An experiment in the planting of Atlantic salmon, Salmo salar L., fry

Abstract. During April 1989, approximately 45000 swim-up Atlantic salmon, Salmo salar L., fry were planted in the upper tributaries of the Lui Water, a tributary of the River Dee, north-east Scotland, at densities of between 2-6 and 3-3/m². Adult salmon are normally excluded from this stream by a waterfall. In mid-August 1989. a 5-km length of stream was surveyed for juvenile salmon and it was estimated that about 230000+ salmon were present. It was estimated that 518% of the original planted fry survived from April to August 1989. A further survey in August 1990 showed that about 3400 1 + salmon remained. Of the 0 + salmon 14·5% survived from August 1989 to August 1990.     

Within-stock variations of life-history traits in juvenile Atlantic salmon (Salmo salar)

Variations in space (geographical location) and time (year) of phenotypic traits linked to life-history (size, growth, condition and sexual maturation) were analysed within the population of Atlantic salmon (Salmo salar L.) 1 + parr of Little Codroy River (southwest Newfoundland). The hydrographic system was divided into 10 zones: 4 for the mainstem and 6 for the tributaries. Despite the small size of the river studied, a highly significant spatial heterogeneity was observed. Within the mainstem, size, growth and rate of maturation of males tended to decrease when progressing upstream. When compared with the tributaries as a whole, the mainstem had smaller salmon juveniles, both at the end of the first winter (mainstem: 67.6 mm; tributaries: 73.3 mm) and at 1 + age (mainstem: 80.6 mm; tributaries: 88.3 mm), and the proportion of maturing fish among 1 + males was lower (mainstem: 48.6%; tributaries: 74.2%). According to the feature considered, from 20% to 70% of the spatial effect was due only to differences between the mainstem and the tributaries as a whole. A strong year effect was also revealed. Life-history traits seemed to fluctuate over time independently from one tributary to another, whereas patterns in their yearly variations were basically consistent among zones in the mainstem. The potential role of genetic and environmental factors in explaining changes in space and time of biological characteristics of parr is discussed. Within a small system such as Little Codroy River, spatio-temporal life-history variations of Atlantic salmon juveniles were most likely driven by environment.     

Road culvert restoration expands the habitat connectivity and production area of juvenile Atlantic salmon in a large subarctic river system

The effects of restoration of impassable road culverts on the distribution of juvenile Atlantic salmon, Salmo salar L., were evaluated in seven small tributaries of the subarctic River Teno system, northernmost Finland/Norway. Restoration enabled the passage of juvenile salmon through the culverts and increased the distribution area of salmon parr in the seven streams by tens or hundreds of metres, depending on the natural slope of the tributary with a total of ≈1 km new area for ascending juveniles. Areas upstream of the culverts were colonised after varying number of years, mostly 2–3, following restoration. Age‐1 and age‐2 parr were the first salmon age groups entering the new territory after removal of the migration barrier. Although the restoration measures were conducted at the downstream outlet area of the culverts only, the connectivity was improved and increased the production area accessible to juvenile salmon. Such removal of migration barriers and securing habitat connectivity by passable culverts should be taken into account in environmental management strategies of river systems safeguarding the essential habitats of salmonid fish.     

Impacts of artificial structures on the freshwater pearl mussel Margaritifera margaritifera in the River Dee,Scotland

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Seasonal stream habitat of adult Sakhalin taimen,Parahucho perryi,in the Bekanbeushi River system,eastern Hokkaido,Japan

Behavioural tracking of endangered adult Sakhalin taimen (Parahucho perryi) by acoustic telemetry was conducted in the Bekanbeushi River system that flows through eastern Hokkaido in 2008–2010. A total of 39 tracked P. perryi showed extensive use of the river system, both upstream and downstream, regardless of the month or year. No tracked adult P. perryi stayed in the ocean for more than 1 day. Some of the fish (20%) dwelled in upstream habitat consistently from spring to autumn, while 40% of individuals showed wide utilisation of the entire upstream and downstream systems. Although 39.4% of tracked fish utilised two or more primary tributaries to the main river, 6.1% used only the main river system. Distinct variability was observed between individuals based on the proportion of time spent in each stream reach (up‐, mid‐, and downstream). A trend was observed in 2008 and 2010 showing that tracked fish moved to the upper stream reaches when water temperatures downstream increased. This trend was not observed in 2009 when the summer water temperature downstream was more than 2 °C below average when compared to 2008 and 2010. Our results suggest that adult P. perryi in the Bekanbeushi River system exhibit high behavioural plasticity, that is, the fish can select habitats based on their own individual requirements. Our results also demonstrate the importance of physical continuity among river reaches both upstream and downstream such that P. perryi does not experience barriers in moving to optimal habitats.     

