Inheritance of resistance and genetic relationships among soybean plant introductions to races of soybean cyst nematode

Summary The objectives of this study were to determine if genes for resistance to soybean cyst nematode (SCN) in soybean PI 437654 were identical or different from the genes in Peking, and PI 90763. The F₂ plants and F₃ families were studied from crosses between PI 437654, Peking, and PI 90763. The cross PI 437654 × susceptible Essex was included to determine inheritance of resistance to SCN. For Race 3, PI 437654 was found to have genes in common with Peking and PI 90763. The segregation in PI 437654 × Essex indicated the presence of one dominant and two recessive genes. For Race 5, PI 437654 indicated the presence of similar genes as those in PI 90763 and Peking whereas, PI 437654 × Essex indicated the action of the segregation ratios of two dominant and two recessive genes. For Race 14, the data from the cross PI 437654 × PI 90763 indicated monogenic inheritance with resistance being dominant; whereas PI 437654 × Peking showed a recessive gene controlling resistance. The segregation in PI 437654(R) × Essex(S) suggested one dominant and two recessive genes for Race 14 reaction.     

Genetic analysis of resistance to soybean cyst nematode in PI 438489B

Soybean (Glycine max L. Merr.) plant introduction PI 438489B is a unique source that has resistance to all known populations of soybean cyst nematode (Heterodera glycines Ichinohe, SCN). This PI line also has many desirable agronomic characteristics, which makes it an attractive source of SCN resistance for use in a soybean breeding program. However, characterization of SCN resistance genes in this PI line have not been fully researched. In this study, we investigated the inheritance of resistance to populations of SCN races 1, 2, 3, 5, and 14 in PI 438489B. PI 438489B was crossed to the susceptible cultivar ‘Hamilton’ to generate F₁ hybrids. The random F₂ plants and F₃ lines were evaluated in the greenhouse for reaction to these five populations of SCN races. Resistance to SCN races 1, 3, and 5 were mostly conditioned by three genes (Rhg Rhg rhg). Resistance to race 2 was controlled by four genes (Rhg rhg rgh rgh). Three recessive genes were most likely involved in giving resistance to race 14. We further concluded that resistance to different populations of SCN races may share some common genes or pleiotropic effects may be involved. This revised version was published online in July 2006 with corrections to the Cover Date.     

Evaluation of wild perennial Glycine species for resistance to soybean cyst nematode and soybean rust

The genetic base for soybean cultivars is narrow compared to most other crop species. Twenty-seven wild perennial Glycine species comprise the tertiary gene pool to soybean that may contain many genes of economic importance for soybean improvement. We evaluated 16 accessions of G. argyrea, G. clandestina, G. dolichocarpa, and G. tomentella for resistance to Heterodera glycines (HG), also known as the soybean cyst nematode, and to multiple isolates of Phakopsora pachyrhizi, the causal fungus of soybean rust. All 16 accessions were classified as resistant to H. glycines HG Type 2.5.7, based on number of cysts per root mass with plant introductions (PIs) 483227, 509501, 563892, and 573064 (all G. tomentella) void of any cysts indicating no reproduction by this pest. All 16 accessions had an immune reaction to one isolate of P. pachyrhizi. Regardless of isolate, no sporulating uredinia were observed on G. argyrea (PI 505151) and G. tomentella (PIs 483227, 509501, and 573064). These results demonstrate that some accessions within the perennial Glycine species harbour resistance to both H. glycines and P. pachyrhizi and would be good candidates for wide hybridization programs seeking to transfer potentially unique multiple resistance genes into soybean.     

Breeding for resistance to cereal cyst nematode in wheat

Summary The progress of a backcross breeding programme to introduce resistance against the cereal cyst nematode into wheat is described. Methods of resistance screening and criteria for selection are detailed and the results discussed with reference to alternative procedures for the introduction of new resistance genes into major breeding programmes.     

