Land cover,riparian zones and instream habitat influence stream fish assemblages in the eastern Amazon

The Amazon rainforest has experienced rapid land‐use changes over the last few decades, including extensive deforestation that can affect riparian habitats and streams. The aim of this study was to assess responses of stream fish assemblages to deforestation and land cover change in the eastern Amazon. We expected that percentage of forest in the catchment is correlated with local habitat complexity, which in turn determines fish assemblage composition and structure. We sampled 71 streams in areas with different land uses and tested for relationships between stream fish assemblages and local habitat and landscape variables while controlling for the effect of intersite distance. Fish assemblage composition and structure were correlated with forest coverage, but local habitat variables explained more of the variation in both assemblage composition and structure than landscape variables. Intersite distance contributed to variance explained by local habitat and landscape variables, and the percentage of variance explained by the unique contribution of local habitat was approximately equivalent to the shared variance explained by all three factors in the model. In these streams of the eastern Amazon, fish assemblages were most strongly influenced by features of instream and riparian habitats, yet indirect effects of deforestation on fish assemblage composition and structure were observed even though intact riparian zones were present at most sites. Long‐term monitoring of the hydrographic basin, instream habitat and aquatic fauna is needed to test for potential legacy effects and time lags, as well as assess species responses to continuing deforestation and land‐use changes in the Amazon.     

The effect of planting grass filter strips on fishes in agricultural headwater streams

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The relative influence of spatial context and catchment‐ and site‐scale environmental factors on stream fish assemblages in a human‐modified landscape

Abstract – Environmental factors act in a hierarchical manner at multiple spatial scales to influence the organisation of ecological assemblages; however, the relative influence of the different scale‐related factor groups is poorly known. We evaluated the importance of catchment‐scale and site‐scale environmental variables, as well as the spatial context of the sampling sites, in shaping stream fish assemblages in an agriculture‐dominated landscape in Hungary. Beside the variables describing spatial context (principal coordinates of a truncated distance matrix among sites), altogether 60 environmental variables were used to predict variability using a variance‐partitioning procedure in redundancy analysis. Presence–absence‐ and relative abundance‐based data were examined at two assemblage levels (entire assemblage and native assemblage) at 54 stream sites. Incorporation of spatial variables increased largely the total explained variability in case of relative abundance, but not for presence–absence data. Of the environmentally explained variance, catchment‐scale variables (e.g., land cover types, patch density) were relatively more influential for the native assemblage‐level analyses, than for analyses at the entire assemblage level, where site‐scale variables (e.g., altitude, depth) proved to be more influential. In addition, pure catchment‐ and pure site‐scale variables have the primary role in determining fish assemblage patterns, whereas the influence of shared variance and that of site‐scale riparian variables proved to be less important. Our findings demonstrate the importance of incorporating the spatial context of the sampling sites in predicting fish assemblage patterns and the effects of channelisation (dikes) in shaping assemblage–environment relationships in this human‐influenced landscape.     

The local responses of aquatic ecosystems to adjacent grassland conservation: Can streams of dreams exist in a degraded riverscape?

1. Landscape homogenization and the removal of riparian areas have altered stream ecosystems worldwide. Numerous conservation programmes attempt to improve water quality and increase instream habitat heterogeneity to elicit desired biological responses. However, the effectiveness of many conservation efforts on isolated stream fragments remains unknown, especially in grassland regions.
2. The effects of grassland conservation practices and the re-establishment of riparian corridors in the James River basin, South Dakota (USA) on stream water quality, habitat availability and aquatic macroinvertebrate and fish assemblages were studied in an agriculturally dominated prairie landscape.
3. Grassland conservation efforts may have repaired riparian condition, reduced turbidity and created more diverse instream habitat complexes at conservation sites based on comparisons with paired reference reaches. Reference sites were relatively homogeneous, with prevalent siltation, bank erosion and disturbances to the riparian vegetation. Owing to significant riparian vegetation development, overhanging and aquatic vegetation, benthic detritus and woody materials were significantly more common at conservation reaches.
4. Restoration efforts that assume ‘if you (re-)build it, they will come’ (i.e. the ‘field of dreams’ hypothesis) underestimate other important barriers to biodiversity restoration in dynamic, grassland riverscapes. Although aquatic organisms in grassland ecosystems are adapted to rapidly inhabit available habitats, the development of niche space at conservation reaches did not directly result in colonization by aquatic life.
5. Grassland management actions did not address stream connectivity issues or overcome land use influences elsewhere in the riverscape that may govern the responses of aquatic macroinvertebrates and fish. Stream fragmentation and continuing, damaging land use patterns seemed to exceed the positive effects of restoring isolated stream reaches in these heavily degraded catchments. Catchment-scale management strategies that combine reach-level restoration actions with efforts to improve connectivity are likely to be more successful in degraded riverscapes.