Modelling the reestablishment of coho salmon (Oncorhynchus kisutch) in Klamath River tributaries after dam removal

The planned removal of four dams on the Klamath River (anticipated 2024) will be the largest river restoration effort ever undertaken on the planet. Dam removal will restore access to >50 km of the Klamath River mainstem for coho salmon, but mainstem habitat may not be suitable for rearing juvenile coho salmon. Instead, small tributaries may provide most rearing habitat for reestablishing coho salmon. We used four approaches to evaluate six Klamath River tributaries above existing dams to assess their potential to support juvenile coho salmon: (1) We measured summer temperature regimes and evaluated thermal suitability. (2) We applied an Intrinsic Potential (IP) model to evaluate large-scale geomorphological constraints on coho salmon habitat. (3) We used the Habitat Limiting Factors Model (HLFM) to estimate rearing capacity for juveniles given current habitat conditions. (4) We developed an occupancy model using data from reference tributaries to predict coho salmon rearing distribution. All six streams had summer temperatures cooler than the mainstem Klamath River. However, five of the streams have barriers that will restrict coho salmon to within 5 km of the confluence with the Klamath River and two were disconnected mid-summer. Despite these constraints, the tributaries will likely produce coho salmon. Most streams had high IP in their lower reaches, the HLFM model estimated a total capacity of 105,000 juvenile coho salmon, and the occupancy model predicted juvenile coho salmon will rear throughout the accessible reaches. Protection and habitat enhancement for these tributaries will be important for coho salmon reestablishment post-dam removal.     

Dams in the Amazon: The importance of maintaining free-flowing tributaries for fish reproduction

1. Free-flowing tributaries are important for the maintenance of fish diversity in dammed systems. In relation to the reproduction of fish species, the role of a free-flowing tributary was evaluated and compared with that of a dammed tributary downstream of large dams in the Madeira River, one of the main tributaries of the Amazon River.
2. Two hypotheses were tested: (i) the densities of the ichthyoplankton differ between the dammed and the free-flowing tributaries; and (ii) the free-flowing tributary contributes a greater diversity of fish larvae species to the assemblage structure of the main stem than the dammed tributary.
3. Fish eggs and larvae were sampled at five sites: one in each tributary (Jamari – dammed – and Machado – free-flowing) and three in the main stem (Madeira River), upstream and downstream from the mouth of each tributary.
4. Fitted Bayesian models showed that the densities both of eggs and larvae were more than twice as high in the free-flowing tributary than in the dammed tributary. The results also indicated that the free-flowing tributary makes a major contribution to the fish assemblage structure of the Madeira River, whereas the dammed tributary does not have a significant influence on the main stem assemblage structure.
5. The results demonstrate the importance of conservation and maintenance not only of the Machado River but also of other free-flowing tributaries in dammed basins, especially those basins with high biodiversity, such as the Amazon. Moreover, this study helps inform the decision-making process regarding the location of new dams, which is critical in fish diversity conservation.

     

Large-scale, differential summer habitat use of three anadromous salmonids in a large river basin in Oregon, USA

The summer distribution of three juvenile anadromous salmonid species was compared in the mainstem sections and nine tributaries of the Upper South Umpqua River Basin, Oregon, USA. Chinook salmon, Oncorhynchus tshawytscha (Walbaum), was found at highest densities in the mainstem and mid-elevation tributaries. Coho salmon, O . kisutch (Walbaum), was essentially absent from the mainstem, but was found at high densities in the low-elevation tributaries. Steelhead trout, O . mykiss (Walbaum), was found in the mainstem and all nine tributaries; the highest densities of this species were in the upper mainstem reaches and high-elevation tributaries. No significant correlations were found between ranks of mainstem and tributary densities among the three species (Spearman's rs; P > 0.05). Observed spatial segregation of basin habitat by these species during summer indicated that protection provided at the level of the river basin will be necessary to assure the continued existence of all stocks.     

