Influence of soil type and indigenous pathogenic fungi on bean hypocotyl rot caused by Rhizoctonia solani AG4 HGI in Cuba

Calcisol, ferralsol and vertisol soils, representative of different bean production areas of Villa Clara province in Cuba, were selected to determine the impact of soil type on bean hypocotyl rot severity caused by Rhizoctonia solani AG4 HGI (isolate CuVC-Rs7). In inoculated autoclaved soil, hypocotyl rot was most severe in calcisol soil, followed by ferralsol soils and then vertisol soils. In inoculated natural soils, disease severity was lower in vertisol and calcisol soils and higher in ferralsol soil, indicating that biological factors are suppressing or stimulating the pathogenic efficiency of R. solani. Native binucleate Rhizoctonia AGF, Sclerotium rolfsii and R. solani AG 4 HGI were isolated from bean plants grown in natural calcisol, vertisol and ferralsol soils, respectively. Subsequent studies about the interaction between these fungi and R. solani indicated that they were involved in the variability of disease severity caused by R. solani. The addition of R. solani AG4 HGI (isolate CuVC-Rs7) into each autoclaved soil inoculated with binucleate Rhizoctonia or S. rolfsii resulted in a reduction of disease severity caused by this pathogen while in soils inoculated with native R. solani AG4 HGI, disease severity increased. Irrespective of fungal interactions, calcisol was always the most disease conducive soil and vertisol the most disease repressive soil. The mechanisms by which native pathogenic fungi could influence disease severity caused by R. solani are discussed.     

Rhizosphere microbial communities associated with Rhizoctonia damage at the field and disease patch scale

Rhizoctonia solani AG-8 is a major root pathogen in wheat (Triticum aestivum L.) systems worldwide and while natural disease suppression can develop under continuous cropping, this is not always the case. The main aim of our work was to elucidate the rhizosphere microbial community underlying a Rhizoctonia suppressive soil (Avon, South Australia) and to investigate how this community may develop in agricultural soils conducive to disease and of different soil type (Galong and Harden, New South Wales). The Avon suppressive soil community included Asaia spp. and Paenibacillus borealis, which were absent from a paired non-suppressive site. At Galong, soil taken from inside and outside disease patches showed no evidence of suppression, and disease suppression could not be transferred from the suppressive soil to the conducive soil from a different soil type and climatic area. 16S rRNA microarray analysis revealed Pseudomonas spp. were significantly more abundant inside than outside three disease patches at Galong. However, a survey of 32 patches across a range of stubble and tillage treatments at a nearby site showed no correlation between Pseudomonas and disease incidence. R. solani levels were significantly lower when stubble was retained rather than burnt or when nutrients (N, P and S) were incorporated with stubble during the non-crop period. Our results suggest soil type is an important factor for suppressive capability and that where specific disease suppression is absent, agronomic practice to increase soil carbon can encourage a non-specific microbial response that limits disease severity.     

Effect of successive cauliflower plantings and Rhizoctonia solani AG 2-1 inoculations on disease suppressiveness of a suppressive and a conducive soil

Disease suppressiveness against Rhizoctonia solani AG 2-1 in cauliflower was studied in two marine clay soils with a sandy loam texture. The soils had a different cropping history. One soil had a long-term (40 years) cauliflower history and was suppressive, the other soil was conducive and came from a pear orchard not having a cauliflower crop for at least 40 years. These two soils were subjected to five successive cropping cycles with cauliflower or remaining fallow in a greenhouse experiment. Soils were inoculated with R. solani AG 2-1 only once or before every crop. Disease decline occurred in all treatments cropped with cauliflower, either because of a decreased pathogen population or increased suppressiveness of the soil. Disease suppressiveness tests indicated that the conducive soil became suppressive after five subsequent cauliflower crops inoculated each cycle with R. solani AG 2-1. Suppressiveness of all treatments was measured in a seed germination test (pre-emergence damping-off) as well as by measuring the spread of R. solani symptoms in young plants (post-emergence damping-off). Results showed that suppressiveness was significantly stimulated by the successive R. solani inoculations; presence of the cauliflower crop had less effect. Suppressiveness was of biological origin, since it disappeared after sterilization of the soil. Moreover, suppressiveness could be translocated by adding 10% suppressive soil into sterilized soil. The suppressive soil contained higher numbers of culturable filamentous actinomycetes than the conducive soil, but treatments enhancing suppressiveness did not show an increased actinomycetes population. The suppressiveness of the soil samples did also not correlate with the number of pseudomonads. Moreover, no correlation was found with the presence of different mycoparasitic fungi, i.e. Volutella spp., Gliocladium roseum, Verticillium biguttatum and Trichoderma spp. The suppressive soil contained a high percentage of bacteria with a strong in vitro inhibition of R. solani. These bacteria were identified as Lysobacter (56%), Streptomyces (23%) and Pseudomonas (21%) spp. A potential role of Lysobacter in soil suppressiveness was confirmed by quantitative PCR detection (TaqMan), since a larger Lysobacter population was present in suppressive cauliflower soil than in conducive pear orchard soil. Our experiments showed that successive cauliflower plantings can cause a decline of the damage caused by R. solani AG 2-1, and that natural disease suppressiveness was most pronounced after subsequent inoculations with the pathogen. The mode of action of the decline is not yet understood, but antagonistic Lysobacter spp. are potential key organisms.     

