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1.
Werner Jud J. Barbro Winkler Bishu Niederbacher Simon Niederbacher Jörg-Peter Schnitzler 《Plant methods》2018,14(1):109
Background
Climate change represents a grand challenge for agricultural productivity. Understanding complex plant traits such as stress tolerance, disease resistance or crop yield is thus essential for breeding and the development of sustainable agriculture strategies. When screening for the most robust plant phenotypes, fast, high-throughput phenotyping represents the means of choice.Results
We have developed a plant phenotyping platform to measure the emission of volatile organic compounds (VOCs), photosynthetic gas exchange and transpiration under ambient, or abiotic and biotic stress conditions. These parameters are highly suitable markers to non-invasively and dynamically study plant growth and plant stress status, making them perfect test variables for long-term, online plant monitoring. Here we introduce the new phenotyping platform, termed VOC-SCREEN, and present results of a first case study with three barley cultivars, demonstrating that the plant’s volatilome can be successfully applied to discriminate different barley varieties.Conclusion
Volatilomics is a promising technique to non-invasively screen for plant phenotypic traits.2.
Hanna??wiek-Kupczyńska Thomas?Altmann Daniel?Arend Elizabeth?Arnaud Dijun?Chen Guillaume?Cornut Fabio?Fiorani Wojciech?Frohmberg Astrid?Junker Christian?Klukas Matthias?Lange Cezary?Mazurek Anahita?Nafissi Pascal?Neveu Jan?van?Oeveren Cyril?Pommier Hendrik?Poorter Philippe?Rocca-Serra Susanna-Assunta?Sansone Uwe?Scholz Marco?van?Schriek ümit?Seren Bj?rn?Usadel Stephan?Weise Paul?Kersey Pawe??Krajewski
3.
Context
Despite decades of research, there is an intense debate about the consistency of the hump-shaped pattern describing the relationship between diversity and disturbance as predicted by the intermediate disturbance hypothesis (IDH). Previous meta-analyses have not explicitly considered interactive effects of disturbance frequency and intensity of disturbance on plant species diversity in terrestrial landscapes.Objective
We conducted meta-analyses to test the applicability of IDH by simultaneously examining the relationship between species richness, disturbance frequency (quantified as time since last disturbance as originally proposed) and intensity of disturbance in forest landscapes.Methods
The effects of disturbance frequency, intensity, and their interaction on species richness was evaluated using a mixed-effects model.Results
We found that species richness peaks at intermediate frequency after both high and intermediate disturbance intensities, but the richness-frequency relationship differed between intensity classes.Conclusions
Our study highlights the need to measure multiple disturbance components that could help reconcile conflicting empirical results on the effect of disturbance on plant species diversity.4.
Jodie Martin Gwenaël Vourc’h Nadège Bonnot Bruno Cargnelutti Yannick Chaval Bruno Lourtet Michel Goulard Thierry Hoch Olivier Plantard A. J. Mark Hewison Nicolas Morellet 《Landscape Ecology》2018,33(6):937-954
Context
Routine movements of large herbivores, often considered as ecosystem engineers, impact key ecological processes. Functional landscape connectivity for such species influences the spatial distribution of associated ecological services and disservices.Objectives
We studied how spatio-temporal variation in the risk-resource trade-off, generated by fluctuations in human activities and environmental conditions, influences the routine movements of roe deer across a heterogeneous landscape, generating shifts in functional connectivity at daily and seasonal time scales.Methods
We used GPS locations of 172 adult roe deer and step selection functions to infer landscape connectivity. In particular, we assessed the influence of six habitat features on fine scale movements across four biological seasons and three daily periods, based on variations in the risk-resource trade-off.Results
The influence of habitat features on roe deer movements was strongly dependent on proximity to refuge habitat, i.e. woodlands. Roe deer confined their movements to safe habitats during daytime and during the hunting season, when human activity is high. However, they exploited exposed open habitats more freely during night-time. Consequently, we observed marked temporal shifts in landscape connectivity, which was highest at night in summer and lowest during daytime in autumn. In particular, the onset of the autumn hunting season induced an abrupt decrease in landscape connectivity.Conclusions
Human disturbance had a strong impact on roe deer movements, generating pronounced spatio-temporal variation in landscape connectivity. However, high connectivity at night across all seasons implies that Europe’s most abundant and widespread large herbivore potentially plays a key role in transporting ticks, seeds and nutrients among habitats.5.