Main stem movement of Atlantic salmon parr in response to high river temperature

Atlantic salmon become thermally stressed when water temperatures exceed 23 °C. To alleviate this stress, they behaviourally thermoregulate by moving to patches of cold water, often forming large aggregations. These patches are known as thermal refuges. Given the consensus that climate change will increase temperatures in Atlantic salmon catchments, thermal refuges will become increasingly important in minimising summer mortalities. While the behaviour of salmonids within thermal refuges is fairly well understood, less is known about their main stem movement in search of thermal refuges or its thermal and temporal cues. We detail the results of a PIT telemetry study to investigate the main stem movement behaviour of thermally stressed Atlantic salmon parr in a temperature‐impacted river. PIT antennas placed around two thermal refuges and at the upstream and downstream limits of their surrounding reach were used to record the movement of salmonids during a heatwave. We observed parr movement at the upstream and downstream antennas 135 min prior to the occurrence of the midpoint of aggregations in the thermal refuges, indicating that Atlantic salmon parr make reach‐scale movements in search of cool water prior to aggregating. Logistic regression showed that the number of degree hours >28 °C predicted the occurrence of main stem movement with a good degree of accuracy, indicating that this temperature represents a fundamental threshold causing Atlantic salmon parr to move towards cool water. Such data could be instrumental in allowing river managers to place limits on human activity within rivers, allowing salmon populations time to recover following heat stress events.     

Estimating thermal exposure of adult summer steelhead and fall Chinook salmon migrating in a warm impounded river

Rising river temperatures in western North America have increased the vulnerability of many Pacific salmon (Oncorhynchus spp.) populations to lethal and sublethal risks. There is a growing need to predict and manage such risks, especially for populations whose life history or geography increases the likelihood of warm‐water exposure. We estimated thermal exposure of adult summer steelhead (O. mykiss) and fall‐run Chinook salmon (O. tshawytscha) as they migrated through a warm (often > 20 °C), 157‐km reach of the impounded Snake River, Washington. Archival temperature loggers and radiotelemetry were used to reconstruct thermal histories for 50 steelhead and 21 salmon. Encountered temperature maxima were mostly inside dam fishways and ranged from 15.8 to 24.0 °C (mean = 19.6 °C) for steelhead and from 18.0 to 21.6 °C (19.9 °C) for salmon. Behavioural thermoregulation was evident for ~50% of steelhead and ~30% of salmon in one of three reservoirs. Degree days (DDs) calculated from archival tags ranged from 74 to 973 DDs (median = 130) for steelhead and from 56 to 220 DDs (133) for salmon. Models using river temperature data and fish migration times accurately estimated total DDs for both species except some steelhead with extended thermoregulation. In a predictive application, we estimated exposure for 10,104 steelhead and 9071 Chinook salmon with passive integrated transponder‐tag detections at dams and found considerable DD variability across individuals, species and years. This estimation method, combined with baseline thermal surveys and existing monitoring infrastructure, can help to address long‐standing questions about how warm‐water exposure affects Snake River salmon and steelhead phenology, bioenergetics, physiology, survival and reproductive success.     

Genetic differentiation and gene flow in Atlantic salmon,Salmo salar L.: a case study of the River Shannon system in Ireland

An analysis of the effect of an extensive restocking programme on genetic differentiation and gene flow of the Atlantic salmon, Salmo solar L., in the River Shannon system in Ireland is presented, using allozyme electrophoresis to estimate population differentiation. The observed differentiation in the River Shannon is attributed to random genetic drift, caused by small effective population sizes in some of the tributaries, coupled with the confounding effect of extensive stocking of indigenous fish which were largely derived from a single tributary. The methods of analysis are assessed by applying numerical resampling techniques to determine confidence levels for each of the estimates.     

Changes in the density of introduced bullhead, Cottus gobio L., and its impact on juvenile Atlantic salmon, Salmo salar L., densities in a sub-Arctic salmon river in northern Finland

A newly introduced species, the bullhead, Cottus gobio L., was observed for the first time in the River Utsjoki, a tributary of the River Teno, in 1979. The River Teno is one of the most important Atlantic salmon, Salmo salar L., rivers in Northern Europe and its tributary the River Utsjoki is an important salmon spawning and nursery area. The densities of bullhead were lowest in the areas to which the species has spread most recently and highest in the areas downstream of its introduction point. Densities were markedly lower upstream. Statistical analysis showed that the presence of the bullhead had not affected juvenile salmon densities in the River Utsjoki.     

