Effects of alternative management practices on the economics,energy and GHG emissions of a wheat–pea cropping system in the Canadian prairies

In recent years alternative farming practices have received considerable attention from Canadian producers as a means to improve their net return from grain and oilseed production. Enhancing the efficiency of nitrogen fertilizer use, including a pulse crop in the rotation, reducing tillage and pesticide use are seen as viable options to reduce reliance on fossil fuel, lower input costs and decrease the risk of soil, air and water degradation. The objective of this study was to determine the effects of 16 alternative management practices for a 2-year spring wheat (Triticum aestivum L.)–field pea (Pisum sativum L.) rotation on economic returns, non-renewable energy use efficiency, and greenhouse gas emissions. The alternative management methods for wheat consisted of a factorial combination of high vs. low soil disturbance one pass seeding, four nitrogen (N) fertilizer rates (20 kg N ha^?1, 40 kg N ha^?1, 60 kg N ha^?1 and 80 kg N ha^?1), and recommended vs. reduced rates of in-crop herbicide application. Alternative management practices for field pea were high vs. low soil disturbance one pass seeding. The resulting 16 cropping systems were evaluated at the whole farm level based on 4 years (two rotation cycles) of data from field experiments conducted on two Orthic Black Chernozem soils (clay loam and loam textures) in Manitoba, Canada. The highest net returns on the clay loam soil were for the high disturbance system with 60 kg N ha^?1 applied to wheat and the recommended rates of in-crop herbicides. The lowest application rate of N, together with low disturbance seeding, provided the highest economic returns on the loam soil. Energy use efficiency was highest for the lowest rate of N application for both tillage systems. The highest rate of N fertilizer and recommended rates of in-crop herbicide produced little additional yield response, lower net returns, and higher GHG emissions. An increase in N fertilizer application from 20 kg ha^?1 to 80 kg ha^?1 increased whole farm energy requirements by about 40%, while reducing herbicide rates had negligible effects on grain yields and total energy input. Overall, as N fertilizer rate increased, the associated GHG emissions were not offset by an increase in carbon retained in the above-ground crop biomass. Moderate to high soil test NO₃-N levels at experimental sites reduced the potential for positive yield responses to N fertilizer in this study, thus minimizing the economic benefits derived from N fertilizer application.     

Interaction matters: Synergy between vermicompost and PGPR agents improves soil quality,crop quality and crop yield in the field

Organic amendments not only promote soil quality and plant performance directly but also facilitate the establishment of introduced microbial agents. A field experiment with a fully factorial design was conducted using three levels of vermicompost (without vermicompost, low dose of 15 Mg ha⁻¹ and high dose of 30 Mg ha⁻¹), with and without plant growth-promoting rhizobacteria (PGPR) to investigate their effects in a tomato – by spinach rotation system. Our results demonstrated that applying PGPR alone had no effect on soil properties and crop performance. Vermicompost enhanced the beneficial effects of PGPR on both soil and crop, with the extent of promotion depending on the dose of vermicompost and crop types. In the presence of vermicompost, PGPR significantly (P < 0.05) reduced soil carbon and nitrogen but increased soil microbial biomass carbon and nitrogen. PGPR also significantly increased the yield of tomato and spinach under the low dose of vermicompost, but only significantly increased tomato yield under the high dose of vermicompost. There were strongly synergistic effects between vermicompost and PGPR on crop quality, with crop nitrate concentration being significantly decreased, while the vitamin C in tomato and soluble protein in spinach was significantly increased. Our results revealed the high potential of integrating vermicompost and microbial agents to substitute for regular chemical fertilization practices.     

Impact of bovine urine deposition on soil microbial activity,biomass, and community structure