Persistence and conservation of a consumer-resource metapopulation with local overexploitation of resources

The monophagous flightless weevil Hadramphus spinipennis causes the frequent local extinction of its host plant Aciphylla dieffenbachii through overexploitation. Both species are endemic and restricted to the Chatham Islands group (New Zealand). The weevil is classified as endangered and the plant as a threatened species. As this herbivore-plant system is locally unstable long-term persistence only appears possible via a metapopulation structure in which subpopulations are connected by dispersal. This paper investigates this hypothesis using a spatially explicit model of a consumer population whose resource is patchily distributed. The parameters are adapted to the H. spinipennis-A. dieffenbachii system. Our model includes local population dynamics and dispersal of the consumer, the destruction of host plant patches due to foraging and their regeneration. The results show that the key factor for long-term persistence is the short-range dispersal of the consumer with high mortality during dispersal. Only this highly inefficient dispersal prevents the synchronisation of local dynamics while ensuring sufficient colonisation of regenerated patches. We also show that although synchronisation through spatially correlated environmental fluctuations may be critical for long-term persistence, it cannot replace the strong effects of dispersal. Thus, in a consumer-resource metapopulation with deterministic local extinction, the strength and spatial scale of consumer dispersal in relation to the spatial and temporal scales of the resource patch dynamics (patch destruction and regeneration, number, size and distance of patches) play a vital role for long-term persistence. The consequence for conservation management is that such metapopulations could in fact profit rather than suffer from decreasing connectivity of resource patches.     

Effect of sewage sludge on suppressiveness to soil-borne plant pathogens

The objective of this study was to evaluate the effect of sewage sludge on soil suppressiveness to the pathogens Fusarium oxysporum f. sp. lycopersici on tomato, Sclerotium rolfsii on bean, Sclerotinia sclerotiorum on tomato, Rhizoctonia solani on radish, Pythium spp. on cucumber, and Ralstonia solanacearum on tomato. Soil samples were collected from an experimental corn field in which sewage sludge had been incorporated once a year, since 1999. Sludge from two sewage treatment stations in Brazil (Franca and Barueri, SP) were applied at the rates of one (1N), two (2N), four (4N) and eight (8N) times the N recommended doses for the corn crop. Soil suppressiveness was evaluated by methods using indicator host plants, baits and mycelial growth. There was no effect of sewage sludge on soil suppressiveness to Fusarium oxysporum f. sp. lycopersici in tomato plants. For S. rolfsii, reduction of the disease in bean was inversely proportional to the dose of Franca sludge. The incidence of dead plants, caused by S. sclerotiorum, was directly proportional to sludge doses applied. For R. solani and R. solanacearum, there was a linear trend with reduction in plant death in soils treated with increasing amounts of sludge from Franca. There was an increase in the pathogen community of Pythium spp., proportional to the amounts of sewage applied. The effects of sewage sludge varied depending on the pathogen, methodology applied and on the time interval between the sewage sludge incorporation and soil sampling.     