Tributaries influence recruitment of fish in large rivers

Abstract –  Recent work demonstrates that tributary inputs are important community reorganisation points for river biota; however, no studies have examined the long-term effects of tributary inputs on fish population dynamics. This study examines nearly 40 years of young-of-year (yoy) paddlefish recruitment data to investigate the hypothesis that tributaries influence mainstem fish population dynamics. We generated hydrological variables from daily mean flow data (1965–2007) from an impounded reach of the mainstem Missouri River and from the Niobrara River, a relatively unaltered tributary, using Indicators of Hydrologic Alteration software. Three multiple regression models using natural-log transformed catch per unit effort (log cpue) as the response variable were created using (1) Missouri River-only flow variables, (2) Niobrara River-only flow variables and (3) Missouri River and Niobrara River flow variables. Flow variables from the Niobrara River explain a greater proportion of yoy paddlefish log cpue variability demonstrating that tributaries can positively impact fish population dynamics in altered rivers.     

A comparative study of juvenile salmon density in 20 streams throughout a very large river system in northern Norway

Abstract – The objective was to compare juvenile salmon density in 20 streams throughout the very large River Tana, northern Norway, and to relate variation in density to a suite of environmental factors. Four sampling sites were electrofished in each stream (one at the mouth of the stream and three within the stream) in August and October 2000, 2001, 2002. 0+ salmon parr were absent from seven streams, present at the mouth of 11 streams, and present within only two streams, both of which were probably spawning streams. Older parr migrated upstream into most streams and their highest densities were usually found in streams flowing directly into the spawning habitat in the three largest tributaries of the Tana or the river itself. Juvenile salmon were sparse or absent in streams flowing into smaller tributaries. Most streams with high parr densities were those of dense riparian vegetation that provided terrestrial invertebrates as drift food for the salmon parr, cover for fish, cooler stream temperatures in summer, and food for benthic stream invertebrates that were also a source of food for the parr.     

Behavioural ecology at sea of Atlantic salmon (Salmo salar L.) kelts from a Newfoundland (Canada) river

For migratory fishes such as Atlantic salmon, temporal variation in the utilization of thermal and depth habitats in the marine environment is likely to occur at both broad and fine scales, reflecting both ecological and metabolic factors. To test this, we implanted 26 Atlantic salmon kelts (i.e., post‐spawners) descending Campbellton River, Newfoundland, with data storage tags that recorded date/time, internal and external temperatures, pressure, and light. The salmon that returned to Campbellton River after an average of 62 days at sea were consecutive spawning kelt. Detailed data were recovered from eight of these fish and revealed distinct patterns in their utilization of thermal and depth habitats. Water temperatures experienced over the period at sea showed a wide range for all fish (from <0 to nearly 20°C); however, there were two clear frequency modes; one at 6–7°C and the other at 11–12°C. The cooler mode was indicative of daytime profiles and the warmer mode of night‐time profiles. This corresponded with the depth profiles, which indicated that salmon dove more frequently below 5 m (mean ± SD = 23 ± 0.9 dives per day) and spent less time (approximately 18%) near the sea surface (<1 m) during the day than during the night (4 ± 0.4 dives per night; approximately 45% time <1 m). The diurnal pattern may be indicative of a reliance on vision for feeding at depth and the short duration of dives (<10 min) may be a strategy that allows salmon a metabolic advantage (e.g., swimming capacity) over their prey living constantly at depth in cool waters.     

Uncertainty about estimating total returns of Atlantic salmon, Salmo salar to the Gander River, Newfoundland, Canada, evaluated using a fish counting fence

Abstract  For a number of rivers in Newfoundland, Atlantic salmon, Salmo salar L., is managed in relation to river-specific conservation spawning requirements. One such river is the Gander River, where between 1989 and 1999, the escapement of Atlantic salmon, a major factor in assessing the status of stock, was determined using a fish counting fence. In 2000, the counting fence was discontinued and alternative means of calculating total returns were explored. Regression and simulation methods, using relationships between total returns and salmon counts at an upstream tributary during 1989–99, formed the basis for estimates of returns for 2000, and the uncertainty around estimates. The accuracy of methods is evaluated by retrospective comparisons with actual total returns between 1989 and 1999. Estimates of total returns deviated from the actual by as much as 50–60%, depending on the method. Management implications of the approach are discussed.     

