Fingerprinting of three typical macrosperma Italian lentil (Lens culinaris Medik.) landraces using fluorescence-based AFLP markers

Italian lentil landraces are principally cultivated for self or local consumption. Most of them are disappearing, particularly macrosperma types by being less required by the market. A pre-requisite for the conservation and the efficient use of genetic resources is the better understanding of the extent and the distribution of the existing genetic variation, useful for future breeding programmes. Our study was undertaken to analyse and quantify the genetic diversity within and among three macrosperma Italian lentil landraces (Onano, Altamura and Villalba), using fluorescent AFLP markers. AFLP markers generated information to differentiate among closely related genotypes and group within the same cluster individuals belonging to the same landrace. The total genetic diversity (H_T), the genetic diversity within population (H_S) and the extent of differentiation between populations (D_ST) were 0.198, 0.155 and 0.043, respectively. The fixation index (G_ST = 0.219) showed that about 78% of the observed total genetic variation can be attributed to within population differences and around 22% is due to differences among populations. The gene flow estimate (N_m = 1.774) and the mean genetic distance value (0.077) suggested narrow genetic base among the analysed populations, confirming the tendency of Italian lentil landraces to group together. The present study showed that fluorescence-based AFLP technique is a biotechnological tool that can provide significant insights for research in genetic diversity of lentil landraces and their subsequent conservation and utilization in breeding programs.     

Genetic diversity and population's structure in Tunisian strawberry tree (Arbutus unedo L.)

A growing interest in the use of the Strawberry tree (Arbutus unedo L., Ericaceae) has been recently reported for industrial, pharmaceutical and chemical fields. However, the bulk material comes from natural populations because of the lack of selection of interesting cultivars. In Tunisia, A. unedo populations are severely destroyed due to deforestation and over-collecting. The species occurs in small scattered populations decreasing progressively in size. Yet, no conservation or improvement programs are attempted to preserve and promote the potential value of this resource. In this work, we assessed the genetic diversity of nine Tunisian populations of A. unedo L. from different bioclimates, using 65 polymorphic RAPD loci. The analysis of the genetic variation within and among populations is primordial to elaborate conservation and improvement programs. A low genetic diversity within a population estimated by both Nei's (He) and Shannon's diversity (H′) indices (0.155 < He < 0.248; 0.229 < H′ < 0.364) was observed due to genetic drift and selfing. At the species level, the amount of the within population variation estimated by Shannon's index (H_POP/H_SP = 0.686) and the molecular variance (80.67%) was higher than that among populations. A moderate genetic differentiation among populations (Φ_ST = 0.193 and G_ST = 0.314) which could be attributed to the long seed distance dispersal was detected. The UPGMA dendrogram based on Φ_ST values showed three clusters each including populations without relationship to bioclimatic or geographical origin indicating that differentiation occurs at a local space scale. The in situ protection measures should be made appropriately according to a population within bioclimates. The ex situ conservation and the selection of genotypes should involve extensive collection of seeds or cuttings from the within populations rather than among them.     

Water relations between leaf water potential,photosynthesis and agronomic vine response as a tool for establishing thresholds in irrigation scheduling

During the last few years, leaf water potential has been a useful tool in controlling vine water status. However, the time of measurement that could best explain short- and long-term vine responses remains a matter of discussion. The objectives of this work were to study the relationship between vine water status and vine performance and to determine what time of day leaf water potential is best correlated to physiological performance and agronomic vine response. The assay was conducted in Madrid, Spain. Plant material was Cabernet-Sauvignon (Vitis vinifera L.) grafted onto SO₄. Three irrigation treatments were established: T1 was non-irrigated, and T2 and T3 were irrigated with a constant fraction of the ETo, k = 0.45 and 0.2, respectively. Vine water status was monitored through predawn, midmorning and noon leaf water potential. Their relationships with net CO₂ assimilation rate, vegetative growth rate, yield components and must composition at harvest were studied for 3 consecutive years. Shoot growth rate and net CO₂ assimilation rate were better correlated with midmorning and noon leaf water potentials – Ψ_m and Ψ_n – than predawn leaf water potential – Ψ_pd – but all of them were significant. Shoot growth rate was zero for Ψ_pd = −0.48, Ψ_m = −1.12 and Ψ_n = −1.18 MPa. Berry size was better correlated with the water stress integral for predawn (S_Ψpd$S_{{\Psi }_{\text{pd}}}$) although the water stress integral for midmorning (S_Ψm$S_{{\Psi }_{\text{m}}}$) and noon (S_Ψn$S_{{\Psi }_{\text{n}}}$) performed quite well. No relationship was found between the water stress integral and TSS, total acidity or pH. Leaf water potential performed as a good parameter for determining both vine water status and agronomic response, but not for evaluating must composition.     