Effects of interaction of Meloidogyne incognita,Alternaria dauci and Rhizoctonia solani on the growth,chlorophyll, carotenoid and proline contents of carrot in three types of soil

Disease complex of carrot (Daucus carota L.) involving root knot nematode Meloidogyne incognita and two fungi Alternaria dauci and Rhizoctonia solani were studied in three soil types. More plant growth, chlorophyll, carotenoid and proline contents were found in carrot grown in fly ash mix soil than plants grown in sand mix soil and loamy soil. Inoculation of M. incognita, R. solani, and A. dauci reduced plant growth, chlorophyll and carotenoid but increased proline contents. Inoculation of M. incognita 20 days prior to a fungal pathogen caused a greater reduction in plant growth, chlorophyll and carotenoid than fungal pathogen was inoculated prior. Inoculation of A. dauci prior to R. solani or vice versa had a similar effect on plant growth, chlorophyll, and carotenoid. Nematode multiplication and galling was higher in plants grown in sand mix soil followed by loamy soil and fly ash mix soil. Both fungi had adverse effects on galling and nematode multiplication. Blight disease index caused by A. dauci was 3 and crown rot index by R. solani was also recorded 3. These disease indices were 5 when pathogens were inoculated in combinations.     

Suppressiveness of 18 composts against 7 pathosystems: Variability in pathogen response

Compost is often reported as a substrate that is able to suppress soilborne plant pathogens, but suppression varies according to the type of compost and pathosystem. Reports often deal with a single pathogen while in reality crops are attacked by multiple plant pathogens. The goal of the present study was to evaluate the disease suppression ability of a wide range of composts for a range of plant pathogens. This study was conducted by a consortium of researchers from several European countries. Composts originated from different countries and source materials including green and yard waste, straw, bark, biowaste and municipal sewage. Suppressiveness of compost-amended (20% vol./vol.) peat-based potting soil was determined against Verticillium dahliae on eggplant, Rhizoctonia solani on cauliflower, Phytophthora nicotianae on tomato, Phytophthora cinnamomi on lupin and Cylindrocladium spathiphylli on Spathiphyllum sp., and of compost-amended loamy soil (20% vol./vol.) against R. solani on Pinus sylvestris and Fusarium oxysporum f. sp. lini on flax. From the 120 bioassays involving 18 composts and 7 pathosystems, significant disease suppression was found in 54% of the cases while only 3% of the cases showed significant disease enhancement. Pathogens were affected differently by the composts. In general, prediction of disease suppression was better when parameters derived from the compost mixes were used rather than those derived from the pure composts. Regression analyses of disease suppression of the individual pathogens with parameters of compost-amended peat-based mixes revealed the following groupings: (1) competition-sensitive: F. oxysporum and R. solani/cauliflower; (2) rhizosphere-affected: V. dahliae; (3) pH-related: P. nicotianae; and (4) specific/unknown: R. solani/pine, P. cinnamomi and C. spathiphylli. It was concluded that application of compost has in general a positive or no effect on disease suppression, and only rarely a disease stimulating effect.     

Host status of 10 fungal isolates for two nematode species, Filenchus misellus and Aphelenchus avenae

The classification of nematodes in the family Tylenchidae into plant parasites, plant associates or fungal-feeders for community analyses, have been much discussed by nematode ecologists. For an appropriate classification, fungal-feeding habits in the family need to be studied. To evaluate the host status of 10 fungal isolates for Filenchus misellus (Tylenchidae) and Aphelenchus avenae (Aphelenchida, Aphelenchidae), population growth rates, body length and width and sex ratios of the nematodes were measured after 40-day culture on fungal colonies at 25 °C. For F. misellus, the fungi determined as good hosts were two Basidiomycota fungi (Agaricus bisporus, Coprinus cinereus), three Ascomycota fungi (Chaetomium cochlioides, Chaetomium funicola, Chaetomium globosum) and a plant-pathogenic fungus (Rhizoctonia solani) on the basis of nematode population growth rate and female body length. Interestingly Pleurotus ostreatus, known as a predaceous fungus for the other nematodes, was also a good host for F. misellus. While, for A. avenae, good hosts were four plant-pathogenic fungi (Fusarium oxysporum f. sp. conglutinans, F. oxysporum f. sp. cucumerinum, Pythium ultimum, R. solani) and A. bisporus. A. avenae was trapped and preyed upon by Pleurotus hyphae. In F. misellus, males were 7-21% of adults, but the ratio did not correlate significantly with the population growth rate. In A. avenae, no male occurred. Differences in habitat preference between Filenchus and Aphelenchus were explained on the basis of the host status and habitat preferences of the tested fungi.     