     

Relative importance of local and landscape variables on fish assemblages in streams of Brazilian savanna

Understanding variability in the composition of aquatic assemblages requires a multiscale perspective, since processes operating at different spatial scales (from regional to local) drive the community assembly. Here, the relative importance of environmental variables on fish species composition in streams of the Brazilian savanna (Cerrado) is assessed and quantified at local and landscape scales. The importance of both local and landscape environmental variables in structuring fish assemblages was supported. Local variables explained a substantially higher amount of variance of fish assemblages than landscape variables. However, the shared explanation indicate that landscape variables had a complementary effect. The streams sampled were mostly headwaters at similar altitudes and with similar watershed sizes, so the sensitivity of the fish assemblages, even to small landscape gradients, is highlighted. Maintaining these important instream habitat characteristics close to natural conditions seems to be essential for conserving stream fish species, and for this, the landscape context should be taken into account. Considering the near‐pristine condition of the streams studied, these findings can be used as a reference for further studies addressing the effects of human modifications on stream fish biodiversity of the Cerrado.     

Habitat relationships with fish assemblages in minimally disturbed Great Plains regions

Abstract – Effects of local environmental influences on the structure of fish assemblages were evaluated from 159 sites in two regions of the Great Plains with limited anthropogenic disturbance. These regions offered an opportunity to evaluate the structure and variation of streams and fish assemblages within the Great Plains. We used canonical correspondence analyses to determine the influence of environmental conditions on species abundances, species occurrences and assemblage characteristics. Analysis of regions separately indicated that similar environmental factors structured streams and fish assemblages, despite differences in environmental conditions and species composition between regions. Variance in fish abundance and assemblage characteristics from both regions was best explained by metrics of stream size and associated metrics (width, depth, conductivity and instream cover). Our results provide a framework and reference for conditions and assemblage structure in North American prairie streams.     

Changes in river fish assemblages associated with vegetated and degraded banks, upstream of and within nutrient-enriched zones

Fish assemblages in two reaches of the Hawkesbury–Nepean River were studied to determine the separate and combined effects of modifications to the riparian vegetation and nutrient enrichment on the composition of fish assemblages. Fish were sampled along vegetated and degraded banks where no vegetation was present, and upstream of and within zones of nutrient enrichment, associated with discharge of treated sewage effluent into the river and run-off from nearby urban areas. Although the species composition differed between river reaches, both the number of fish species and total fish abundance were significantly greater in habitats adjacent to vegetated banks. Five species [ Anguilla reinhardtii Steindachner , Macquaria novemaculeata (Steindachner) , Cyprinus carpio L. , Hypseleotris compressa (Krefft) and Myxus petardi (Castelnau)] were significantly ( P < 0.05) affected by riparian degradation, with mean abundances ranging from 3.3 to 13.0 times larger than adjacent to vegetated banks. Species richness, total abundance and abundance of M. novemaculeata and H. compressa were also higher in zones with low levels of nutrient enrichment. Multivariate analyses showed that while eutrophication has a major effect on fish assemblages in the Hawkesbury–Nepean River, even greater effects may result from clearing of riparian vegetation leading to bank degradation.     

Relationships between fish assemblages and habitat characteristics in Iowa’s non‐wadeable rivers

Abstract Non‐wadeable river systems are some of the most diverse aquatic ecosystems, but little work has been conducted to quantify the relationships between fish assemblages and habitat characteristics in them. In 2007 and 2008, 21 reaches were sampled on 16 non‐wadeable rivers across Iowa, USA. Fish were sampled in each reach with three different gears, and habitat characteristics (channel morphology, current velocity, instream cover) were measured using standard procedures. Fish assemblages were structured based on drainage basin and reaches and could be categorised as belonging to one of three groups. Reaches in the Missouri River basin group were narrow and had a high proportion of fine substrate. Reaches in the Mississippi River A group were also narrow but had a high proportion of large rocky substrate. Reaches in the Mississippi River B group tended to be wider, deeper and have higher proportions of fine substrate than the other groups. Fish assemblages were closely related to habitat characteristics and reflected differences among the three groups. Results of this study suggest that stream geomorphology may have a substantial influence on fish assemblage structure in large rivers.     