Inheritance of resistance in soybean PI 567516C to LY1 nematode population infecting cv. Hartwig

Worldwide, cyst nematode (SCN) Heterodera glycines is the most destructive pathogen on cultivated soybean (Glycine max (L.) Merr.). In the USA yield losses in 2001 were estimated to be nearly 60 million dollars. Crop losses are primarily reduced by the use of resistant cultivars. Nematode populations are variable and have adapted to reproduce on resistant cultivars overtime because resistance primarily traces to two soybean accessions. Recently cv. Hartwig was released which has comprehensive resistance to most SCN populations. A virulent nematode population LY1 was recently selected for its reproduction on Hartwig. LY1 population originated from a mass mating of Race 2 (HG Type 1.2.5-) females with Race 5 (HG Type 1.2-) males. LY1 nematode population infects currently known sources of resistance except PI 567516C. The female indices obtained on PI 567516C and Hartwig were 7% (resistant) and 155% (susceptible), respectively. However, the genetic basis of LY1 resistance in soybean PI 567516C is not known. Resistant PI line 567516C was crossed to susceptible cultivar Hartwig to generate 105 F_2:5 families. These families together with parents, seven indicator lines and a susceptible control cv. Lee-74 were evaluated for response to LY1 nematode population in the greenhouse. Chi-square analysis showed resistance in PI567516C to LY1 was conditioned by one dominant and two recessive genes (Rhg, rhg, rhg). Chi-square value was 0.15 and P = 0.70. This information will be useful to soybean researchers for developing resistant cultivars to nematode population that infects Hartwig.     

Two microsatellite markers flanking a dominant gene for resistance to soybean cust nematode race 3

The purpose of this work was to identifymicrosatellite markers linked to a gene forresistance to Heterodera glycinesIchinohe (Soybean Cyst Nematode – SCN) insoybean cultivar Hartwig. ABC₁F₂ mapping population derivedfrom a cross between Hartwig (resistant)and the Brazilian soybean line Y23(susceptible) was used. About 200microsatellite or simple sequence repeat(SSR) primer pairs were tested in a bulkedsegregant analysis (BSA). Those thatshowed clear polymorphisms were amplifiedin the BC₁F₂ population, whichhad been previously inoculated andevaluated for resistance/susceptibility toSCN Race 3. Three SSR markers linked toSCN resistance were detected in thepopulation. Two of them, Satt 038 and Satt163, flanking a dominant resistant gene(d/a = –0.90), explained 37% of thephenotypic variance. This gene was mappedat the edge of molecular linkage group G. Broad and narrow sense heritabilities wereestimated to be 50.54% and 37.73%,respectively. A selection efficiency of91.18% was obtained with the simultaneoususe of the two markers. The identified SSRmarkers will be useful tools for assistingthe selection of homozygous genotypes andfor expediting the introgression of the SCNresistance locus from cv. Hartwig tosoybean elite cultivars.     

Genetic and molecular characterization of resistance to Heterodera glycines race isolates 1, 3, and 5 in Peking

Soybean cyst nematode (SCN), Heterodera glycines Ichinohe, has caused severe damage to soybean [Glycine max (L.) Merr.] worldwide since its discovery in 1954. ‘Peking’ is one of the most important sources in breeding SCN resistant soybean cultivars because it is resistant to Races 1, 3, and 5. Genetic information on SCN Races 1, 3, and 5 from Peking is essential to efficiently develop resistant soybean cultivars. Resistance to Race 3 in Peking was found to be controlled by three genes, but little is known on the inheritance of resistance to Races 1 and 5, and whether alleles conditioning resistance to Races 1 and 5 belong to the same linkage group and are allelic to genes giving resistance to Race 3. To determine the genetic bases of resistance to SCN Races 1, 3, and 5, Peking was crossed to the susceptible line ‘Essex’ to generate F₁ hybrids. The F₂ population and F _2:3 families were advanced from the F₁ and evaluated for resistance to SCN Race isolates 1, 3, and 5. Resistance to H. glycines Race isolates 1, 3, and 5 in Peking was found to be conditioned by three genes, one dominant and two recessive (Rhg, rhg, rhg). Peking may share similar sets of resistance loci between Races 1 and 3, but not between Races 3 and 5, or between Races 1 and 5. This revised version was published online in July 2006 with corrections to the Cover Date.     