Nitrogen (N) from urine excreted by grazing animals can be transformed into N compounds that have detrimental effects on the environment. These include nitrate, which can cause eutrophication of waterways, and nitrous oxide, which is a greenhouse gas. Soil microbes mediate all of these N transformations, but the impact of urine on microbes and how initial soil conditions and urine chemical composition alter their responses to urine are not well understood. This study aimed to determine how soil inorganic N pools, nitrous oxide fluxes, soil microbial activity, biomass, and the community structure of bacteria containing amoA (nitrifiers), nirK, and nirS (denitrifiers) genes responded to the addition of urine over time. Bovine urine containing either a high (15.0 g K⁺ l^?1) or low salt content (10.4 g K⁺ l^?1) was added to soil cores at either low or high moisture content (hereafter termed dry and wet soil respectively; 35% or 70% water-filled pore space after the addition of urine). Changes in soil conditions, inorganic N pools, nitrous oxide fluxes, and the soil microbial community were then measured 1, 3, 8, 15, 29 and 44 days after urine addition. Urine addition increased soil ammonium concentrations by up to 2 mg g d.w.^?1, soil pH by up to 2.7 units, and electrical conductivity (EC) by 1.0 and 1.6 dS m^?1 in the low and high salt urine treatments respectively. In response, nitrate accumulation and nitrous oxide fluxes were lower in dry compared to wet urine-amended soils and slightly lower in high compared to low salt urine-amended soils. Nitrite concentrations were elevated (>3 μg g d.w.^?1) for at least 15 days after urine addition in wet urine-amended soils, but were only this high in the dry urine-amended soils for 1 day after the addition of urine. Microbial biomass was reduced by up to half in the wet urine-amended soils, but was largely unaffected in the dry urine-amended soils. Urine addition affected the community structure of ammonia-oxidising and nitrite-reducing bacteria; this response was also stronger and more persistent in wet than in dry urine-amended soils. Overall, the changes in soil conditions caused by the addition of urine interacted to influence microbial responses, indicating that the effect of urine on soil microbes is likely to be context-dependent.     

Effect of land use types on decomposition of 14C-labelled maize residue (Zea mays L.)

The effect of three land use types on decomposition of ¹⁴C-labelled maize (Zea mays L.) residues and soil organic matter were investigated under laboratory conditions. Samples of three Dystric Cambisols under plow tillage (PT), reduced tillage (RT) and grassland (GL) collected from the upper 5 cm of the soil profile were incubated for 159 days at 20 °C with or without ¹⁴C-labelled maize residue. After 7 days cumulative CO₂ production was highest in GL and lowest in PT, reflecting differences in soil organic C (SOC) concentration among the three land use types and indicating that mineralized C is a sensitive indicator of the effects of land use regime on SOC. ¹⁴CO₂ efflux from maize residue decomposition was higher in GL than in PT, possibly due to higher SOC and microbial biomass C (MBC) in GL than in PT. ¹⁴CO₂ efflux dynamics from RT soil were different from those of PT and GL. RT had the lowest ¹⁴CO₂ efflux from days 2 to 14 and the highest from days 28 to 159. The lowest MBC in RT explained the delayed decomposition of residues at the beginning. A double exponential model gave a good fit to the mineralization of SOC and residue-¹⁴C (R² > 0.99) and allowed estimation of decomposition rates as dependent on land use. Land use affected the decomposition of labile fractions of SOC and of maize residue, but had no effect on the decomposition of recalcitrant fractions. We conclude that land use affected the decomposition dynamics within the first 1.5 months mainly because of differences in soil microbial biomass but had low effect on cumulative decomposition of maize residues within 5 months.     

Effects of bioenergy crop cultivation on earthworm communities—A comparative study of perennial (Miscanthus) and annual crops with consideration of graded land-use intensity

Energy crops are of growing importance in agriculture worldwide. This field study aimed to investigate earthworm communities of different intensively cultivated soils during a 2-year period, with special emphasis on annual and perennial energy crops like rapeseed, maize, and Miscanthus. These were compared with cereals, grassland, and fallow sites. Distribution patterns of earthworm abundance, species, and ecological categories were analysed by constrained ordination procedures (redundancy analysis; CANOCO) using a set of environmental variables as predictors, such as CN value of harvest residues, SOC and N_t content, soil pH, soil texture, and land-use intensity. The latter was determined by principal component analysis using average soil coverage and intensity of tillage, weed control, and fertilisation as input variables. It was clearly found that land-use intensity was the dominant regressor for earthworm abundance and total number of species. The diversity of earthworm communities was especially enhanced and showed a more balanced species composition in extensively managed soils under grassland, fallow, and Miscanthus. For the total number of species, Miscanthus (5.1 ± 0.9) took a medium position and neither differed significantly from intensively managed rapeseed (4.0 ± 0.9), cereals (3.7 ± 1.1), and maize sites (3.0 ± 1.4), nor from grassland (6.8 ± 1.5) and fallow (6.4 ± 1.0) sites. Total earthworm abundance ranged between 355 (±132) and 62 (±49) individuals m⁻² in fallow and maize sites, respectively.Interestingly, Miscanthus had quite positive effects on earthworm communities although the CN value of harvest residues was very high. It is recommended that Miscanthus may facilitate a diverse earthworm community even in intensive agricultural landscapes.     