Biological control of damping-off caused by Rhizoctonia solani using chitinase-producing Paenibacillus illinoisensis KJA-424

A bacterium having strong chitinolytic activity was isolated from a coastal soil in Korea and identified as Paenibacillus illinoisensis KJA-424 on the basis of the nucleotide sequence of a 16S rRNA gene. By activity staining after SDS-PAGE, three major chitinase bands with chitinolytic activity, approximate molecular weight of 63, 54 and 38 kDa were detected. On co-culture Rhizoctonia solani with KJA-424, abnormal swelling and deformation of R. solani hyphae were observed, where the release of N-acetyl-d-glucosamine was detected. The bacterium suppressed the symptom of damping-off cucumber seedlings caused by R. solani, in greenhouse trial.     

Widespread occurrence of an emerging pathogen in amphibian communities of the Venezuelan Andes

Many recent amphibian declines have been associated with chytridiomycosis, a cutaneous disease caused by the chytrid fungus Batrachochytrium dendrobatidis, but increasing evidence suggests that this pathogen may coexist with some species without causing declines. In the Venezuelan Andes, the disappearance of three anuran species during the late eighties was attributed to B. dendrobatidis. Recently, this pathogen was found to be prevalent in this region on the introduced American bullfrog, Lithobates catesbeianus. As a first step toward assessing the risk of amphibian communities to B. dendrobatidis in this region, we conducted a broad survey across multiple habitat types and an altitudinal gradient spanning over 2000 m. We diagnosed 649 frogs from 17 species using real time and conventional PCR assays, and recorded relevant abiotic characteristics of host habitats. Infection was detected in 10 native species of pond, stream and terrestrial habitats from 80-2600 m, representing nine new host records. L. catesbeianus was the most important reservoir with 79.9% of individuals infected and an average of 2299 zoospores. Among native frogs, Dendropsophus meridensis, an endangered species sympatric with L. catesbeianus, showed the highest infection prevalence and mean zoospore load (26.7%; 2749 zoospores). We did not detect clinical signs of disease in infected hosts; however, species such as D. meridensis may be at risk if environmental stress exacerbates vulnerability or pathogen loads. While surveillance is an effective strategy to identify highly exposed species and habitats, we need to understand species-specific responses to B. dendrobatidis to stratify risk in amphibian communities.     

The invasive plant Solidago canadensis L. suppresses local soil pathogens through allelopathy

Recent studies suggest that invasive plants pose a significant effect on local soil pathogens, which in turn affects on the plant invasion. However, the mechanisms by which invasive plants affect soil pathogens were less well known. We conducted four experiments to test the hypothesis that the invasive plant species Solidago canadensis L. may affect soilborne pathogens through exudation of allelochemicals. Two common soilborne pathogens Pythium ultimum and Rhizoctonia solani were used in the study. Tomato (Lycopersicon esculentum Mill) variety Qianhong No.1 which is sensitive to soil pathogens P. ultimum and R. solani was used to indicate pathogenic activity (in terms of seedling mortality and damping-off). Extracts from root and rhizome of S. canadensis significantly suppressed the growth and pathogenic activity of both pathogens under Petri dish culture and sand culture (experiments 1 and 2), providing direct evidence that S. canadensis exerts allelopathic effects on these pathogens. Subsequently, a pathogen inoculation experiment under sand culture showed that pathogenic activity of both P. ultimum and R. solani was lower under the soil with S. canadensis compared to that under the soil with a common native plant Kummerowia striata (Thunb.) Schindl (experiment 3), implying that invasive S. canadensis had but native K. striata did not have allelopathic effects on soil pathogens through root and rhizome exudation. Finally, results from field soil tests showed that mortality and damping-off rate of tomato seedlings were significantly lower under the soils collected from the fields dominated by S. canadensis than that dominated by native plants at both sampling sites, suggesting that suppression of pathogens also occurs in the field. From the present experimental results we suggest that invasive S. canadensis may acquire spreading advantage in non-native habitat by using “novel weapons” to inhibit not only local plants but also soilborne pathogens.     