Breeding for resistance to cereal cyst nematode in wheat II. Use of test tube cultures in selection

Summary The use of soil. naturally infested with Heterodera avenae, to select resistant heterozygotes in backcross progenies of wheat, was tested for reliability. Selfed progenies from plants selected as resistant were cultured monoxenically in test tubes with nematodes hatched from single cysts, while backcross progenies from the same parent plants were grown in pots of naturally infested soil. Cyst counts were made after two months' growth. The results showed that over 50% of the backcross lines, screened in previous generations with naturally infested soil, had been erroneously selected as resistant. The test tube cultures clearly differentiated lines carrying resistance from those which were susceptible and corroborated results from pot tests.     

Genetics of Cyst Nematode Resistance in Soybean PIs 467312 and 507354

Soybean Cyst nematode (SCN) Heterodera glycines Ichinohe is the most serious pest of soybean [Glycine max (L.) Merr.] in the world and genetic resistance in soybean cultivars have been the most effective means of control. Nematode populations, however, are variable and have adapted to reproduce on resistant cultivars over time due mainly to the narrow genetic base of SCN resistance in G. max. The majority of the resistant cultivars trace to two soybean accessions. It is hoped that new sources of resistance might provide durable resistance. Soybean plant introductions PI 467312 and PI 507354, are unique because they provide resistance to several nematode populations, i.e. SCN HG types 0, 2.7, and 1.3.6.7 (corresponding to races 3, 5, and 14) and HG types 2.5.7, 0, and 2.7 (corresponding to races 1, 3, and 5), respectively. The genetic basis of SCN resistance in these PIs is not yet known. We have investigated the inheritance of resistance to SCN HG types 0, 2.7, and 1.3.6.7 (races 3, 5, and14) in PI467312 and the SCN resistance to SCN HG types 2.5.7 and 2.7 (races 1 and 5) in PI 507354. PI 467312 was crossed to ‘Marcus’, a susceptible cultivar to generate F₁ hybrids, 196 random F₂ individuals, and 196 F_2:3 families (designated as Pop 467). PI 507354 and the cultivar Hutcheson, susceptible to all known SCN races, were crossed to generate F₁ hybrids, 225 random F₂ individuals and 225 F_2:3 families (designated as Pop 507). The F_2:3 families from each cross were evaluated for responses to the specific SCN HG types in the greenhouse. Chi-square (χ²) analyses showed resistance from PI 467312 to HG types 2.7, and 1.3.6.7 (races 5 and 14) in Pop 467 were conditioned by one dominant and two recessive genes (Rhg rhg rhg) and resistance to HG type 0 (race 3) was controlled by three recessive genes (rhg rhg rhg). The 225 F_2:3 progenies in Pop 507 showed a segregation of 2:223 (R:S) for response to both HG types 2.5.7 and 2.7 (corresponding to races 1 and 5). The Chi-square analysis showed SCN resistance from PI 507354 fit a one dominant and 3 recessive gene model (Rhg rhg rhg rhg). This information will be useful to soybean breeders who use these sources to develop SCN resistant cultivars. The complex inheritance patterns determined for the two PIs are similar to the three and four gene models for other SCN resistance sources known to date.     

RFLP mapping of a new cereal cyst nematode resistance locus in barley

Cereal cyst nematode (CCN) ( Heterodera avenae Woll.) is an economically damaging pest of barley in many of the worlds cereal growing areas. The development of CCN-resistant cultivars may be accelerated with the application of molecular markers. Three resistance genes against the pest have been mapped previously to chromosome 2 ( Ha 1, Ha 2 and Ha 3). In this study, a third gene present in the Australian barley variety 'Galleon' derived from the landrace 'CI3576' was located. Segregation analysis of CCN resistance data derived from doubled haploid populations of the cross 'Haruna Nijo'×'Galleon' identified a single major locus controlling CCN resistance in the variety 'Galleon'. This locus mapped to the long arm of chromosome 5H estimated to be 6.2 cM from the known function restriction fragment length polymorphism marker XYL (xylanase). While five genes for CCN resistance, including Ha2, have been mapped to group 2 chromosomes in the Triticeae, no gene other than Ha4 has been identified on group 5 chromosomes.     