Spatial organisation of fish assemblages in the Chishui River,the last free‐flowing tributary of the upper Yangtze River,China

The Chishui River is the last free‐flowing tributary of the upper Yangtze River, China, which has an important role in fish conservation. This study aimed to explore the spatial organisation of fish assemblages in this river. Field sampling was conducted biannually between 2015 and 2017 at 41 sites from its headwater and downstream. One hundred and twenty‐two fish species were captured, including 34 endemic, 15 threatened and six exotic species. Fish assemblages varied significantly along the longitudinal gradient. Based on cluster and ordination analyses, 41 sampling sites could be divided into five site‐groups, corresponding to the headwater, upstream, midstream, downstream and the Xishui‐branch, respectively. The splitting of fish assemblages was consistent with the geographical divisions. However, fish species changed gradually along the longitudinal gradient rather than abruptly, which was consistent with the River Continuum Concept (RCC). In the headwaters and upstream, fish assemblages were mainly dominated by cold‐water and rheophilic species, while in the lower stretches, fish assemblages were dominated by warm‐water and limnophilic species. According to null models, fish assemblages were significantly nonrandomly structured at the basin scale, but randomly structured at the regional scale. This study is an important step in understanding the assembly rules of fish assemblages in this free‐flowing river and provides useful information for future fish conservation and ecological restoration.     

基于河流网络体尺度的皖河河源溪流鱼类群落的空间格局

2013年7-8月对大别山皖河河源1～3级溪流的鱼类进行了调查,着重从河流网络体空间尺度研究了鱼类多样性及群落结构的空间格局,探讨了局域栖息地条件和支流空间位置对鱼类群落的影响.1～3级溪流间,鱼类物种数随溪流级别增大显著增多,但个体数无显著变化(P＞0.05);长河、潜水和皖水3条支流间鱼类物种数和个体数均无显著差异(P＞0.05).鱼类物种数受局域栖息地条件(海拔)和支流空间位置(河流级别和下游量级)的联合影响,但鱼类个体数仅受局域栖息地条件(海拔)的影响.不同溪流级别和不同支流间的群落结构均无显著差异(P＞0.05).同物种数类似,鱼类群落结构也受局域过程(海拔)和空间过程(汇合量级和下游量级)的联合影响.本研究表明,总体上皖河河源溪流网络体中的鱼类群落是局域过程和空间过程联合作用的产物.因此,为合理保护和管理皖河河源的溪流鱼类物种,有必要兼顾局域栖息地条件与河流网络连通性的保护和恢复.     

The relationship of environmental factors to spatial and temporal variation of fish assemblages in a floodplain river in Texas, USA

Abstract –  Spatial and temporal variation of species–environment relationships were evaluated for shallow-margin and deep-water fish assemblages in the Brazos River, a large floodplain river in Texas, USA. Total variation among the deep-water assemblages (11 species, 86% turnover across gill net samples) was greater than for shallow-margins (38 species, 64% turnover across seine samples). For both shallow-margin and deep-water assemblages, variation was greater among sites than between winter and summer seasons. Shallow-margin assemblage structure was related to depth, velocity and substrate, whereas for deep-water assemblages river discharge, temperature and velocity were important. Season itself accounted for little of the variation among either shallow (6.7%) or deep-water (2.3%) assemblages. Overall temporal patterns of shallow-margin samples appeared to show responses to juvenile recruitment, spates and migration of coastal fishes, whereas for deep-water samples, patterns related to use of reproductive habitats, juvenile recruitment and seasonal activity levels. Brazos River assemblages were less variable overall in comparison with studies along similar length of reach in headwater streams and wadeable rivers. The residual variation in species distribution (54% for shallow-margin and 67% for deepwater) that was not explained by instream variables and season suggests a greater influence of biotic interactions in rivers, particularly those across the spatially dynamic interface of main channel habitats and shallow river margins.     

