Prevalence of spinal abnormalities in Chinook salmon smolt and influence of early rearing temperature and growth rates

Spinal abnormalities can be detected at harvest in around 40% of farmed Chinook salmon in New Zealand. However, whether these abnormalities are present in smolt is unknown. Radiographs of 3,736 smolt were taken immediately prior to transfer to sea water and evaluated for fusions, compressions, vertical shifts, and lordosis, kyphosis and/or scoliosis (LKS). The survey included smolt from two different chilling strategies that had been graded into slow‐ or fast‐growing fish. Overall, 4.34% of Chinook salmon smolt had at least one spinal abnormality, similar to the rates of reported in Atlantic salmon smolt. The rate of abnormality was significantly higher in faster‐growing fish. Fusions were most common with 2.68% of smolt affected. Smolt subjected to longer chilling times had lower rates of fusions. Compressions and vertical shifts were both observed in 1.31% of smolt. Although LKS is the most common abnormality of harvested fish, LKS was detected in just five smolt. The results suggest that some fusions in harvest fish have developed at the time of seawater transfer while LKS develops late in the production cycle. Overall, spinal abnormalities are uncommon in Chinook salmon smolt and may be influenced by chilling times and growth rates.     

Spawning distribution and abundance of a northern Chinook salmon population

Chinook salmon, Oncorhynchus tshawytscha (Walbaum), is an important biological and cultural resource in Alaska, but knowledge about Chinook salmon ecology is limited in many regions. From 2009 to 2012, spawning distribution and abundance of a northern Chinook salmon population on the Togiak River in south‐west Alaska were assessed. Chinook salmon preferred deeper mainstem channel spawning habitat, with 12% (14 of 118 tags in 2009) to 21% (22 of 106 tags in 2012) of radio‐tagged fish spawning in smaller order tributaries. Tributary spawners tended to have earlier run timing than mainstem spawners. Chinook salmon exhibited extended holding and backout (entering freshwater but returning to saltwater before completing anadromous migration) behaviours near the mouth of Togiak River, potentially prolonging their exposure to fishery harvest. Mark–recapture total annual run estimates (2010–2012) ranged from 11 240 (2011) to 18 299 (2012) fish. Exploitation of Chinook salmon ranged from 36% (2012) to 55% (2011) during the study period, with incidental fishery catches near the mouth of the river comprising the largest source of harvest.     

The external phenotype–skeleton link in post‐hatch farmed Chinook salmon (Oncorhynchus tshawytscha)

Skeletal deformities in farmed fish are a recurrent problem. External malformations are easily recognized, but there is little information on how external malformations relate to malformations of the axial skeleton: the external phenotype–skeleton link. Here, this link is studied in post‐hatch to first‐feed life stages of Chinook salmon (Oncorhynchus tshawytscha) raised at 4, 8 and 12°C. Specimens were whole‐mount‐stained for cartilage and bone, and analysed by histology. In all temperature groups, externally normal specimens can have internal malformations, predominantly fused vertebral centra. Conversely, externally malformed fish usually display internal malformations. Externally curled animals typically have malformed haemal and neural arches. External malformations affecting a single region (tail malformation and bent neck) relate to malformed notochords and early fusion of fused vertebral centra. The frequencies of internal malformations in both externally normal and malformed specimens show a U‐shaped response, with lowest frequency in 8°C specimens. The fused vertebral centra that occur in externally normal specimens represent a malformation that can be contained and could be carried through into harvest size animals. This study highlights the relationship between external phenotype and axial skeleton and may help to set the framework for the early identification of skeletal malformations on fish farms.     

Differences in sea migration between wild and reared Atlantic salmon (Salmo salar L.) in the Baltic Sea

The effect of origin, smolt size and year of release on the sea migration pattern of Atlantic salmon (Salmo salar L.) in the Baltic Sea was examined by tagging experiments conducted in 1991–1993 on wild and reared smolts of the Simojoki river salmon stock. The tag recovery data analysed by log-linear models revealed significant differences in both spatial and temporal sea migrations between the wild and reared salmon; the variation was attributed to the year of release and to the origin of the fish. Grilse accounted for the majority of reared returners (76%) but for a smaller proportion (46%) of the wild fish. The effect of smolt size could be studied only in the smolt groups tagged in 1991. Wild fish were more frequently (71%) caught in the Baltic Main Basin than were reared fish (51%) during their second sea year, and the size variation between wild and reared smolts did not explain the recovery site. No such differences in spatial distribution were found during the third sea year. The tagging place (hatchery/trap) of the reared fish did not affect their later sea migration. The differences in sea migration patterns suggest that the wild salmon are more vulnerable to the intensive salmon fishery in the Baltic Main Basin than are reared fish.     