Genetic resistance to cereal cyst nematode Heterodera avenae Woll. in wild oat Avena sterilis I. 376

Summary Three dominant genes A, B and C are involved in the resistance of Avena sterilis I. 376 to Heterodera avenae. When associated, genes A and B are responsible for the high level of resistance in I. 376. In the absence of the first two genes, gene C confers intermediate resistance characterized by the presence of a limited number of cysts on the roots. Only the completely recessive genotype allows the nematode to develop normally.     

山西省古交市大豆胞囊线虫新小种X12分布调查

X12是具有超强致病力的大豆胞囊线虫(SCN)新小种,于2012年在山西省古交市邢家社首次发现,该小种对大豆生产有巨大威胁。定期调查X12生理小种分布,对有目的地采取防治措施阻止X12小种扩散有重要意义。本研究于2019—2020年调查古交市土样,利用Riggs模式鉴定生理小种,绘制古交市X12生理小种分布图,探讨其周围生理小种类型及分布规律。结果表明,在采集的受SCN感染的33份样本中,26份鉴定出生理小种类型,占采集样本的78.8%;2号和4号生理小种在该地区分布广泛,2号小种检出频率为57.7%;4号小种检出频率为42.3%。4号小种群体能够侵染优异抗源兴县灰皮支(ZDD2315)且胞囊指数(female index,FI)大于10,即被认定为X12小种,在此次鉴定为4号小种的11份样本中,有2份进一步鉴定为X12小种,含重复采集2012年在邢家社发现的X12样本;另有3份鉴定为4号小种的样本,其SCN群体能在兴县灰皮支上寄生,但FI未达到10。这26份样本的SCN群体能在Peking和PI88788上寄生,且FI>50的分别占73.1%和57.7%。表明,除邢家社发现有X12小种,在河口镇也发现了X12小种;在邢家社周围810 km2仅检测到2号和4号小种;有3份样本的SCN群体有可能会优先由4号小种进化为X12小种。建议在古交市采取有力、有效措施减缓SCN的致病力升级及X12小种扩散。     

Tagging the juvenile locus in soybean [Glycine max (L.) Merr.] with molecular markers

Soybean cultivars carrying the `long juvenile trait' show a delayed flowering response under short day conditions. The incorporation of this character into genotypes of agronomic interest may allow a broader range of sowing dates and latitudes for a single cultivar adaptation. The objective of this work was to identify molecular markers linked to the juvenile locus in soybean. Experiments were carried out using two pairs of near isogenic lines(NILs) differing in the presence of the long juvenile trait, and RAPD markers. Four hundred primers were first screened to find polymorphism associated with the trait. Additional differences between NILs were sought by digesting the genomic DNA with five restriction enzymes. Polymorphic fragments detected between NILs were tested for linkage to the juvenile locus in the corresponding F₂ segregating populations. Marker bc357-HaeIII was linked (χ²L = 46.316) to the juvenile locus with an estimated recombination frequency of 0.13 ± 0.03in one of the genetic backgrounds studied. The fragment was cloned, sequenced and converted into a SCAR marker. Moreover,bc357-HaeIII was used as RFLP probe. Both, SCAR and RFLP generated markers linked to the juvenile locus in the two genetic backgrounds analysed. Results presented in this work can be utilised for both, the localisation of the gene associated with the character and for tagging the juvenile trait in soybean breeding programs. This revised version was published online in August 2006 with corrections to the Cover Date.     