Relative influences of environmental and spatial factors on stream fish assemblages in Brazilian Atlantic rainforest

Understanding the role of local and spatial factors in the structuring of aquatic communities is a goal in ecology. The hierarchical structure of stream systems provides opportunities to test the hypothesis that fish assemblages that are more isolated in headwaters are structured by local and/or regional variables. Fishes and abiotic data were collected in 18 stream reaches from two hydrographic basins in the Brazilian Atlantic rainforest. The variance of species composition was partitioned into fractions explained by environmental and spatial factors. The pure environmental fraction explained ≈17% of variance and was represented by regional, habitat availability/heterogeneity and perturbation gradient. The pure spatial fraction explained ≈15% of the individual fraction. Environmental data revealed a species sorting process, and the spatial effect might be a result of different dispersal routes that fish performed during the formation of the hydrographic basins, actual land use and water resources management. The importance of maintaining connectivity in these systems was emphasised because it cannot be guaranteed that the dispersion ability of species is still occurring under current land use change.     

Trait–environment relationships in Amazon stream fish assemblages

Studies of trait–environment relationships provide important tools for the prediction of the response of biological communities to environmental alterations. The Amazon basin presents enormous potential for the development of research on this type of relationship, given the diversity of both its fish fauna and the aquatic ecosystems this fauna inhabits. The present study investigated the association between local environmental variables and the functional traits of fish in 54 streams of six major Amazonian basins. We identified the relationship between the characteristics of the streams (channel morphology, channel habitat units, riparian vegetation cover, large woody fragments and instream cover for aquatic organisms) and fish traits related to locomotion, habitat use and feeding behaviour. The fish fauna of the broader, deeper and more slowly flowing streams was dominated by nektobenthic species that exploit autochthonous resources such as fish and invertebrates. In narrow, fast‐flowing streams, by contrast, there was a predominance of benthic fishes with varying feeding habits, including periphytivorous and invertivorous species. Narrow, shady streams were inhabited by nektonic species adapted for the exploitation of resources from the marginal vegetation. The results of this study contribute to the understanding of the association between the functional structure of fish assemblages and local environmental variables in Amazonian streams. We hope that these findings will stimulate further research into the natural variation in stream fish assemblages that will ensure the development of more effective management strategies that better protect these important aquatic ecosystems.     

Variation in fish assemblages across dry-season pools in a Mediterranean stream: effects of pool morphology, physicochemical factors and spatial context

Pires DF, Pires AM, Collares-Pereira MJ, Magalhães MF. Variation in fish assemblages across dry-season pools in a Mediterranean stream: effects of pool morphology, physicochemical factors and spatial context. Ecology of Freshwater Fish 2010: 19: 74–86. © 2009 John Wiley & Sons A/S
Abstract –  Knowledge of patterns of refuge use by fish is critical for maintaining biodiversity in drought-prone streams. In this study, the fish assemblages of 21 dry-season pools in a Mediterranean stream were characterised and related to three sets of factors reflecting pool morphology, physicochemistry and spatial context. Fish were associated with the three sets of variables, with variation partitioning indicating that overall species richness and abundance were primarily related to pool morphology but relative species abundances were mainly associated with physicochemical contexts. In general, species richness was the highest but overall fish abundance was the lowest in large pools. Pools well shaded by riparian canopy held the highest richness and abundance of native fish, but relative species abundances and assembly structure varied among pools contingent on canopy cover, substrate composition and spatial location. These results suggested that conservation of fish diversity in Mediterranean streams requires networks of pools with diverse sizes and physicochemical contexts.     

Influences of local habitat and stream spatial position on fish assemblages in a dammed watershed,the Qingyi Stream,China

Abstract – Identifying the underlying mechanisms that explain the spatial variation in stream fish assemblages is crucial for the protection of species diversity. The influences of local habitat and stream spatial position on fish assemblages were examined from first‐order through third‐order streams within a dammed watershed, the Qingyi Stream, China. Based on linear regression models, the most important environmental variables influencing fish species richness were water temperature and wetted width, but stream spatial position variables were less important. Using canonical correspondence analysis, five environmental variables were identified to significantly influence fish assemblages, including three habitats (elevation, substrate and water depth) and two spatial variables (C‐link and Link). Our results suggest that, in a heavily dammed watershed, by blocking the migration routes of fishes, dams weaken the influence of stream spatial position on fish species richness. However, fish species compositions are significantly influenced by both local habitat environment and stream spatial position, which is perhaps owing to the distribution of fish species according to ecological requirements not related to spatial processes.     

