     

Soil microbial biomass,crop yields,and bacterial community structure as affected by long-term fertilizer treatments under wheat-rice cropping

Soil microbial biomass carbon (SMBC) and nitrogen (SMBN), soil microbial community structure, and crop yields were studied in a long-term (1982–2004) fertilization experiment carried out in Suining, Sichuan province of PR China. Eight treatments included three chemical fertilizer (CF) treatments (N, NP, NPK), three CF + farmyard manure (M) treatments (NM, NPM, NPKM), M alone and no fertilizer (CK) as control. The results showed that the soil microbial biomass was higher in soil treated with CFM than in soil treated with CF alone, and that NPKM gave the highest rice and wheat yields. The SMBC and SMBN were higher after rice than those after wheat cropping. SMBC correlated closely with soil organic matter. Average yields of wheat and rice for 22 years were higher and more stable in the fertilized plots than in control plots. Bacterial community structure was analyzed by PCR-DGGE targeting eubacterial 16S rRNA genes. A higher diversity of the soil bacterial community was found in soil amended with CFM than in other fertilizer treatments. Some specific band emerged in the soil amended with M. The highest diversity of bacterial communities was found in the NPKM treated soil. The bacterial community structures differed in rice and wheat plots. Sequencing of PCR products separated in DGGE showed that some of the common and dominant bands were closely related to Aquicella lusitana and to Acidobacteria. This study demonstrated that mixed application of N, P, and K with additional M amendment increased soil microbial biomass, diversified the bacterial communities and maintained the crop production in the Calcareous Purplish Paddy soil.     

Effects of cover crops,compost, and manure amendments on soil microbial community structure in tomato production systems

Soil microbial community structure and crop yield was investigated in field tomato production systems that compared black polyethylene mulch to hairy vetch mulch and inorganic N to organic N. The following hypotheses were tested: (1) hairy vetch cover cropping increases crop yield and significantly affects soil microbial community structure when compared to the standard plastic mulch and synthetic fertilizer-based system; (2) within plastic mulch systems, organic amendments will increase crop yield and significantly affect soil microbial community structure when compared to synthetic fertilizer; (3) crop yields and microbial community structure will be similar in the hairy vetch cover cropping and the organic amended plasticulture systems. Treatments consisted of ammonium nitrate (control), hairy vetch cover crop, hairy vetch cover crop and poultry manure compost (10 Mg/ha), three levels of poultry manure compost (5, 10, and 20 Mg/ha), and two levels of poultry manure (2.5 and 5 Mg/ha). Black polyethylene mulch was used in all treatments without hairy vetch. Fatty acid analysis was used to characterize the total soil microbial community structure, while two substrate utilization assays were used to investigate the community structure of culturable bacteria and fungi. Crop yield was not significantly increased by hairy vetch cover cropping when compared to black polyethylene mulch, although microbial community structure was significantly affected by cover cropping. Under black polyethylene mulch, crop yields were significantly increased by the highest levels of compost and manure when compared to inorganic fertilizer, but there was no detectable effect on soil microbial community structure. When cover cropping was compared to organic amended plasticulture systems, crop yields were similar one year but dissimilar the next. However, hairy vetch cover cropping and organic amendments under black plastic mulch produced significantly different soil microbial community structure.     

Dynamics of litter carbon turnover and microbial abundance in a rye detritusphere

Factors determining C turnover and microbial succession at the small scale are crucial for understanding C cycling in soils. We performed a microcosm experiment to study how soil moisture affects temporal patterns of C turnover in the detritusphere. Four treatments were applied to small soil cores with two different water contents (matric potential of ?0.0063 and ?0.0316 MPa) and with or without addition of ¹³C labelled rye residues (δ¹³C=299‰), which were placed on top. Microcosms were sampled after 3, 7, 14, 28, 56 and 84 days and soil cores were separated into layers with increasing distance to the litter. Gradients in soil organic carbon, dissolved organic carbon, extracellular enzyme activity and microbial biomass were detected over a distance of 3 mm from the litter layer. At the end of the incubation, 35.6% of litter C remained on the surface of soils at ?0.0063 MPa, whereas 41.7% remained on soils at ?0.0316 MPa. Most of the lost litter C was mineralised to CO₂, with 47.9% and 43.4% at ?0.0063 and ?0.0316 MPa, respectively. In both treatments about 6% were detected as newly formed soil organic carbon. During the initial phase of litter decomposition, bacteria dominated the mineralisation of easily available litter substrates. After 14 days fungi depolymerised more complex litter compounds, thereby producing new soluble substrates, which diffused into the soil. This pattern of differential substrate usage was paralleled by a lag phase of 3 days and a subsequent increase in enzyme activities. Increased soil water content accelerated the transport of soluble substrates, which influenced the temporal patterns of microbial growth and activity. Our results underline the importance of considering the interaction of soil microorganisms and physical processes at the small scale for the understanding of C cycling in soils.     