Genetic diversity and population structure of an endangered Orchid (Dendrobium loddigesii Rolfe) from China revealed by SRAP markers

Dendrobium loddigesii Rolfe is an endangered perennial herb with ornamental and medicinal value. Due to habitat deterioration and human over-exploitation, it has suffered a significant decline in abundance. Determining the level of genetic diversity and pattern of population genetic structure of this species would be helpful for its conservation and management. In this paper, sequence-related amplified polymorphism (SRAP) markers were applied to assess the level and pattern of genetic diversity in seven populations of D. loddigesii. Seventeen SRAP primer combinations generated a total of 231 clear amplification bands encompassing 187 (80.95%) polymorphic bands. A high level of genetic diversity was detected (PPB = 80.52%, H = 0.2743, I = 0.4113) at the species level. There was a moderate genetic differentiation (G_st = 0.304) among populations. Two main clusters were detected by cluster analysis using the unweighted pair-group method with arithmetic average (UPGMA). Mantel test revealed that no significant positive correlation was found between genetic distances and geographic distances (r = 0.2302; P > 0.05). Recommendations for conservation of the endangered species resources are proposed.     

Genetic diversity and population genetic structure of pomegranate (Punica granatum L.) in Iran using AFLP markers

Pomegranate (Punica granatum L.) is one of the oldest known edible fruits. It is native to Iran and spread from Iran to other areas. In this study amplified fragment length polymorphism (AFLP) was used to detect intra- and inter-population genetic diversity of pomegranate. A group of 67 accessions belonged to 4 populations from Iran was studied using eight primer combinations. A total of 221 scorable bands were amplified, of which, 118 (54.13%) were polymorphic. Resolving power (Rp) ranged from 5.70 to 9.21, and the average of polymorphism information content (PIC) per primer pair was 0.40. According to Nei's gene diversity and allelic statistics, Isfahan population had a highest genetic diversity (H = 0.3646, I = 0.5327, N_e = 1.6467). Coefficient of gene differentiation between populations (GST) was 0.124, indicated that mainly proportion of genetic variation (87.6%), was within populations and the remaining (12.4%) of the variation was among populations that, also supported by analysis of molecular variance (AMOVA). The gene flow (Nm) varied from 0.969 to 10.404 between pair-wise populations and was 3.504 among all of the populations. The Jaccard similarity coefficient between individuals ranged from 0.26 to 0.88. The UPGMA dendrogram clustered all 67 accessions into 6 groups. In some cases accessions from same region were grouped together but in most cases, there was gene exchange. To study the genetic relationships among populations, a principal coordinate analysis (PCoA) based on Nei's genetic distances was performed. Results of this study showed that AFLP marker can be a useful tool for investigating the genetic diversity of pomegranate genotypes.     

The risks of success in quality vegetable markets: Possible genetic erosion in Marmande tomatoes (Solanum lycopersicum L.) and consumer dissatisfaction

Following consumer complaints about the quality of modern varieties of tomato, landraces have strengthened their quality markets. In Spain, two tomato landraces, ‘Montserrat’ and ‘Pera Girona’, are grown in contiguous areas and have different market niches. We used amplified fragment length polymorphism (AFLP) to characterize 13 accessions of Montserrat, 14 accessions of Pera Girona, and 4 control varieties. We found a narrow genetic base for ‘Montserrat’ and ‘Pera Girona’ (8.5% of polymorphic loci) and no differences between the landraces. We studied agronomical and sensory traits to determine why the two landraces continue to have separate market niches. We found high variability among accessions within each landrace and overlapping among accessions of both landraces for all traits except fruit morphology. Consumers probably came to associate the organoleptic quality of these landraces with their external traits, but due to spontaneous crossings and introgressions these relations have been lost. Selection within landraces will be necessary to reestablish the link between morphology and sensory value and to consolidate these quality markets.     