Context
Disturbances create spatial variation in environments that may influence animal foraging. Granivory by rodents can influence seed supply and thus plant establishment. However, effects of disturbance patterns on rodent seed removal in western North American conifer forests are generally unknown.Objectives
We conducted a study in lodgepole pine (Pinus contorta var. latifolia) forests of Greater Yellowstone (Wyoming, USA) to answer: (1) How do seed removal and rodent activity vary between recently burned and adjacent unburned forests and with distance from fire perimeter? (2) Which microhabitat conditions explain variability in seed removal and rodent activity?Methods
One or two years after wildfires, we established transects (n = 23) with four stations each: at 10 and 40 m from the fire perimeter in both burned and unburned forest. At stations, we deployed trays with lodgepole pine seeds and cameras pointed at trays for 28 days and quantified habitat structure and seed abundance.Results
Seed removal, which averaged 85%, and diurnal rodent activity did not differ between burned and unburned forests or with distance from the fire perimeter; however, nocturnal rodent activity was lower in burned forests. Seed removal and diurnal rodent activity were not associated with any microhabitat conditions we measured. However, nocturnal rodent activity was associated with microhabitat in both burned and unburned forests.Conclusions
High seed removal rates suggested that rodent foraging was not reduced by high-severity wildfire. If observed seed removal represents natural conditions, post-dispersal seed predation could influence post-fire recruitment of a widespread foundation tree species.6.
Alberto Suárez-Esteban Lenore Fahrig Miguel Delibes José M. Fedriani 《Landscape Ecology》2016,31(4):721-729
Context
Seed-dispersing animals often move along “linear gaps” (linear anthropogenic features such as roads and trails that contain little vegetation), especially in densely-vegetated landscapes. As a result, linear gaps and their verges may receive more seeds than adjacent habitats. In addition, linear gap verges may provide more suitable conditions for plant establishment than neighboring habitats. In this way, linear gaps may increase plant abundance and diversity, and facilitate connectivity of native and non-native plant populations, ultimately increasing plant diversity in the landscape.Objectives
We reviewed current evidence for the potential of anthropogenic linear gaps to increase plant abundance and diversity, and for the mechanisms involved.Methods
We reviewed peer-reviewed literature published up to December 31st, 2014.Results
Most (69.2 %) studies found significantly higher plant abundance and/or diversity in linear gap verges than in adjacent habitats. This suggests that linear gaps can increase plant abundance and diversity, and possibly facilitate population spread. However, there was a strong bias toward the study of exotic species. In addition, there were few mechanistic studies to allow estimation of the relative contributions of dispersal and post-dispersal mechanisms operating in linear gaps.Conclusions
Future studies should focus on entire plant communities, not just exotic species, and should allow identification of the mechanisms by which linear gaps increase plant abundance and diversity. With this knowledge in hand, we will be in a better position to understand whether the net benefit of linear gaps for plant diversity in general outweigh their facilitation of the spread of exotic species.7.
Background
Recent years have seen an increase in methods for plant phenotyping using image analyses. These methods require new software solutions for data extraction and treatment. These solutions are instrumental in supporting various research pipelines, ranging from the localisation of cellular compounds to the quantification of tree canopies. However, due to the variety of existing tools and the lack of central repository, it is challenging for researchers to identify the software that is best suited for their research.Results
We present an online, manually curated, database referencing more than 90 plant image analysis software solutions. The website, plant-image-analysis.org, presents each software in a uniform and concise manner enabling users to identify the available solutions for their experimental needs. The website also enables user feedback, evaluations and new software submissions.Conclusions
The plant-image-analysis.org database provides an overview of existing plant image analysis software. The aim of such a toolbox is to help users to find solutions, and to provide developers a way to exchange and communicate about their work.8.