间套作防治作物土传枯萎病的研究进展

作物间套作是农业生态系统中常见的一种种植模式。在这种生产模式中,两种或多种作物不仅可以充分利用光、热、水、气、肥等资源,提高单位土地面积的生产力,而且还会影响植物病虫害发生。连作引发的枯萎病是影响很多作物减产的重要原因。通过合理间套作,可以有效地提高作物的抗病能力,以达到自然控制枯萎病的目的。本文首先综述了国内外不同作物间作模式对土传枯萎病的防治效果;其次,从田间小气候改变、寄主形态及生理改变、诱导寄主抗性、养分高效利用、抑制病原菌及土壤微生物多样性方面对控害机制的最新进展进行了总结。在此基础上,对当前间作防控土传病害的局限性进了讨论,并对未来利用不同作物间作防治植物土传病害的研究方向及间作防控土传病害研究需要关注的热点问题进行了展望。     

Evaluation of Bacillus-fortified organic fertilizer for controlling tobacco bacterial wilt in greenhouse and field experiments

Bacterial wilt caused by Ralstonia solanacearum is one of the most serious tobacco diseases worldwide, and no effective control measures are available to date. Three Bacillus isolates (Bacillus amyloliquefaciens SQR-7 and SQR-101 and Bacillus methylotrophicus SQR-29) were obtained from the rhizosphere soil of tobacco. These bacilli exhibited strong inhibition against R. solanacearum and produced indole acetic acid and siderophores. The three antagonistic strains were used to fortify organic fertilizers to produce bioorganic fertilizers (BOFs named for each isolate) for the control of tobacco bacterial wilt. The application of BOFs delayed wilt development and effectively decreased the disease incidence under both greenhouse and field conditions. The tobacco bacterial wilt control efficacy was 44.3%, 70.5%, and 85.1% using BOF101, BOF29, and BOF7 in the greenhouse. Although the control efficacies in the field were lower, the application of BOF7 still achieved 58.0% and 56.2% control efficacies in two years field experiments. The application of bioorganic fertilizer significantly (p < 0.001) repressed the pathogen R. solanacearum in soil in both pot and field experiments, though the abundance of R. solanacearum increased as during the growth period of the tobacco plants. In general, the populations of the antagonistic bacterial strains declined after soil application and as the tobacco plants grew; however, the density of SQR-7 and SQR-29 in the rhizosphere soil remained at a high level (≥10⁶ cfu/g) in the later growth stages. Additionally, the application of bioorganic fertilizers promoted tobacco growth and increased the leaf yield.     

Saprophytic growth of Rhizoctonia solani Kühn AG2-1 (ZG5) in soil amended with fresh green manures affects the severity of damping-off in canola

Plants of the Brassicaceae contain glucosinolates, the hydrolysis products of which inhibit the growth of many soil-borne fungi that cause plant disease. However, amending soil with green manures of these plants gives inconsistent control of several soil-borne diseases, including those caused by Rhizoctonia solani. To identify factors that contribute to this inconsistency we investigated, in the laboratory and in pot experiments in the glasshouse, the saprophytic behaviour of R. solani AG2-1 (ZG5) in a sandy soil amended with various green manures. Fresh material from either Brassica napus var. Karoo, B. napus B1, B. napus B2, B. nigra, Diplotaxis tenuifolia (a brassicaceous weed) and the non-Brassicaceae species, oat (Avena sativa) or lupin (Lupinus angustifolius) was used at 10 or 100 g of fresh material kg⁻¹ of dry soil in Lancelin sand. At 100 g kg⁻¹ the volatiles of all green manures reduced the hyphal growth of R. solani, except for B. napus B1. D. tenuifolia at 100 g kg⁻¹ inhibited the growth and sclerotial formation of R. solani. Most green manures at 10 g kg⁻¹, and at 40% water holding capacity, stimulated the growth of R. solani for up to 3 months and increased the activity of other microbes. R. solani infected the brassicaceous plants when growing and colonized the residues mixed with soil at 10 g kg⁻¹. This inoculum increased the severity of damping-off in canola, by 27%. Disease was particularly severe when the green manure species, except D. tenuifolia and oat, were grown in situ and residues returned to the pot from which they came, before sowing canola. There is a potential hazard in applying green manures of Brassica species as their residues can, under certain conditions, support the saprophytic activity of R. solani which increases damping-off in canola sown in the amended soils.     