Genetic diversity in mainland and island populations of the endangered Pancratium maritimum L. (Amaryllidaceae) in Tunisia

Tunisian Pancratium maritimum L. populations are at present endangered and represented by scattered individuals as a result of coastal habitat destruction caused by urbanization and overharvesting for its significant ornamental interest. Nineteen populations growing in mainland and island habitats were sampled for allozyme diversity to assess their genetic diversity and structuration using seven isozymes revealed by starch gel electrophoresis. The species exhibited relatively high levels of genetic diversity (the mean A_p = 1.37, P = 37.4%, and H_e = 0.100), indicates a preferentially outcrossing mating system.     

Additional nitrogen fertilization affects salt tolerance of lemon trees on different rootstocks

Irrigation with saline water is one of the major problems in citrus crop in arid and semi-arid regions. Because rootstock and fertilization play an important role in citrus salt tolerance, we investigated the influence of the nitrogen fertilization and rootstock on salt tolerance of 2-year-old potted Fino 49 lemon trees. For that, trees grafted on Citrus macrophylla (M) or Sour orange (SO) rootstocks were watered for 12 weeks with complete nutrient solution containing either 0 mM NaCl (control, C), 50 mM NaCl (S), 50 mM NaCl with an additional 10 mM potassium nitrate (S + N), or 50 mM NaCl with a 1% KNO₃ (S + Nf) foliar spray application. Trees on M were more vigorous than trees on SO and saline treatments reduced leaf growth similarly in trees on both rootstocks. Trees on SO had a lower leaf Cl⁻ and Na⁺ concentration than those on M. Additional soil nitrogen (S + N) decreased leaf Cl⁻ concentration and increased leaf K⁺ concentration in salinized trees on both rootstocks. However, the salinity-induced reduction leaf growth was similar in S + N and S trees. This was due to osmotic effect, beside leaf Cl⁻ and Na⁺ toxicity, played an important role in the growth response of Fino 49 lemon to the salt stress. Additional foliar nitrogen in the S + Nf treatment also reduced leaf Cl⁻ concentration relative to the S treatment but trees from S + Nf treatment had the lowest leaf growth. Net assimilation of CO₂ (ACO₂$A_{\text{C}{\text{O}}_2}$), stomatal conductance (g_s) and plant transpiration were reduced similarly in all three salt treatments, regardless rootstock. Salinity reduced leaf water and osmotic potential such that leaf turgor was increased. Thus, the salinity-induced ACO₂$A_{\text{C}{\text{O}}_2}$ reductions were not due to loss of turgor but rather due to high salt ion accumulation in leaves.     

新疆甜瓜地方品种资源的表型遗传多样性

 通过分析121份新疆甜瓜地方品种32个形态性状的数据,对其进行遗传多样性和亲缘关系研究。结果表明：121份新疆地方品种在蔓分支数、叶片长度、主蔓粗度、果实质量和果肉厚度等5个表型性状上差异显著;不同地区的地方品种之间在叶片长度、叶柄长度、果肉质地和风味等4个表型性状上差异显著,而在其余性状上差异不显著;121个新疆地方品种表型性状Shannon’s遗传多样性指数达0.74,不同地区地方品种的遗传多样性差异明显,新疆可能与栽培甜瓜的次生起源中心有关。121个地方品种的Euclidean遗传距离的平均值为0.42 ± 0.13,其中‘哈密野瓜’与其它地方品种的亲缘关系最远,遗传距离平均为0.76 ± 0.11。聚类分析结果表明：‘哈密野瓜’被单独聚为一个类群,其可能具有完全不同的遗传背景;其余地方品种被聚为3个类群和7个亚群,不同类群或亚群间的亲缘关系较远,各类群或亚群可能具有相互独立的遗传背景。‘哈密野瓜’属于野生甜瓜亚种Cucumis melo L. ssp. agrestis,其余地方品种属于C. melo L. var. cantalupensis和C. melo L. var. inodorus两个栽培变种。     

Does root-sourced ABA play a role for regulation of stomata under drought in quinoa (Chenopodium quinoa Willd.)