Charles A. Martin 《Landscape Ecology》2018,33(11):1831-1835
Context
The ecological literature is filled with studies highlighting the importance of both habitat loss and fragmentation on biodiversity. The patch concept has been central to these findings, being also at the heart of many ecological theories. Recently, the habitat amount hypothesis has been proposed as an alternative, where the patch concept is put to a rest, and both patch size and patch isolation effects on species richness are reduced to a single gradient: habitat loss in the landscape.Objectives
As this theory stated clear predictions that could be experimentally tested, many formal tests of the hypothesis have been published recently and this study aims at synthesizing their results.Methods
A meta-analysis of 13 tests of the habitat amount hypothesis was conducted, to produce a single combined test of the theory.Results
The 13 tests combined suggest that effects of patch size and isolation, while controlling for habitat amounts, do exist although their overall effect is weak (r?=?0.158).Conclusions
Literal interpretations of the habitat amount hypothesis, where patch size and isolation have absolutely no effect on species richness, are probably oversimplifications of the processes at work. Still, the theory could prove useful as a baseline of the effects of habitat loss, against which patch size and isolation effects must be contrasted.9.
Balázs Deák Orsolya Valkó Péter Török András Kelemen Ádám Bede András István Csathó Béla Tóthmérész 《Landscape Ecology》2018,33(7):1117-1132
Context
Landscape and habitat filters are major drivers of biodiversity of small habitat islands by influencing dispersal and extinction events in plant metapopulations.Objectives
We assessed the effects of landscape and habitat filters on the species richness, abundance and trait composition of grassland specialist and generalist plants in small habitat islands. We studied traits related to functional spatial connectivity (dispersal ability by wind and animals) and temporal connectivity (clonality and seed bank persistence) using model selection.Methods
We sampled herbaceous plants, landscape (local and regional isolation) and habitat filters (inclination, woody encroachment and disturbance) in 82 grassland islands in Hungary.Results
Isolation decreased the abundance of good disperser specialist plants due to the lack of directional vectors transferring seeds between suitable habitat patches. Clonality was an effective strategy, but persistent seed bank did not support the survival of specialist plants in isolated habitats. Generalist plants were unaffected by landscape filters due to their wide habitat breadth and high propagule availability. Clonal specialist plants could cope with increasing woody encroachment due to their high resistance against environmental changes; however, they could not cope with intensive disturbance. Steep slopes providing environmental heterogeneity had an overall positive effect on species richness.Conclusions
Specialist plants were influenced by the interplay of landscape filters influencing their abundance and habitat filters affecting species richness. Landscape filtering by isolation influenced the abundance of specialist plants by regulating seed dispersal. Habitat filters sorted species that could establish and persist at a site by influencing microsite availability and quality.10.
Tobias Kuemmerle Christian Levers Benjamin Bleyhl Wanda Olech Kajetan Perzanowski Christine Reusch Stephanie Kramer-Schadt 《Landscape Ecology》2018,33(9):1559-1572
Context
Understanding habitat selection can be challenging for species surviving in small populations, but is needed for landscape-scale conservation planning.Objectives
We assessed how European bison (Bison bonasus) habitat selection, and particularly forest use, varies across subpopulations and spatial scales.Methods
We gathered the most comprehensive European bison occurrence dataset to date, from five free-ranging herds in Poland. We compared these data to a high-resolution forest map and modelled the influence of environmental and human-pressure variables on habitat selection.Results
Around 65% of European bison occurrences were in forests, with cows showing a slightly higher forest association than bulls. Forest association did not change markedly across spatial scales, yet differed strongly among herds. Modelling European bison habitat suitability confirmed forest preference, but also showed strong differences in habitat selection among herds. Some herds used open areas heavily and actively selected for them. Similarly, human-pressure variables were important in all herds, but some herds avoided human-dominated areas more than others.Conclusions
Assessing European bison habitat across multiple herds revealed a more generalist habitat use pattern than when studying individual herds only. Our results highlight that conflicts with land use and people could be substantial if bison are released in human-dominated landscapes. Future restoration efforts should target areas with low road and human population density, regardless of the degree of forest cover. More broadly, our study highlights the importance of considering multiple subpopulations and spatial scales in conservation planning.11.