Earthworms,soil mineral nitrogen and forage production in grass-based hayfields

This study was designed to address how earthworm activity influences soil mineral nitrogen (N), plant N uptake and forage yield in grass-based hayfields. Earthworm populations were reduced by applying carbaryl pesticide to the experimental field plots every 2-weeks, effectively eliminating the earthworms for up to 12-weeks from May to August. Grass yields and tissue N concentrations were measured every 2 weeks, and the soil mineral N concentration determined at the final harvest. Reducing earthworm populations for up to 12-weeks did not affect grass yield or N uptake. However, regression analysis showed that plots with undisturbed earthworm populations had higher soil N by 0.8 kg N ha^?1 per week, representing mineralization of about 10 kg N ha^?1 during the 12-week study. This was a fraction of the fertilizer N recommendation (75 kg N ha^?1) for grass-based hayfields in this region. Therefore, the increase in soil mineral N from earthworm activity was small, relative to the N requirements of the hayfield.     

Bacterial community structure of nirK-bearing denitrifiers and the development of properties of soils in created mitigation wetlands

We investigated the abundance and genetic heterogeneity of bacterial nitrite reductase genes (nir) and soil structural properties in created and natural freshwater wetlands in the Virginia piedmont. Soil attributes included soil organic matter (SOM), total organic carbon (TOC), total nitrogen (TN), pH, gravimetric soil moisture (GSM), and bulk density (D_b). A subset of soil attributes were analyzed across the sites, using euclidean cluster analysis, resulting in three soil condition (SC) groups of increasing wetland soil development (i.e., SC1 < SC2 < SC3; less to more developed or matured) as measured by accumulation of TOC, TN, the increase of GSM, and the decrease of D_b. There were no difference found in the bacterial community diversity between the groups (p = 0.4). NirK gene copies detected ranged between 3.6 × 10⁴ and 3.4 × 10⁷ copies g⁻¹ soil and were significantly higher in the most developed soil group, SC3, than in the least developed soil group, SC1. However, the gene copies were lowest in SC2 that had a significantly higher soil pH (~6.6) than the other two SC groups (~5.3). The same pattern was found in denitrifying enzyme activity (DEA) on a companion study where DEA was found negatively correlated with soil pH. Gene fragments were amplified and products were screened by terminal restriction fragment length polymorphism (T-RFLP) analysis. Among 146 different T-RFs identified, fourteen were dominant and together made up more than 65% of all detected fragments. While SC groups did not relate to whole nirK communities, most soil properties that identified SC groups did significantly correlate to dominant members of the community.     

Conservation farming strategies in East and Southern Africa: Yields and rain water productivity from on-farm action research

Improved agricultural productivity using conservation farming (CF) systems based on non-inversion tillage methods, have predominantly originated from farming systems in sub-humid to humid regions where water is not a key limiting factor for crop growth. This paper presents evidence of increased yields and improved water productivity using conservation farming in semi-arid and dry sub-humid locations in Ethiopia, Kenya, Tanzania and Zambia. Results are based on on-farm farmer and research managed experiments during the period 1999–2003. Grain yield of maize (Zea mays L.) and tef (Eragrostis Tef (Zucc)) from conventional (inversion) tillage are compared with CF with and without fertilizer. Rain water productivity (WP_rain) is assessed for the locations, treatments and seasons. Results indicate significantly higher yields (p < 0.05) for CF+ fertilizer treatments over conventional treatments in most locations, increasing from 1.2 to 2 t ha^?1 with 20–120% for maize. For tef in Ethiopian locations, the yield gains nearly doubled from 0.5–0.7 to 1.1 t ha^?1 for “best bet” CF+ fertilizer. WP_rain improved for CF+ fertilizer treatments with WP gains of 4500–6500 m³ rainwater per t maize grain yield in the lower yield range from 0 to 2.5 t ha^?1. This is explained by the large current unproductive water losses in the on-farm water balance. There was a tendency of improved WP_rain in drier locations, which can be explained by the water harvesting effect obtained in the CF treatments. The experiences from East and Southern Africa presented in this paper indicate that for smallholder farmers in savannah agro-ecosystems, conservation farming first and foremost constitutes a water harvesting strategy. It is thus a non-inversion tillage strategy for in situ moisture conservation, rather than solely aimed at minimum tillage with mulch cover. Challenges for the future adoption of CF in sub-Saharan Africa include how to improve farmer awareness of CF benefits, and how to efficiently incorporate green manure/cover crops and manage weeds.     