Inheritance of resistance to pendimethalin herbicide induced stem damage in soybean

Selective herbicides are valuable weed control tools; however, selectivity is not always complete, resulting in crop damage. Stem breakage, lodging, and enlarged hypocotyls (brittle bean syndrome) limit yields of soybean [Glycine max (L.) Merr.] genotypes treated with pendimethalin [N-(1-ethylpropyl)-3,4-dimethyl-2,6-dinitrobenzenamine]. Developing genotypes with resistance to pendimethalin injury would eliminate or reduce this problem. Genetic studies were conducted to determine the inheritance of resistance to pendimethalin induced stem damage. The F_2:3 progeny of crosses involving resistant ('Asgrow A4715' and 'Flyer') and susceptible (`Essex' and K87-7-95) genotypes were screened in a greenhouse. Each genotype was treated with 1.68 kg ha^-1 pendimethalin preemergence and irrigated as needed. Plants were scored at V4 for stem breakage. Progeny distributions indicated that resistance to brittle bean syndrome damage behaved as a quantitative trait. Dominance for stem breakage was expressed in the population of A4715 × Essex. Flyer was more sensitive to herbicide damage than Asgrow A4715 because it has fewer genes for resistance or different alleles. The F_2:3 variance component heritability estimates ranged from 0.19 to 0.52. Gain from selection for resistance to pendimethalin injury is possible, and resistant progeny can be recovered from segregating populations. This revised version was published online in August 2006 with corrections to the Cover Date.     

山西省古交市大豆胞囊线虫新小种X12分布调查

X12 was a new race of soybean cyst nematode (SCN) with super strong pathogenicity and it was first detected in Xingjiashe county, Gujiao city, Shanxi province, China in 2012, which was a huge threat to soybean production. The research of race X12 distribution is meaningful for developing management strategies to prevent race X12 population from spreading. Therefore, a survey for the distribution of soybean cyst nematode race X12 in Gujiao city was conducted in 2019 and 2020. A distribution of races was constructed based on Riggs model. The race distribution was discussed in this study. A total of 33 soil samples infected soybean cyst nematode were collected. Twenty-six were identified as physiological subtypes, accounting for 78.8% of the samples, in which race 2 and race 4 accounted for 57.7% (15 samples) and 42.3% (11 samples), respectively. In general, race X12 was determined if race 4 population virulent on ZDD2315 accession with female index (FI) > 10. In 11 samples determined as race 4, including two samples were further determined as race X12 including the sample collected from Xingjiashe location, which was the original location detected as race X12 in 2012. There were three other SCN populations which determined as race 4 could virulent on ZDD2315 but with FI < 10. There were 73.1% and 57.7% of populations with FI > 50 among 26 evaluated populations on Peking and PI88788, respectively. The results showed that race X12 population were also detected in Hekouzhen except Xingjiashe. Only race 2 and race 4 were detected around Xingjiashe, covered 810 km². SCN populations with 3 samples were likely to preferentially evolve from subspecies 4 to subspecies X12. The results showed that strong and effective measures should be taken in Gujiao city to slow down the virulence escalation of SCN and the spread of X12 species.     

Association of isozyme genotypes with agronomic and seed composition traits in soybean

Summary Two crosses between Glycine max (L.) Merr. and G. soja Sieb. & Zucc. parents were used to study the association between isozyme marker loci and agronomic and seed composition traits in soybean. The parents possessed different alleles at six isozyme loci for Cross 1 (A80-244036 × PI 326581) and at eight isozyme loci for Cross 2 (A81-157007 × PI 342618A). A total of 480 BC₂F_4:6 lines from the two crosses was evaluated for 13 traits in two environments. Lines were grouped in locus classes from 0 to 5 according to the number of loci homozygous for the G. soja alleles that they possessed. Within each locus class, each isozyme genotype was represented by five random lines.Selection for G. max alleles at the isozyme loci was not effective in recovering the recurrent parent phenotype in either cross. In cross 1, however, BC₂F₄-derived lines in the 0- or 1- locus class more closely resembled the G. max parent than lines in the 4- or 5- locus classes for most of the agronomic and seed composition traits evaluated. Significant associations were found between particular isozyme genotypes and every trait analyzed. The estimated effect of genes linked to the Pgm1 locus was a delay in maturity of 6.0±3.4 days. In cross 1, the Idh2 locus was associated with a significant effect on linolenic acid content. The percentage of variation accounted for by the models of estimation varied according to the heritability of the trait. The R² was high (up to 78%) for maturity, lodging, and vining, and low (up to 21%) for seed yield. Most of the variation was associated with the BC₂F₁ family from which the lines were derived. There was little evidence that digenic epistasis was an important source of variation.Journal Paper No. J-13505 of the Iowa Agric. Home Econ. Exp. Stn., Ames, IA, Project 2475.     