Context
In response to predominantly local and private approaches to landscape change, landscape ecologists should critically assess the multiscalar influences on landscape design.Objectives
This study develops a governance framework for Nassauer and Opdam’s “Design-in-Science” model. Its objective is to create an approach for examining hierarchical constraints on landscape design in order to investigate linkages among urban greening initiatives, patterns of landscape change, and the broader societal values driving those changes. It aims to provide an integrative and actionable approach for landscape sustainability science.Methods
This framework is examined through an ethnographic study of public policy processes surrounding the urban tree initiatives in Boston, MA; Philadelphia, PA; and Baltimore, MD.Results
These initiatives demonstrate the impact of political and economic decentralization on urban landscape patterns. Their collaborative governance approach incorporates diverse resources to implement programming at a fine-scale. The predominant tree giveaway program fragments the urban and regional forest.Conclusion
Spatial and temporal fragmentation undermines the long-term security of urban greening programs, and it suggests reconsideration of the role of state regimes in driving broad scale spatial planning.12.
Context
Revealing the interaction between landscape pattern and urban land surface temperature (LST) can provide insight into mitigating thermal environmental risks. However, there is no consensus about the key landscape indicators influencing LST.Objectives
This study sought to identify the key landscape indicators influencing LST considering a large number of landscape pattern variables and multiple scales.Methods
This study applied ordinary least squares regression and partial least squares regression to explore a combination of landscape metrics and identify the key indicators influencing LST. A total of 49 Landsat images of the main city of Shenzhen, China were examined at 13 spatial scales.Results
The landscape composition indicators derived from biophysical proportion, a new metric developed in this study, more effectively determined LST variation than those derived from land cover proportion. Area-related landscape configuration indicators independently characterized LST variation, but did not give much more new information beyond that given by land cover proportion. Shape-related landscape configuration indicators were effective in combination with land cover proportion, but their importance was uncertain when temporal and spatial scales varied.Conclusions
The influence of landscape configuration on LST exists but should not be overestimated. Comparison of numerous variables at multiple spatiotemporal scales can help identify the influence of multiple landscape characteristics on LST variation.13.
Context
In the face of global change, evidence-based information for policy development and political action is needed. Research syntheses have the potential to produce more reliable and generalizable results than are possible from small and regional extent primary studies. Data-sharing and detailed reporting are indispensable prerequisites for syntheses, however syntheses often are seriously hindered by insufficient reporting of primary data.Objectives
Since many ecological processes are strongly influenced by spatial pattern, we suggest reporting guidelines for landscape-ecological studies. Better data reporting will not only benefit the quality of primary research studies, and allow replication, but also facilitate research syntheses.Methods
We evaluated how landscape context information was reported in primary research articles including recently published articles in the journal Landscape Ecology. We further looked at the author guidelines for several journals to check what authors are expected to report.Results
Specifically, we found that the existing reporting of landscape context information was insufficient to evaluate the effects of tropical forest edges on bird nest predation risk. More generally, exact study locations were not provided in any evaluated article. No journal gave detailed instructions to authors on how to report study characteristics.Conclusions
We argue that consideration of the following reporting guidelines could substantially facilitate research syntheses: (1.1) detailed map of study area, (1.2) spatial location of sampling points; (2.1) land-use types; (2.2) vegetation, key resources, soil, geology, and disturbance history; (2.3) additional site parameters; (3) results for each sampling point.14.