Cadaverine production by Azospirillum brasilense and its possible role in plant growth promotion and osmotic stress mitigation

Polyamines are considered as plant growth regulating compounds; among them, cadaverine has been correlated with root growth promotion or osmotic stress mitigation in some plant species. The purpose of this study was to evaluate the capacity of bacterial Azospirillum brasilense Az39 strain to produce cadaverine in chemically defined medium and inoculated plants, and to correlate this capacity with root growth promotion or osmotic stress mitigation in hydroponics conditions. To evaluate cadaverine production in chemically defined medium A. brasilense Az39 was cultivated aerobically at 30 °C and 80 rpm in NFb medium or NFb-l supplemented with the precursor l-lysine. To evaluate the bacterial cadaverine production and growth promotion in plants, rice (Oryza sativa L.) cv. El Paso 144 seedlings were inoculated and hydroponically cultured under optimal conditions in growth chamber. In both, cadaverine was identified and quantified by dansyl-derivative method using a fluorescence-HPLC system, and lysine decarboxylase (LDC) activity was determined by ¹⁴CO₂ production in a closed tube system fed with [¹⁴C]-lysine. To evaluate the possible role of bacterial cadaverine in osmotic stress conditions, abscisic acid (ABA) production was analyzed in rice seedlings hydroponically cultured under 0 (no stress), ?0.47 (stress) or ?0.82 (severe stress) MPa osmotic potential generated by mannitol, with the addition of 1 nM or 1 μM cadaverine or A. brasilense Az39 inoculation. Our results indicate that A. brasilense Az39 promoted root growth and helped mitigate osmotic stress in rice seedlings, due in part to cadaverine production.     

Field performance of a liquid formulation of Azospirillum brasilense on dryland wheat productivity

The beneficial effects of inoculating with Azospirillum brasilense on crop productivity have been widely described, but extensive use in typical agricultural field environments is scarcely documented. The objective of this study was to quantify the productivity of wheat (Triticum aestivum L.) whose seed was inoculated with a liquid formulation containing Azospirillum brasilense INTA Az-39 strain under typical dryland farming conditions. The study was performed in the 2002–2006 growing seasons, evaluating inoculated and non-inoculated seed at 297 experimental locations in the Pampas region of Argentina. The inoculated crops exhibited more vigorous vegetative growth, with both greater shoot and root dry matter accumulation (12.9 and 22.0%, respectively). The inoculation increased the number of harvested grains by 6.1%, and grain yield by 260 kg ha^?1 (8.0%). Positive responses were determined in about 70% of the sites, depending mostly on the attainable yield and independently of fertilization and other crop and soil management practices. In general, more response to inoculation was observed in the absence of major crop growth limitations, suggesting the complementary contribution of the Azospirillum brasilense treatment to more efficiently developing higher yielding wheat.     

Turnover of low molecular weight dissolved organic C (DOC) and microbial C exhibit different temperature sensitivities in Arctic tundra soils

Polar ecosystems are currently experiencing some of the fastest rates of climate warming. An increase in soil temperature in High Arctic regions may stimulate soil permafrost melting and microbial activity, thereby accelerating losses of greenhouse gases. It is therefore important to understand the factors regulating the rates of C turnover in polar soils. Consequently, our aims were to: (1) assess the concentration of low molecular weight (MW) dissolved organic carbon (DOC) in soil, (2) to investigate the temperature-dependent turnover of specific low MW compounds, and (3) to analyse the influence of substrate concentration on C cycling. Microbial mineralisation of labile low MW DOC in two High Arctic tundra soils was investigated using soil solutions spiked with either ¹⁴C-labelled glucose or amino acids. Spiked solutions were added to the top- and sub-soil from two ecosystem types (lichen and Carex dominated tundra), maintained at three temperatures (4–20 °C), and their microbial mineralisation kinetics monitored. ¹⁴CO₂ evolution from the tundra soils in response to ¹⁴C-glucose and -amino acid addition could best be described by a double first order exponential kinetic equation with rate constants k₁ and k₂. Both forms of DOC had a short half-life (t_1/2) in the pool of microbial respiratory substrate (t_1/2 = 1.07 ± 0.10 h for glucose and 1.63 ± 0.14 h for amino acids; exponential coefficient k₁ = 0.93 ± 0.07 and 0.64 ± 0.06 h^?1 respectively) whilst the second phase of mineralisation, assumed to be C that had entered the microbial biomass, was much slower (average k₂ = 1.30 × 10^?3 ± 0.49 × 10^?4 h^?1). Temperature had little effect on the rate of mineralisation of ¹⁴C used directly as respiratory substrate. In contrast, the turnover rate of the ¹⁴C immobilized in the microbial biomass prior to mineralisation was temperature sensitive (k₂ values of 0.99 × 10^?3 h^?1 and 1.66 × 10^?3 h^?1 at 4 and 20 °C respectively). Concentration-dependent glucose and amino acid mineralisation kinetics of glucose and amino acids (0–10 mM) were best described using Michaelis–Menten kinetics; there was a low affinity for both C substrates by the microbial community (K_m = 4.07 ± 0.41 mM, V_max = 0.027 ± 0.005 mmol kg^?1 h^?1). In conclusion, our results suggest that in these C limiting environments the flux of labile, low MW DOC through the soil solution is extremely rapid and relatively insensitive to temperature. In contrast, the turnover of C incorporated into higher molecular weight microbial C pools appears to show greater temperature sensitivity.     