Resistance and partial resistance to Phytophthora sojae in early maturity group soybean plant introductions

Phytophthora sojae, an important yield limiting pathogen of soybean, causes seed, seedling, root, and stem rots. Losses caused by P. sojae can be controlled by both major gene and partial resistance. Early maturity group (MG) soybeans are an increasingly important crop in northwestern Minnesota and eastern North Dakota. Early MG plant introductions (PIs) from the USDA Soybean Germplasm Collection and early MG public and private cultivars were evaluated for resistance and partial resistance to P. sojae. Of the 113 PIs, PI438445, and PI438454 exhibited resistance to P. sojae races 4, 7, 17, and 28 indicating they may possess either Rps1c, Rps1k, previously unidentified or multiple resistance gene to Phytophthora sojae (Rps) genes. Because they exhibited partial resistance equal to or greater than the standard check cultivar Conrad, three early MG soybean cultivars (MN0902, MN0302, and 91B53) were selected as standard checks to evaluate early MG PIs for partial resistance. Sixty-nine PIs were evaluated for partial resistance to P. sojae races 7 and 25 using the inoculum layer method. Of this group of PIs, 22 had the same level of partial resistance as Conrad to P. sojae race 7 while 19 had the same degree of partial resistance to race 25. Twelve PIs had same level of partial resistance as Conrad to both P. sojae races 7 and 25. The PIs and cultivars identified in this study will be of great value in developing early MG soybean cultivars suitable for planting in Canada and the northern United States.     

Genetic relationships of soybean cyst nematode resistance originated in Gedenshirazu and PI84751 on Rhg1 and Rhg4 loci

Soybean cyst nematode (SCN) (Heterodera glycines Ichinohe) is one of the most damaging pests of soybean (Glycine max (L.) Merr.). Host plant resistance has been the most effective control method. Because of the spread of multiple SCN races in Hokkaido, the Tokachi Agricultural Experiment Station has bred soybeans for SCN resistance since 1953 by using 2 main resistance resources PI84751 (resistant to races 1 and 3) and Gedenshirazu (resistant to race 3). In this study, we investigated the genetic relationships of SCN resistance originating from major SCN resistance genes in Gedenshirazu and PI84751 by using SSR markers. We confirmed that race 1 resistance in PI84751 was independently controlled by 4 genes, 2 of which were rhg1 and Rhg4. We classified the PI84751- type allele of Rhg1 as rhg1-s and the Gedenshirazu-type allele of Rhg1 as rhg1-g. In the cross of the Gedenshirazu-derived race 3-resistant lines and the PI84751-derived races 1- and 3-resistant lines, the presence of rhg1-s and Rhg4 was responsible for race 1-resistance. These results indicated that it was possible to select race 1 resistant plants by using marker-assisted selection for the rhg1-s and Rhg4 alleles through a PI84751 origin × Gedenshirazu origin cross.     

Identification of soybean strains resistant to Xanthomonas campestris pv. glycines

Summary Soybean germplasm was screened for resistance to bacterial pustule disease. The etiological agent, Xanthomonas campestris pv. glycines, was isolated from the leaves of field grown soybean in Maharashtra, India. The screening of soybean stocks was carried out by excised leaf inoculation method. A differential susceptibility to the pathogen was observed in the tested stocks. Two stocks P-4-2 and P-169-3 were found to be completely resistant to the pathogen and displayed an incompatible reaction. Four cultivars, EC-34160, Bragg, Kalitur and PK-472 displayed moderate resistance and the remaining stocks were susceptible to the attack of the pathogen. The stocks P-4-2 and P-169-3 remained resistant even to a high concentration of 10⁹ colony forming units (cfu)/ml of the pathogen.