The prevalence of escaped farmed salmon, Salmo salar L., in the River Ewe, western Scotland, with notes on their ages, weights and spawning distribution

Abstract  The prevalence of escaped farmed Atlantic salmon, Salmo salar L., in the River Ewe, western Scotland, was assessed. After the establishment of smolt cages in the catchment and marine cages near the river mouth during 1986–1987, approximately 425 000 parr and smolts, and 122 000 growers have escaped. Between 1987 and 2001, farmed salmon occurred in the rod fishery in 13 of the 15 years, contributing at least 5.8% of the total catch, with a maximum annual frequency of 27.1%. It was estimated that <1% of fish escaping from the marine cages entered the river, but contributed at least 27% of potential anadromous spawners in 1997. Radiotagged, farmed fish in 2001 probably spawned in three subcatchments also used by tagged wild fish. Despite the likelihood of hybridisation there was no change in the median weight or marine age of wild fish, but smolt age decreased significantly ( P  < 0.02). The Ewe has a depleted wild salmon population (≤900 anadromous adults), and further genetic introgression by escapees should be prevented.     

Diel distribution,behaviour and consumption of juvenile Chinook salmon (Oncorhynchus tshawytscha) in a Wilderness stream

Abstract – Understanding population regulation in juvenile salmonids requires distinguishing the effects of intrinsic (size, behaviour) and extrinsic (food, competition) factors. To examine the relative influence of these variables on juvenile Chinook salmon (Oncorhynchus tshawytscha) in the Salmon River drainage (ID, USA), we examined diel differences in foraging microhabitats, behaviour and consumption in two areas with consistent differences in parr‐to‐smolt survival. In lower Big Creek (LBC, high‐survival area) and upper Big Creek (UBC, low‐survival area), we observed fish by snorkelling, recording length, behaviour (foraging rate and aggression) and physical (depth, velocity, cover, temperature) and biotic (density, size and species of neighbouring fish) microhabitat features. Stomach contents were extracted to estimate consumption. Depth and temperature were greater in LBC, where Chinook salmon were significantly larger and present at lower densities. Fish in LBC exhibited higher foraging activity during the day than night, but there were no size differences between day and night foragers. In UBC, a higher density area, foraging behaviour did not change between day and night, although the smallest size classes did not forage nocturnally. Regression models that integrated physical and biotic variables suggested that physical factors influenced foraging in both areas, but competition also affected foraging in UBC. Our results demonstrate that fish from low‐ and high‐survival populations in Big Creek are exposed to different physical and biological influences during their first growth season, which are reflected in different diel foraging behaviours.     

Matrilin-1 expression is increased in the vertebral column of Atlantic salmon (<Emphasis Type="Italic">Salmo salar</Emphasis> L.) individuals displaying spinal fusions

We have previously characterized the development of vertebral fusions induced by elevated water temperature in Atlantic salmon. Molecular markers of bone and cartilage development together with histology were used to understand the complex pathology and mechanism in the development of this spinal malformation. In this study, we wanted to use proteomics, a non-hypothetical approach to screen for possible new markers involved in the fusion process. Proteins extracted from non-deformed and fused vertebrae of Atlantic salmon were therefore compared by two-dimensional electrophoresis (2DE) and MALDI-TOF analysis. Data analysis of protein spots in the 2DE gels demonstrated matrilin-1, also named cartilage matrix protein, to be the most highly up-regulated protein in fused compared with non-deformed vertebrae. Furthermore, real-time PCR analysis showed strong up-regulation of matrilin-1 mRNA in fused vertebrae. Immunohistochemistry demonstrated induced matrilin-1 expression in trans-differentiating cells undergoing a metaplastic shift toward chondrocytes in fusing vertebrae, whereas abundant expression was demonstrated in cartilaginous tissue and chordocytes of both non-deformed and fused vertebrae. These results identifies matrilin-1 as a new interesting candidate in the fusion process, and ratify the use of proteomic as a valuable technique to screen for markers involved in vertebral pathogenesis.     