Relationships between soil pH and microbial properties in a UK arable soil

Effects of changing pH along a natural continuous gradient of a UK silty-loam soil were investigated. The site was a 200 m soil transect of the Hoosfield acid strip (Rothamsted Research, UK) which has grown continuous barley for more than 100 years. This experiment provides a remarkably uniform soil pH gradient, ranging from about pH 8.3 to 3.7. Soil total and organic C and the ratio: (soil organic C)/(soil total N) decreased due to decreasing plant C inputs as the soil pH declined. As expected, the CaCO₃ concentration was greatest at very high pH values (pH > 7.5). In contrast, extractable Al concentrations increased linearly (R² = 0.94, p < 0.001) from below about pH 5.4, while extractable Mn concentrations were largest at pH 4.4 and decreased at lower pHs. Biomass C and biomass ninhydrin-N were greatest above pH 7. There were statistically significant relationships between soil pH and biomass C (R² = 0.80, p < 0.001), biomass ninhydrin-N (R² = 0.90, p < 0.001), organic C (R² = 0.83, p < 0.001) and total N (R² = 0.83, p < 0.001), confirming the importance of soil organic matter and pH in stimulating microbial biomass growth. Soil CO₂ evolution increased as pH increased (R² = 0.97, p < 0.001). In contrast, the respiratory quotient (qCO₂) had the greatest values at either end of the pH range. This is almost certainly a response to stress caused by the low p. At the highest pH, both abiotic (from CaCO₃) and biotic Co₂ will be involved so the effects of high pH on biomass activity are confounded. Microbial biomass and microbial activity tended to stabilise at pH values between about 5 and 7 because the differences in organic C, total N and Al concentrations within this pH range were small. This work has established clear relationships between microbial biomass and microbial activity over an extremely wide soil pH range and within a single soil type. In contrast, most other studies have used soils of both different pH and soil type to make similar comparisons. In the latter case, the effects of soil pH on microbial properties are confounded with effects of different soil types, vegetation cover and local climatic conditions.     

Applying an oxygen-based respiratory assay to assess soil microbial responses to substrate and N availability

Documented approaches for measuring soil microbial activities and their controlling factors under field conditions are needed to advance understanding of soil microbial processes for numerous applications. We manipulated field plots with carbon (C) and nitrogen (N) additions to test the capability of a respiratory assay to: (1) measure respiration of endogenous soil C in comparison to field-measured CO₂ fluxes; (2) determine substrate-induced respiratory (SIR) activities that are consistent with substrate availability in the field; and, (3) report N availability in the field based on assay responses with and without added N. The respiratory assay utilizes a microplate containing an oxygen-sensitive fluorescent ruthenium dye. Respiratory activities measured with this approach have previously been shown to occur within short (6–8 h) incubation periods using low substrate concentrations that minimize enrichment during the assay. Field treatments were conducted in a randomized full-factorial design with C substrate (casamino acids, glucose, or none) and inorganic N (±) as the treatment factors. With one exception, we found that respiration of endogenous soil C in the assay responded to the field treatments in a similar manner to CO₂ fluxes measured in the field. Patterns of SIR with low concentrations of added amino acid or carbohydrate substrate (200 μg C g⁻¹ soil) were consistent with field treatments. The ratio (N_ratio) of carbohydrate respiration with added N (25 μg N g⁻¹ soil) to the same without N in the assay was significantly (P < 0.05) decreased by field N amendment. The carbohydrate N_ratio exhibited a logarithmic relationship (r = 0.64, P < 0.05) with extractable inorganic soil nitrate and ammonium concentrations. These data significantly extend and support the capability of this oxygen-based respiratory assay to evaluate in situ soil activities and examine factors that limit these activities.     