The Andean seed crop quinoa (Chenopodium quinoa Willd.) is traditionally grown under drought and other adverse conditions that constrain crop production in the Andes, and it is regarded as having considerable tolerance to soil drying. The objective of this research was to study how chemical and hydraulic signalling from the root system controlled gas exchange in a drying soil in quinoa. It was observed that during soil drying, relative g_s and photosynthesis A_max (drought stressed/fully watered plants) equalled 1, until the fraction of transpirable soil water (FTSW) decreased to 0.82 ± 0.152 and 0.33 ± 0.061, respectively, at bud formation, indicating that photosynthesis was maintained after stomata closure. The relationship between relative g_s and relative A_max at bud formation was represented by a logarithmic function (r² = 0.79), which resulted in a photosynthetic water use efficiency WUE_Amax_/gs$\text{WU}{\text{E}}_{A_{\text{max}}/g_{\text{s}}}$ of 1 when FTSW > 0.8, and increased by 50% with soil drying to FTSW 0.7–0.4. Mild soil drying slightly increased ABA in the xylem. It is concluded that during soil drying, quinoa plants have a sensitive stomatal closure, by which the plants are able to maintain leaf water potential (ψ_l) and A_max, resulting in an increase of WUE. Root originated ABA plays a role in stomata performance during soil drying. ABA regulation seems to be one of the mechanisms utilised by quinoa when facing drought inducing decrease of turgor of stomata guard cells.     

Genetic diversity of Dianthus accessions as assessed using two molecular marker systems (SRAPs and ISSRs) and morphological traits

Dianthus chinensis, Dianthus barbatus and Dianthus superbus are members of the Caryophyllaceae and are grown widely as ornamental plants. Information about relative genetic relationships can facilitate breeding programs. Here, we have compared two polymerase chain reaction (PCR)-based systems (sequence-related amplified polymorphisms (SRAPs) and inter-simple sequence repeats (ISSRs)) and morpological trait measurements for their relative effectiveness in estimating the genetic diversity found between 22 Chinese pink (D. chinensis) inbred-lines, one accession of D. barbatus and one accession of D. superbus. Interspecific differences were readily detected but the markers were less reliable in distinguishing the accessions according to their region of origin or in separating the wild species from the cultivars. Morphological traits were found to be the least effective genetic markers. The relative effectiveness of the three systems as markers for genetic diversity was concluded to be SRAP > ISSR > morphological traits, but the combined data from ISSR + SRAP analyses was superior to all three. The information generated by the SRAP marker system correlated more closely with morphological variability than did the ISSR marker system. The morphological markers of plant height/crown size ratio, lower leaf length, ovary shape index and calyx length showed strong correlations with the genetic diversity index (GD_ij, PPB(II) and PSB) as generated by the percentage of polymorphic bands and percentage of special bands of the PCR-based markers.     

Morphological and oil content variations amongst Damask rose (Rosa damascena Mill.) landraces from different regions of Iran

Forty landraces of Damask rose were collected from 28 provinces (13 origin sites) in Iran and evaluated to determine the diversity among them. The investigated characters were: flower weight, flower diameter, peduncle length, number of petals, number of stamens and oil content. Pearson's coefficients showed that number of petals was positively correlated with flower weight (r = 0.642) and number of stamens (r = 0.630), while its correlation with peduncle length was negative (r = −0.53). A negative correlation was obtained between oil content and number of stamens (r = −0.60) which is useful for indirect selection of landraces with low number of stamens and therefore high amount of oil content. Cluster analysis based on five botanical characters and oil content separated the origin site 12, which included Guilan, Mazandaran and Golestan provinces with a specific climate condition of temperate humid, from other origin sites. This distinctiveness was already confirmed by the bi-plot of the principal components. The distribution of Damask rose landraces provided useful information for the future collection and for the genetic resource management in these origin sites.     

DNA and morphological diversity of selected Greek tomato (Solanum lycopersicum L.) landraces

Utilizing inter-simple sequence repeats (ISSRs), the genetic diversity of 33 Greek tomato (Solanum lycopersicum L.) landraces and three cultivars, three cherry tomato (S. lycopersicum var.cerasiforme) cultivars and two accessions of Solanum pimpinellifolium L. was studied. Furthermore, 12 ISSR primers were also used to identify 27 morphotypes derived from 7 landraces. Based on Jaccard's coefficient, an average genetic similarity of 0.797 (ranged from 0.56 to 0.95) was found among the accessions. Cluster analysis using the UPGMA method placed all tomato landraces and cultivars into a single group, while the cherry hybrids and the S. pimpinellifolium accessions were placed in a second group. The ISSR data distinguished all the 27 morphotypes from each other and grouped the morphotypes derived from the same landrace together. The ISSR technology proved useful in describing genetic diversity among Greek tomato landraces and was capable of distinguishing the closely related morphotypes.