Influence of microbial populations and residue quality on aggregate stability

Soil structure mediates many biological and physical soil processes and is therefore an important soil property. Physical soil processes, such as aggregation, can be markedly influenced by both residue quality and soil microbial community structure. Three experiments were conducted to examine (i) the temporal dynamics of aggregate formation and the water stability of the obtained aggregates, (ii) the effect of residue quality on aggregation and microbial respiration, and (iii) the effect of fungi and bacteria on aggregation.In the first experiment, 250 μm sieved air-dried soil, mixed with wheat straw, was incubated for 14 days to allow formation of water-stable macroaggregates (>250 μm). Aggregate stability was measured by wet sieving after four different disruptive treatments: (i) soil at field capacity; (ii) soil air-dried and slowly wetted; (iii) soil air-dried and quickly wetted; (iv) 8 mm sieved soil, air-dried and immersed in water (slaking). After 14 days of incubation, maximum aggregation for soil sieved at field capacity was reached; however, these newly formed aggregates were not yet resistant to slaking.During the second experiment, the effect of low-quality residue (C/N: 108) (with or without extra mineral nitrogen) and high-quality residue (C/N: 19.7) (without extra mineral nitrogen) on macroaggregate formation and fungal and bacterial populations was tested. After 14 days, aggregation, microbial respiration, and total microbial biomass were not significantly different between the low-quality (minus mineral nitrogen) and high-quality residue treatment. However, fungal biomass was higher for the low-quality residue treatment compared to the high-quality residue treatment. In contrast, bacterial populations were favored by the high-quality residue treatment. Addition of mineral N in the low-quality residue treatment resulted in reduced macroaggregate formation and fungal biomass, but had no effect on bacterial biomass. These observations are not conclusive for the function of fungal and/or bacterial biomass in relation to macroaggregate formation. In order to directly discern the influence of soil microflora on aggregation, a third experiment was conducted in which a fungicide (captan) or bactericide (oxytetracycline) was applied to selectively suppress fungal or bacterial populations. The direct suppression of fungal growth by addition of fungicide led to reduced macroaggregate formation. However, suppression of bacterial growth by addition of bactericide did not lead to reduced macroaggregate formation. In conclusion, macroaggregate formation was positively influenced by fungal activity but was not significantly influenced by residue quality or bacterial activity.     

Impact of bovine urine deposition on soil microbial activity,biomass, and community structure

Nitrogen (N) from urine excreted by grazing animals can be transformed into N compounds that have detrimental effects on the environment. These include nitrate, which can cause eutrophication of waterways, and nitrous oxide, which is a greenhouse gas. Soil microbes mediate all of these N transformations, but the impact of urine on microbes and how initial soil conditions and urine chemical composition alter their responses to urine are not well understood. This study aimed to determine how soil inorganic N pools, nitrous oxide fluxes, soil microbial activity, biomass, and the community structure of bacteria containing amoA (nitrifiers), nirK, and nirS (denitrifiers) genes responded to the addition of urine over time. Bovine urine containing either a high (15.0 g K⁺ l^?1) or low salt content (10.4 g K⁺ l^?1) was added to soil cores at either low or high moisture content (hereafter termed dry and wet soil respectively; 35% or 70% water-filled pore space after the addition of urine). Changes in soil conditions, inorganic N pools, nitrous oxide fluxes, and the soil microbial community were then measured 1, 3, 8, 15, 29 and 44 days after urine addition. Urine addition increased soil ammonium concentrations by up to 2 mg g d.w.^?1, soil pH by up to 2.7 units, and electrical conductivity (EC) by 1.0 and 1.6 dS m^?1 in the low and high salt urine treatments respectively. In response, nitrate accumulation and nitrous oxide fluxes were lower in dry compared to wet urine-amended soils and slightly lower in high compared to low salt urine-amended soils. Nitrite concentrations were elevated (>3 μg g d.w.^?1) for at least 15 days after urine addition in wet urine-amended soils, but were only this high in the dry urine-amended soils for 1 day after the addition of urine. Microbial biomass was reduced by up to half in the wet urine-amended soils, but was largely unaffected in the dry urine-amended soils. Urine addition affected the community structure of ammonia-oxidising and nitrite-reducing bacteria; this response was also stronger and more persistent in wet than in dry urine-amended soils. Overall, the changes in soil conditions caused by the addition of urine interacted to influence microbial responses, indicating that the effect of urine on soil microbes is likely to be context-dependent.     