The significant contribution of mycorrhizal fungi and earthworms to maize protection and phytoremediation in Cd-polluted soils

Mycorrhizal fungi and earthworms can individually or interactively influence plant growth and heavy metal uptake. The influence of earthworms and arbuscular mycorrhizal (AM) fungi either alone or in combination on maize (Zea mays L.) growth and cadmium (Cd) uptake was investigated in a calcareous soil artificially spiked with Cd. Soils were contaminated with Cd (10 and 20 mg Cd kg⁻¹), inoculated or un-inoculated with the epigeic earthworm Lumbricus rubellus and two AM fungal species (Rhizophagus irregularis and Funneliformis mosseae) for two months of growth under greenhouse conditions. Generally, earthworms alone increased both shoot P uptake and biomass but decreased shoot Cd concentration and root Cd uptake. AM fungi individually often increased total maize P uptake, declined shoot Cd concentration, and consequently produced higher total biomass. However, R. irregularis enhanced shoot Cd uptake at low Cd level and root Cd uptake at high Cd level. In plants inoculated with F. mosseae species, earthworms increased shoot biomass and Cd uptake, decreased root biomass and Cd uptake at all Cd levels, and increased shoot Cd concentration at low Cd level. In plants colonized by R. irregularis species, however, earthworm addition decreased maize biomass only at high Cd level and root Cd concentration and total maize Cd uptake at both Cd levels. Earthworm activity decreased Cd transfer from the soil to maize roots at low Cd level, but this was counterbalanced in the presence of F. mosseae. Mycorrhizal symbiosis significantly reduced the transfer of Cd from roots to shoots, independence of earthworm effect. Overall, it is concluded that L. rubellus and AM fungi, in particular F. mosseae isolate, improved maize tolerance to Cd toxicity both individually and interactively by increasing plant growth and P nutrition, and restricting Cd transfer to the aboveground biomass. Consequently, the single and interactive effects of the two soil organisms might potentially be important not only in protecting maize plants against Cd toxicity, but also in Cd phytostabilization in soils polluted by this highly toxic metal.     

The fate and toxicity of the flavonoids naringenin and formononetin in soil

The flavonoid class of plant secondary metabolites play a multifunctional role in below-ground plant–microbe interactions with their best known function as signals in the nitrogen fixing legume–rhizobia symbiosis. Flavonoids enter rhizosphere soil as a result of root exudation and senescence but little is known about their subsequent fate or impacts on microbial activity. Therefore, the present study examined the sorptive behaviour, biodegradation and impact on dehydrogenase activity (as determined by iodonitrotetrazolium chloride reduction) of the flavonoids naringenin and formononetin in soil. Organic carbon normalised partition coefficients, log K_oc, of 3.12 (formononetin) and 3.19 (naringenin) were estimated from sorption isotherms and, after comparison with literature log K_oc values for compounds whose soil behaviour is better characterised, the test flavonoids were deemed to be moderately sorbed. Naringenin (spiked at 50 μg g^?1) was biodegraded without a detectable lag phase with concentrations reduced to 0.13±0.01 μg g^?1 at the end of the 96 h time course. Biodegradation of formononetin proceeded after a lag phase of ～24 h with concentrations reduced to 4.5±1% of the sterile control after 72 h. Most probable number (MPN) analysis revealed that prior to the addition of flavonoids, the soil contained 5.4×10⁶ MPN g^?1 (naringenin) and 7.9×10⁵ MPN g^?1 (formononetin) catabolic microbes. Formononetin concentration had no significant (p>0.05) effect on soil dehydrogenase activity, whereas naringenin concentration had an overall but non-systematic impact (p=0.045). These results are discussed with reference to likely total and bioavailable concentrations of flavonoids experienced by microbes in the rhizosphere.     

Nitrous oxide production in turfgrass systems: Effects of soil properties and grass clipping recycling