Amphibian-killing fungus loses genetic diversity as it spreads across the New World

Emergent infectious diseases are a severe threat to global biodiversity, thus conservation biologists need to understand the emergence, spread, and evolution of pathogens to identify factors driving disease outbreaks. Amphibian chytridiomycosis is a recently emerged amphibian disease caused by the fungus Batrachochytrium dendrobatidis (Bd) that has led to species extinctions and declines worldwide. The spatio-temporal dynamics of pathogen occurrence and disease outbreaks, and comparative genomic analyses of global Bd strains, support the spreading pathogen hypothesis (SPH) with pandemics occurring after introduction of Bd into naïve host populations. Here we used population genetics of the amphibian-killing fungus to test for genetic consequences of pathogen spread. Our population genetic analyses are consistent with the spread of Bd from North to Central America, based on low genetic diversity, reduction in heterozygosity, and increased allele fixation in Bd from recently infected populations. Our findings confirm the spread of Bd in the New World, and indicate that future conservation efforts should focus on: (i) functional consequences (such as changes in pathogenicity) of these genetic changes, and (ii) public education and restrictions on wildlife trade to help slow spread of the pathogen at the invasion front.     

Effects of air pollution on the searching behaviour of an insect parasitoid

To assess the impact of air pollutants on the population dynamics of herbivores, the effects of pollutants on their natural enemies including predators, parasites, and pathogens must be evaluated in addition to direct effects and indirect effects mediated via the host plant. Insect parasitoids are an important group of such natural enemies providing many examples of partial or complete biological control of pest species. This study examined the effects of air pollutants (ozone (O₃), sulphur dioxide (SO₂), and nitrogen dioxide (NO₂)) on the searching behaviour of insect parasitoids. A series of experiments comprising short-term, closed chamber fumigations of O₃, SO₂, and NO₂ (100 nl l^?1) of the braconid parasitoid (Asobara tabida) and aggregated distributions of its host larvae (Drosophila subobscura) was set up. Analysis of chamber results showed that the proportion of hosts parasitised and the searching efficiency of the parasitoids were both significantly reduced with O₃ fumigation, but not with NO₂ or SO₂ fumigations. O₃ fumigation reduced percentage parasitism by approximately 10%. Parasitoids were able to avoid patches with no hosts, both in filtered air controls and when exposed to pollutants. However in the O₃ and NO₂ treatments they appeared less able to discriminate between different host densities, suggesting that pollutants may interfere with the olfactory responses of the parasitoids. These results indicate the potential for air pollutants, particularly O₃, to negatively influence the searching behaviour of parasitoids, and hence reduce the efficiency of natural enemy control of many pest species.     

Interaction between a fungal plant disease,fungivorous nematodes and compost suppressiveness

Abstract

We tested the hypothesis that the fungivorous nematodes Aphelenchoides spp. and Aphelenchus avenae can suppress damping-off caused by Rhizoctonia solani in cauliflower seedlings, and enhance the disease-suppressive effect of compost. In greenhouse experiments, we used two different composts mixed with peat (20% + 80%) and pure peat as growth substrates in growing pots. In each substrate, treatments were: (A) with R. solani and nematodes, (B) with R. solani, (C) with nematodes, (D) control without R. solani or nematodes. Treatment effects were measured as percentage of healthy seedlings 7, 10 and 14 days after start of the experiment. We conducted two different experiments with the treatments A–D; one with Aphelenchoides spp. and one with Aphelenchus avenae. Aphelenchoides spp.+R. solani (treatment A) had 85% healthy plants (= control without addition of fungi (D)) compared with 45% in R. solani without nematodes (B). Aphelenchus avenae suppressed damping-off significantly in all substrates, from almost 100% dead plants in peat with R. solani to 65% healthy plants in R. solani+A. avenae. One compost mixture had an intrinsic suppressive effect on damping-off, while plant health in the other compost mixture was not better than in 100% peat as growing substrate. There were no additive suppressive effects (enhancement) between nematode effects and the suppressive compost. The results demonstrate the ability of fungivorous nematodes to suppress plant diseases. The effects of fungivorous nematodes in combination with compost and other control measures on disease suppression need further attention. The usefulness of fungivorous nematodes in agriculture and horticulture is discussed.     