Relationships between soil pH and microbial properties in a UK arable soil

Effects of changing pH along a natural continuous gradient of a UK silty-loam soil were investigated. The site was a 200 m soil transect of the Hoosfield acid strip (Rothamsted Research, UK) which has grown continuous barley for more than 100 years. This experiment provides a remarkably uniform soil pH gradient, ranging from about pH 8.3 to 3.7. Soil total and organic C and the ratio: (soil organic C)/(soil total N) decreased due to decreasing plant C inputs as the soil pH declined. As expected, the CaCO₃ concentration was greatest at very high pH values (pH > 7.5). In contrast, extractable Al concentrations increased linearly (R² = 0.94, p < 0.001) from below about pH 5.4, while extractable Mn concentrations were largest at pH 4.4 and decreased at lower pHs. Biomass C and biomass ninhydrin-N were greatest above pH 7. There were statistically significant relationships between soil pH and biomass C (R² = 0.80, p < 0.001), biomass ninhydrin-N (R² = 0.90, p < 0.001), organic C (R² = 0.83, p < 0.001) and total N (R² = 0.83, p < 0.001), confirming the importance of soil organic matter and pH in stimulating microbial biomass growth. Soil CO₂ evolution increased as pH increased (R² = 0.97, p < 0.001). In contrast, the respiratory quotient (qCO₂) had the greatest values at either end of the pH range. This is almost certainly a response to stress caused by the low p. At the highest pH, both abiotic (from CaCO₃) and biotic Co₂ will be involved so the effects of high pH on biomass activity are confounded. Microbial biomass and microbial activity tended to stabilise at pH values between about 5 and 7 because the differences in organic C, total N and Al concentrations within this pH range were small. This work has established clear relationships between microbial biomass and microbial activity over an extremely wide soil pH range and within a single soil type. In contrast, most other studies have used soils of both different pH and soil type to make similar comparisons. In the latter case, the effects of soil pH on microbial properties are confounded with effects of different soil types, vegetation cover and local climatic conditions.     

The effects of fresh and stabilized pruning wastes on the biomass,structure and activity of the soil microbial community in a semiarid climate

The incorporation of organic amendments from pruning waste into soil may help to mitigate soil degradation and to improve soil fertility in semiarid ecosystems. However, the effects of pruning wastes on the biomass, structure and activity of the soil microbial community are not fully known. In this study, we evaluate the response of the microbial community of a semiarid soil to fresh and composted vegetal wastes that were added as organic amendments at different doses (150 and 300 t ha⁻¹) five years ago. The effects on the soil microbial community were evaluated through a suite of different chemical, microbiological and biochemical indicators, including enzyme activities, community-level physiological profiles (CLPPs) and phospholipid fatty acid analysis (PLFA). Our results evidenced a long-term legacy of the added materials in terms of soil microbial biomass and enzyme activity. For instance, cellulase activity reached 633 μg and 283 μg glucose g⁻¹ h⁻¹ in the soils amended with fresh and composted waste, respectively. Similarly, bacterial biomass reached 116 nmol g⁻¹ in the soil treated with a high dose of fresh waste, while it reached just 66 nmol g⁻¹ in the soil amended with a high dose of composted waste. Organic amendments produced a long-term increase in microbiological activity and a change in the structure of the microbial community, which was largely dependent on the stabilization level of the pruning waste but not on the applied dose. Ultimately, the addition of fresh pruning waste was more effective than the application of composted waste for improving the microbiological soil quality in semiarid soils.