Soil N₂O emissions can affect global environments because N₂O is a potent greenhouse gas and ozone depletion substance. In the context of global warming, there is increasing concern over the emissions of N₂O from turfgrass systems. It is possible that management practices could be tailored to reduce emissions, but this would require a better understanding of factors controlling N₂O production. In the present study we evaluated the spatial variability of soil N₂O production and its correlation with soil physical, chemical and microbial properties. The impacts of grass clipping addition on soil N₂O production were also examined. Soil samples were collected from a chronosequence of three golf courses (10, 30, and 100-year-old) and incubated for 60 days at either 60% or 90% water filled-pore space (WFPS) with or without the addition of grass clippings or wheat straw. Both soil N₂O flux and soil inorganic N were measured periodically throughout the incubation. For unamended soils, cumulative soil N₂O production during the incubation ranged from 75 to 972 ng N g⁻¹ soil at 60% WFPS and from 76 to 8842 ng N g⁻¹ soil at 90% WFPS. Among all the soil physical, chemical and microbial properties examined, soil N₂O production showed the largest spatial variability with the coefficient of variation ~110% and 207% for 60% and 90% WFPS, respectively. At 60% WFPS, soil N₂O production was positively correlated with soil clay fraction (Pearson's r = 0.91, P < 0.01) and soil NH₄⁺–N (Pearson's r = 0.82, P < 0.01). At 90% WFPS, however, soil N₂O production appeared to be positively related to total soil C and N, but negatively related to soil pH. Addition of grass clippings and wheat straw did not consistently affect soil N₂O production across moisture treatments. Soil N₂O production at 60% WFPS was enhanced by the addition of grass clippings and unaffected by wheat straw (P < 0.05). In contrast, soil N₂O production at 90% WFPS was inhibited by the addition of wheat straw and little influenced by glass clippings (P < 0.05), except for soil samples with >2.5% organic C. Net N mineralization in soil samples with >2.5% organic C was similar between the two moisture regimes, suggesting that O₂ availability was greater than expected from 90% WFPS. Nonetheless, small and moderate changes in the percentage of clay fraction, soil organic matter content, and soil pH were found to be associated with large variations in soil N₂O production. Our study suggested that managing soil acidity via liming could substantially control soil N₂O production in turfgrass systems.     

Litter quality effects on soil carbon and nitrogen dynamics in temperate alley cropping systems

Microcosm and litterbag experiments were conducted to determine the effects of litter quality, soil properties and microclimate differences on soil carbon (C) and nitrogen (N) mineralization in alley cropping systems. Bulk soils were collected from 0 to 20 cm depth at three sites: a 21-year old pecan (Carya illinoinensis)/bluegrass (Poa trivialis) intercrop (Pecan site) in north-central Missouri, a 12-year old silver maple (Acer saccharinum)/soybean (Glycine max)–maize (Zea mays) rotation (Maple site) in northeastern Missouri and a restored prairie site (MDC site) in southwestern Missouri. Seven tree and crop litters with varying composition were collected, including pecan, silver maple, chestnut and walnut leaf litter (tree litter) and maize, soybean and bluegrass residues (crop litter). Aerobic microcosm incubations were maintained at 25 °C and a soil water potential of −47 kPa. Unamended MDC soil mineralized 24 and 18% more CO₂ than the Pecan and Maple soils, respectively. Soil amended with crop litter mineralized on average 32% more CO₂ than when amended with tree litter. Net N mineralization from soybean litter was 40 mg kg⁻¹, while all other litter immobilized N for various durations. A double pool and a single pool model best described C and N mineralization from amended soils, respectively. Cumulative CO₂ mineralized, labile C fraction (C₁) and potentially mineralizable C (C₀) were correlated to litter total N and lignin contents and to (lignin + polyphenol):N ratio. In the field, bluegrass litter decomposed and released N twice as fast as pecan leaf litter. Soybean, maize and silver maple litter released 84, 75 and 63% of initial N, respectively, 308 days after field placement, while no differences in mass loss was observed among the three litter materials. At the Maple site, mass and N remaining, 308 days after field placement was lower at the middle of the alley, corresponding to higher soil temperature and water content. No differences in mass loss and N release patterns were observed at the Pecan site. Microclimate and litter quality effects can lead to differences in nutrient availability in alley cropping systems.     

Rapid estimation of microbial biomass in grassland soils by ultra-violet absorbance

A reliable and simple technique for estimating soil microbial biomass (SMB) is essential if the role of microbes in many soil processes is to be quantified. Conventional techniques are notoriously time-consuming and unreproducible. A technique was investigated that uses the UV absorbance at 280 nm of 0.5 M K₂SO₄ extracts of fumigated and unfumigated soils to estimate the concentrations of carbon, nitrogen and phosphorus in the SMB. The procedure is based on the fact that compounds released after chloroform fumigation from lysed microbial cells absorb in the near UV region. Using 29 UK permanent grassland soils, with a wide range of organic matter (2.9–8.0%) and clay contents (22–68%), it was demonstrated that the increase in UV absorbance at 280 nm after soil fumigation was strongly correlated with the SMB C (r=0.92), SMB N (r=0.90) and SMB P (r=0.89), as determined by conventional methods. The soils contained a wide range of SMB C (412–3412 μg g⁻¹ dry soil), N (57–346 μg g⁻¹ dry soil) and P (31–239 μg g⁻¹ dry soil) concentrations. It was thus confirmed that the UV absorbance technique described was a rapid, simple, precise and relatively inexpensive method of estimating soil microbial biomass.     