Identifying the characteristics of organic soil amendments that suppress soilborne plant diseases

Application of organic amendments has been proposed as a strategy for the management of diseases caused by soilborne pathogens. However, inconsistent results seriously hinder their practical use. In this work we use an extensive data set of 2423 studies derived from 252 papers to explore this strategy. First, we assess the capability of a specific organic amendment to control different diseases; second, we investigate the influence of organic matter (OM) decomposition on disease suppressiveness; and third, we search for physical, chemical and biological parameters able to identify suppressive OM. OM was found to be consistently suppressive to different pathogens in only a few studies where a limited number of pathogens were tested. In the majority of studies a material suppressive to a pathogen was ineffective or even conducive to other pathogens, suggesting that OM suppressiveness is often pathogen-specific. OM decomposition in many studies (73%, n = 426) emerged as a crucial process affecting suppressiveness. During decomposition, disease suppression either increased, decreased, was unchanged or showed more complex responses, such as ‘hump-shaped’ dynamics. Peat suppressiveness generally decreased during decomposition, while responses of composts and crop residues were more complex. However, due to the many interactions of contributing factors (OM quality, microbial community composition, pathosystem tested and decomposition time), it was difficult to identify specific predictors of disease suppression. Among the 81 parameters analysed, only some of the 643 correlations showed a consistent relationship with disease suppression. The response of pathogen populations to OM amendments was a reliable feature only for some organic matter types (e.g. crop residues and organic wastes with C-to-N ratio lower than ∼15) and for pathogens with a limited saprophytic ability (e.g., Thielaviopsis basicola and Verticillium dahliae). Instead, population responses of the pathogenic fungi Phytophthora spp., Rhizoctonia solani and Pythium spp. appeared unrelated to disease suppression. Overall, enzymatic and microbiological parameters, rather than chemical ones, were much more informative for predicting suppressiveness. The most useful features were FDA activity, substrate respiration, microbial biomass, total culturable bacteria, fluorescent pseudomonads and Trichoderma populations. We conclude that the integration of different parameters (e.g. FDA hydrolysis and chemical composition by ¹³C NMR) may be a promising approach for identification of suppressive amendments.     

Abiotic soil properties and the occurrence of Rhizoctonia crown and root rot in sugar beet

Since 1993, Rhizoctonia crown and root rot (Rhizoctonia solani AG 2–2 IIIB) has represented an increasing problem for sugar beet production in Germany. Up to now, the outbreak of the infection and the spread of the disease within a field cannot be predicted and effective countermeasures are not available. Although little is known about the living conditions of R. solani in soils, abiotic soil properties are likely to influence the disease occurrence. Investigations were carried out based on 60 pairwise comparisons, each consisting of a disease‐affected and an adjacent nonaffected patch on farmers' fields in 2002 and 2003. Soil samples from the top soil layer (0–30 cm) were collected before harvest, and eight of the most frequently mentioned soil properties potentially influencing Rhizoctonia crown and root rot infection were examined: bulk density, texture, carbonate carbon, potassium, phosphorus, organic carbon, total nitrogen, and pH. The occurrence of the disease was significantly related to the soil C : N ratio, indicating the influence of soil organic matter on the disease occurrence. Examinations of soil thin sections showed that organic‐matter particles in the soil serve as a substrate for R. solani. All other soil physical and chemical properties examined did not differ between the disease‐affected and nonaffected patches and seem to be of minor importance.     

Induction of systemic resistance in rice against sheath blight disease by Pseudomonas fluorescens

Two Pseudomonas fluorescens strains viz., PF1 and FP7 which inhibited the mycelial growth of sheath blight fungus Rhizoctonia solani and increased the seedling vigour of rice plants in vitro were selected for assessing induced systemic resistance (ISR) against R. solani in rice. The Pseudomonas application as a bacterial suspension or a talc-based formulation through seed, root, soil and foliar application either alone or in combination (seed+root+soil+foliar) effectively reduced sheath blight disease incidence, promoted plant growth and ultimately increased yields under glasshouse or field conditions. Efficacy of Pseudomonas strains against R. solani was comparable to that of the fungicide carbendazim, which is normally used in the field to manage the disease. Pseudomonas treatment of rice cv IR50 led to induction of systemic resistance against R. solani, as a result of increase in chitinase and peroxidase activity. However, the extent of increase varied between treatments, Pseudomonas strains used and their duration. Though two chitinase isoforms (35 and 28 kDa) and five peroxidase isozymes (PO1–PO5) were found to be associated with the ISR, 35 kDa chitinase and three peroxidase isozymes (PO3–PO5) were established as the major determinants of ISR. Although a single application of a Pseudomonas strain resulted in ISR, the combined application through all of the four (seed, root, soil and foliar) methods increased the durability of ISR in rice plants. In addition, the Pseudomonas strains produced chitinase in the culture medium. It is presumed that the induced chitinase, peroxidase and bacterial chitinase may be either directly or indirectly involved in the reduction of sheath blight disease development in rice.