Restricted movement of prairie fishes in fragmented riverscapes risks ecosystem structure being ratcheted downstream

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Fish assemblages in Atlantic Forest streams: the relative influence of local and catchment environments on taxonomic and functional species

Streams are under environmental pressures acting at different scales that influence the ecological organisation of their fish assemblages. However, the relative influence of the different scale‐related variables on assemblage composition and function is poorly understood. We evaluated the importance of local‐ and catchment‐scale environmental variables, as well as the spatial structure of the sampling sites, in shaping fish assemblages in Atlantic Forest streams. Local‐scale variables were those measured at the sampling sites, describing the local habitat conditions (e.g. depth, substrate type, altitude). Catchment‐scale variables were those integrating the upstream landscape of the sampling sites (e.g. catchment land use). Spatial distances were calculated from watercourse distance using principal coordinates of neighbour matrices. Altogether, 28 local and seven catchment variables were initially subjected to two processes of eliminating co‐linearity. Redundancy analysis was applied to the three matrices (spatial, local and catchment) to quantify the variance in the structure of the fish assemblages explained by each matrix. Local variables explained more variability in both taxonomic and functional assemblage structure, than catchment and spatial variables. Local variables also changed along the longitudinal gradient, which consequently influenced fish assemblage structure. This pattern was also influenced by anthropogenic alteration and non‐native species, which were more abundant in downstream sites. These results highlight the need to assess Atlantic Forest streams under different environmental scales, especially through the use of quantitative local‐scale metrics, and to consider the effects of longitudinal patterns in structuring fish assemblages when developing and implementing monitoring programmes, impact studies and conservation plans.     

Environmental and spatial processes: what controls the functional structure of fish assemblages in tropical rivers and headwater streams?

In this study, we investigated functional structure patterns of tropical headwater and river fish assemblages. We hypothesised that environmental conditions are primarily structuring headwater streams leading to functionally clustered assemblages, whereas processes that favour functional overdispersion would guide river assemblages. For 27 headwater streams and 22 rivers, we used eight functional traits for calculating two functional indexes: mean pairwise distance (MPD) and net relatedness index (NRI). We performed linear regressions between indexes and species richness, a multiple regression between NRI and eight environmental variables and a variation partitioning to disentangle the role of environment and space on NRI. Our findings indicate that fish assemblages of headwaters are structured by environmental conditions as most assemblages in this habitat displayed a tendency to clustering and MPD/NRI were not correlated with species diversity, whereas the opposite pattern was observed for river habitat. Four environmental variables (channel depth, water velocity, dissolved oxygen and turbidity) explain 56% of functional structure variation. These variables seem to function as selective filters in headwaters, whereas channel depth may be determinant for functional overdispersion of river fish assemblages. Components associated with space are also influencing the functional structure. Limitations of species dispersal through space (between both habitat types) appear as a possible cause to this. In this sense, both environmental conditions and processes linked with space are capable of influencing the functional structure of tropical headwater streams and river fish assemblages.     

High β‐diversity maintains regional diversity in Brazilian tropical coastal stream fish assemblages

Understanding spatial patterns of species diversity and the variables that structure biological communities is critical to successful ecosystem management. Regional diversity (γ) can be considered a combination of local diversity (α) and among sites variation (β). Using abundance data of fish species in 19 stream stretches, an analysis of diversity partitioning was used to determine the contribution of α‐ and β‐diversity to γ‐diversity. Redundancy analysis was applied to find the contribution of environmental variables and spatial configuration to species composition. Intersite variation contributed significantly to γ‐diversity. Spatial configuration and instream heterogeneity (coarse substrate, channel width, water velocity and shading) and riparian vegetation were related to local fish abundances. Conservation actions should consider that all streams are important, and prioritisation of just a small number of the richest sites is not appropriate.     

How deforestation drives stream habitat changes and the functional structure of fish assemblages in different tropical regions

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