Sclerotium rolfsii dynamics in soil as affected by crop sequences

Crop rotation has been used for the management of soilborne diseases for centuries, but has not often been planned based on scientific knowledge. Our objective was to generate information on Sclerotium rolfsii dynamics under different crop or intercrop activities, and design and test a research approach where simple experiments and the use of models are combined to explore crop sequences that minimize Southern blight incidence.The effect of seventeen green manure (GM) amendments on sclerotia dynamics was analyzed in greenhouse and field plot experiments during two years. The relative densities of viable sclerotia 90 days after winter GM (WGM) incorporation were generally lower than after summer GM (SGM) incorporation, with average recovery values of 60% and 61% for WGM in the field, 66% and 43% for WGM in the greenhouse, and 162% to 91% for SGM in the greenhouse, in 2009 and 2010, respectively. Sclerotia survival on day d after GM amendment was described by the model S_f = S_i × exp(−b × d), relating initial (S_i) and final (S_f) sclerotia densities. Relative decay rates of the sclerotia (b) in SGM amended soil were largest for alfalfa (0.0077 ± 0.0031 day⁻¹) and sudangrass (0.0072 ± 0.0030 day⁻¹). In WGM amended soil, the largest b values were for oat (0.0096 ± 0.0024 day⁻¹), wheat (0.0090 ± 0.0024 day⁻¹) and alfalfa (0.0087 ± 0.0023 day⁻¹).The effect of three cropping sequences (sweet pepper–fallow, sweet pepper–black oat and sweet pepper–onion) on sclerotia dynamics was analyzed in microplot experiments, and the data were used to calibrate the model P_f = P_i/(α + βP_i), relating initial (P_i) and final (P_f) sclerotia densities. Median values for the relative rate of population increase at low P_i (1/α, dimension less) and the asymptote (1/β, number of viable sclerotia in 100 g of dry soil) were 8.22 and 4.17 for black oat (BO), 1.13 and 8.64 for onion (O), and 6.26 and 17.93 for sweet pepper (SwP).By concatenating the two models, sclerotia population dynamics under several crop sequences were simulated. At steady state, the sequence SwP–O–Fallow–BO resulted in the lowest long-term sclerotia density (7.09 sclerotia/100 g soil), and SwP–Fallow in the highest (17.89 sclerotia/100 g soil). The developed methodology facilitates the selection of a limited number of rotation options to be tested in farmers’ fields.     

Evapotranspiration of irrigated and rainfed maize–soybean cropping systems

We have been making year-round measurements of mass and energy exchange in three cropping systems: (a) irrigated continuous maize, (b) irrigated maize–soybean rotation, and (c) rainfed maize–soybean rotation in eastern Nebraska since 2001. In this paper, we present results on evapotranspiration (ET) of these crops for the first 5 years of our study. Growing season ET in the irrigated and rainfed maize averaged 548 and 482 mm, respectively. In irrigated and rainfed soybean, the average growing season ET was 452 and 431 mm, respectively. On average, the maize ET was higher than the soybean ET by 18% for irrigated crops and by 11% for rainfed crops. The mid-season crop coefficient K_c (=ET/ET₀ and ET₀ is the reference ET) for irrigated maize was 1.03 ± 0.07. For rainfed maize, significant dry-down conditions prevailed and mid-season K_c was 0.84 ± 0.20. For irrigated soybean, the mid-season K_c was 0.98 ± 0.02. The mid-season dry down in rainfed soybean years was not severe and the K_c (0.90 ± 0.13) was only slightly lower than the values for the irrigated fields. Non-growing season evaporation ranged from 100 to 172 mm and contributed about 16–28% of the annual ET in irrigated/rainfed maize and 24–26% in irrigated/rainfed soybean. The amount of surface mulch biomass explained 71% of the variability in non-growing season evaporation totals. Water use efficiency (or biomass transpiration efficiency), defined as the ratio of total plant biomass (Y_DM) to growing season transpiration (T) was 5.20 ± 0.34 and 5.22 ± 0.36 g kg^?1, respectively for irrigated and rainfed maize crops. Similarly, the biomass transpiration efficiency for irrigated and rainfed soybean crops was 3.21 ± 0.35 and 2.96 ± 0.30 g kg^?1. Thus, the respective biomass transpiration efficiency of these crops was nearly constant regardless of rainfall and irrigation.