Background
Despite increasing demand, imaging the internal structure of plant organs or tissues without the use of transgenic lines expressing fluorescent proteins remains a challenge. Techniques such as magnetic resonance imaging, optical projection tomography or X-ray absorption tomography have been used with various success, depending on the size and physical properties of the biological material.Results
X-ray in-line phase tomography was applied for the imaging of internal structures of maize seeds at early stages of development, when the cells are metabolically fully active and water is the main cell content. This 3D imaging technique with histology-like spatial resolution is demonstrated to reveal the anatomy of seed compartments with unequalled contrast by comparison with X-ray absorption tomography. An associated image processing pipeline allowed to quantitatively segment in 3D the four compartments of the seed (embryo, endosperm, nucellus and pericarp) from 7 to 21 days after pollination.Conclusion
This work constitutes an innovative quantitative use of X-ray in-line phase tomography as a non-destructive fast method to perform virtual histology and extends the developmental stages accessible by this technique which had previously been applied in seed biology to more mature samples.15.
Romaike S. Middendorp Alvaro J. Pérez Armando Molina Eric F. Lambin 《Landscape Ecology》2016,31(7):1581-1599
Context
Natural regenerating forests are rapidly expanding in the tropics. Forest transitions have the potential to restore biodiversity. Spatial targeting of land use policies could improve the biodiversity benefits of reforesting landscapes.Objective
We explored the relative importance of landscape attributes in influencing the potential of tree cover increase to restore native woody plant biodiversity at the landscape scale.Methods
We developed land use scenarios that differed in spatial patterns of reforestation, using the Pangor watershed in the Ecuadorian Andes as a case study. We distinguished between reforestation through natural regeneration of woody vegetation in abandoned fallows and planted forests through managed plantations of exotic species on previously cultivated land. We simulated the restoration of woody plant biodiversity for each scenario using LANDIS-II, a process-based model of forest dynamics. A pair-case comparison of simulated woody plant biodiversity for each scenario was conducted against a random scenario.Results
Species richness in natural regenerating fallows was considerably higher when occurring in: (i) close proximity to remnant forests; (ii) areas with a high percentage of surrounding forest cover; and (iii) compositional heterogeneous landscapes. Reforestation at intermediate altitudes also positively affected restoration of woody plant species. Planted exotic pine forests negatively affected species restoration.Conclusions
Our research contributes to a better understanding of the recolonization processes of regenerating forests. We provide guidelines for reforestation policies that aim to conserve and restore woody plant biodiversity by accounting for landscape attributes.16.
Rita Bastos António T. Monteiro Diogo Carvalho Carla Gomes Paulo Travassos João P. Honrado Mário Santos João Alexandre Cabral 《Landscape Ecology》2016,31(4):701-710
Context
Land-use/land-cover (LU/LC) dynamics is one of the main drivers of global environmental change. In the last years, aerial and satellite imagery have been increasingly used to monitor the spatial extent of changes in LU/LC, deriving relevant biophysical parameters (i.e. primary productivity, climate and habitat structure) that have clear implications in determining spatial and temporal patterns of biodiversity, landscape composition and ecosystem services.Objectives
An innovative hierarchical modelling framework was developed in order to address the influence of nested attributes of LU/LC on community-based ecological indicators.Methods
Founded in the principles of the spatially explicit stochastic dynamic methodology (StDM), the proposed methodological advances are supported by the added value of integrating bottom-up interactions between multi-scaled drivers.Results
The dynamics of biophysical multi-attributes of fine-scale subsystem properties are incorporated to inform dynamic patterns at upper hierarchical levels. Since the most relevant trends associated with LU/LC changes are explicitly modelled within the StDM framework, the ecological indicators’ response can be predicted under different social-economic scenarios and site-specific management actions. A demonstrative application is described to illustrate the framework methodological steps, supporting the theoretic principles previously presented.Conclusions
We outline the proposed multi-model framework as a promising tool to integrate relevant biophysical information to support ecosystem management and decision-making.17.