Snorkelling as a method for assessing spawning stock of Atlantic salmon, Salmo salar

Abstract  Reliability of underwater snorkel counts of adult Atlantic salmon, Salmo salar L., was analysed in the tributaries of the River Teno, close to the spawning period. In small (width 5–20 m) rivers, the replicated total counts of salmon were reasonably precise (CV = 5.4–8.5%), while in the medium-sized river (width 20–40 m) the precision of the counting method was considerably lower (CV = 15.3%). Low precision in a medium sized river was also observed in an experiment using marked live fish where the observation efficiency varied between 36.4% and 70.0%. In a small river, the detection efficiency of artificial fish silhouettes (test salmon) was almost perfect in pools (98%), but decreased in rapids (84%). Separate counts of males, females, grilse and large salmon were usually more variable than total counts, indicating that divers were more capable of locating a fish than properly identifying its sex and sea-age. The behaviour of adult salmon was favourable to conduct snorkel counts, as fish normally stayed still, or after hesitating, moved upstream (>95%of the cases) when encountering a diver. The high observation efficiency (>90%) and precision, favourable behaviour of salmon and congruence between snorkel counts and catch statistics in small rivers suggest that reliable data on Atlantic salmon spawning stock can be collected by snorkeling provided that the environmental conditions are suitable and the divers are experienced.     

The age structure and distribution of Atlantic salmon parr, Salmo salar L., in small tributaries and main stems of the subarctic River Teno, northern Finland

Parr of the Atlantic salmon in subarctic River Teno, northern Finland (70°N, 28°E), are found to migrate to small tributaries that are not spawning areas for the adult salmon. The age distribution of the salmon differs significantly between these brooks and the natal rivers, the parr in the brooks being typically 2–4 years old, whereas those in the main rivers were mostly of age 0–2 years. The older fish were found in the uppermost regions of the brooks. The ratio of salmon to brown trout decreases towards the upper reaches of the brooks. At least some of the young salmon overwinter in the brooks. However, the number of fish and the area inhabited diminished towards the autumn in some occasions. It is suggested that this migratory behavior may be an adaptational phenomenon that could cause variation in survival among young salmon in the River Teno.     

Dispersal and tributary immigration by juvenile coho salmon contribute to spatial expansion during colonisation

Anadromous fishes are frequently restricted by artificial barriers to movement such as dams and culverts, so measuring dispersal helps identify sites where improved connectivity could promote range expansion and population viability. We used a combination of DNA‐based parentage analysis and mark–recapture techniques to evaluate dispersal by juvenile coho salmon (Oncorhynchus kisutch) in a population in the initial stages of colonisation following installation of fish passage structures at a previously impassable dam on the Cedar River, WA, USA. The spatial distribution of individuals within maternal families revealed that dispersal was common. Among the offspring of radio‐tagged mothers, 28% were collected outside the spawning reach and dispersed up to 6.3 km (median = 1.5 km). Most juveniles captured in a tributary (Rock Creek, where few adults spawned) had immigrated from the Cedar River and represented many different families. Juvenile dispersal therefore provided a secondary phase of spatial expansion following initial colonisation by adults. Consistent with the condition‐dependent dispersal hypothesis, juveniles that dispersed farther upstream in the tributary were larger than fish collected near the tributary mouth. Overall, the results demonstrated widespread dispersal in a system with low coho salmon densities, and this might increase the rate of population growth if it reduces the effects of local density dependence. By implication, juveniles can take advantage of rearing habitats reconnected through barrier removal, even when such areas are located several kilometres from adult breeding grounds.     

Feeding of Atlantic salmon, Salmo salar L., parr in the subarctic River Teno and three tributaries in northernmost Finland

Abstract— Available food and feeding of Atlantic salmon parr were studied in different parts of a subarctic river in northernmost Finland, the River Teno: in the large main stem, in a major tributary influenced by lakes, and in two minor tributaries. The highest density of benthic organisms was found in an outlet of a lake, but drifting organisms were the most abundant in the small tributaries. Migrant parr that move to the small tributaries from the main stem have better food resources in their new habitat. Plecoptera nymphs were the most important prey for salmon parr early in the spring. Later in the summer dipterans were usually the dominant prey group. In September the importance of Plecoptera was emphasized in the small tributaries and the lake outlet, and that of Trichoptera in other sites. Drifting prey was used more by large than by small parr. The utilization of drifting food appeared to be related to the water temperature rather than to the availability of the drift.