Mauricio Almeida-Gomes Jayme Augusto Prevedello Daniela Lopes Scarpa Jean Paul Metzger 《Landscape Ecology》2016,31(5):929-937
Context
Landscape ecology has traditionally been taught through theoretical classes or computer labs. On the other hand, field labs have been generally less used as a way of teaching landscape ecology concepts.Objectives
We show that field labs with an inquiry-based approach, where students are involved in the investigation, are feasible for training students in landscape ecology. We evaluated how common field labs are in landscape ecology courses, and also their contribution for student learning.Methods
We evaluated whether field labs are used in landscape ecology courses by scanning available syllabi. We also used outcomes from a course offered in Brazil to show how field labs can be integrated into landscape ecology courses.Results
Only 18.2 % of the 44 syllabi we found had field labs. The case study developed in Brazil showed that field labs allowed students to develop important skills, including the ability to design field studies, choose appropriate scales of analysis, detect ecological patterns, and judge multiple hypotheses.Conclusions
Field labs are still uncommon in landscape ecology courses, but they can be a useful tool to teach landscape ecology concepts and to help students developing the necessary skills to do research. We offer recommendations regarding how to incorporate field labs in landscape ecology courses.18.
Ricardo Teixeira da Silva Luuk Fleskens Hedwig van Delden Martine van der Ploeg 《Landscape Ecology》2018,33(7):1087-1102
Context
Traditionally soils have not received much attention in urban planning. For this, tools are needed that can both be understood both by soil scientists and urban planners.Purpose
The purpose of this paper is to enhance the role of soil knowledge in urban planning practice, through the following objectives: (1) identifying the role soil plays in recent urban plans; (2) analysing the ecosystem services and indicators used in soil science in an urban context; and (3) inferring the main challenges and opportunities to integrate soil into urban planning.Methods
Seven urban plans and reports of world cities that include sustainability goals were analysed using text-mining and qualitative analysis, with a critical view on the inclusion of soil-related concepts. Secondly, the contribution of soil science to urban planning was assessed with an overview of case studies in the past decade that focus on soil-related ecosystem services in urban context.Results
The results show an overall weak attention to soil and soil-related ecosystem services in the implementation and monitoring phases of urban plans. The majority of soil science case studies uses a haphazard approach to measure ecosystem service indicators which may not capture the ecosystem services appropriately and hence lack relevance for urban planning.Conclusions
Even though the most urban plans assessed recognize soil as a key resource, most of them fail to integrate indicators to measure or monitor soil-related functions. There is a need to develop soil-related ecosystem services that can be easily integrated and understood by other fields.19.
Laura R. Musacchio 《Landscape Ecology》2018,33(6):847-860
Context
One of the key challenges for landscape planners is to reframe the meaning of ecosystem services. In this context, alternative concepts such as ecologies have potential to complement ecosystem services when applied to human–nature relationships in changing landscapes.Objectives
The objectives of this article are: (1) to review how landscape planners use major critical approaches to translate the meaning of ecosystem services and (2) to introduce why ecologies provides helpful insights to complement ecosystem services.Methods
A conceptual framework examines how landscape planners use critique to reframe the meaning of ecosystem services. This framework is then revised as a scenario to reframe the meanings of ecologies and ecosystem services.Results
Landscape planners use three critical approaches to reframe the meaning of ecosystem services to advance the understanding of human–nature relationships in changing landscapes. Yet, they identify some important issues and gaps that emerge when it is applied. These issues and gaps are part of the rationale for why landscape planning is at a crossroads with ecosystem services. This rationale is then extended to create a scenario for why a revised conceptual framework is needed for landscape planners to reframe the meanings of ecologies and ecosystem services.Conclusion
The translational challenge of ecologies and ecosystem services is an example of the key role that landscape planners play in developing a deeper understanding of human–nature relationships.20.