Influence of river conditions during seaward migration and ocean conditions on survival rates of Snake River Chinook salmon and steelhead

Petrosky CE, Schaller HA. Influence of river conditions during seaward migration and ocean conditions on survival rates of Snake River Chinook salmon and steelhead.
Ecology of Freshwater Fish 2010: 19: 520–536. © 2010 John Wiley & Sons A/S Abstract – Improved understanding of the relative influence of ocean and freshwater factors on survival of at‐risk anadromous fish populations is critical to success of conservation and recovery efforts. Abundance and smolt to adult survival rates of Snake River Chinook salmon and steelhead decreased dramatically coincident with construction of hydropower dams in the 1970s. However, separating the influence of ocean and freshwater conditions is difficult because of possible confounding factors. We used long time‐series of smolt to adult survival rates for Chinook salmon and steelhead to estimate first year ocean survival rates. We constructed multiple regression models that explained the survival rate patterns using environmental indices for ocean conditions and in‐river conditions experienced during seaward migration. Survival rates during the smolt to adult and first year ocean life stages for both species were associated with both ocean and river conditions. Best‐fit, simplest models indicate that lower survival rates for Chinook salmon are associated with warmer ocean conditions, reduced upwelling in the spring, and with slower river velocity during the smolt migration or multiple passages through powerhouses at dams. Similarly, lower survival rates for steelhead are associated with warmer ocean conditions, reduced upwelling in the spring, and with slower river velocity and warmer river temperatures. Given projections for warming ocean conditions, a precautionary management approach should focus on improving in‐river migration conditions by increasing water velocity, relying on increased spill, or other actions that reduce delay of smolts through the river corridor during their seaward migration.     

An ecological–economic model on the effects of interactions between escaped farmed and wild salmon (Salmo salar)

This study explores the ecological and economic impacts of interactions between escaped farmed and wild Atlantic salmon (Salmo salar, Salmonidae) over generations. An age‐ and stage‐structured bioeconomic model is developed. The biological part of the model includes age‐specific life‐history traits such as survival rates, fecundity and spawning successes for wild and escaped farmed salmon, as well as their hybrids, while the economic part takes account of use and non‐use values of fish stock. The model is simulated under three scenarios using data from the Atlantic salmon fishery and salmon farming in Norway. The social welfare is derived from harvest and wild salmon while the economic benefits of fishing comprise both sea and river fisheries. The results reveal that the wild salmon stock is gradually replaced by salmon with farmed origin, while the total social welfare and economic benefit decline, although not at the same rate as the wild salmon stock.     

FISHY FISH? THE ECONOMIC IMPACTS OF ESCAPED FARMED FISH

The escape of cultured fish from a marine aquaculture facility is a type of biological invasion that may lead to a variety of potential ecological and economic effects on native fish. This article develops a general invasive species impact model to capture explicitly both the ecological and economic effects of invasive species, especially escaped farmed fish, on native populations and harvests. First, the possible effects of escaped farmed fish on the growth and stock size of a native fish are examined. Next, a bioeconomic model to analyze changes in yield, benefit distribution, and overall profitability is constructed. Different harvesting scenarios, such as commercial, recreational, and joint commercial and recreational fishing are explored. The model is illustrated by a case study of the interaction between native and farmed Atlantic salmon in Norway. The results suggest that both the harvest and profitability of a native fish stock may decline after an invasion, but the total profits from the harvest of both native and farmed stocks may increase or decrease, depending on the strength of the ecological and economic parameters.     

Incidence and timing of wild and escaped farmed Atlantic salmon (Salmo salar) in Norwegian rivers inferred from video surveillance monitoring

Run timing of escaped farmed Atlantic salmon Salmo salar vs. wild fish was compared by the use of video camera surveillance in 15 rivers over several years, covering 1600 km of the Norwegian coastline (from 58°N to 69°N). Annual runs of wild salmon varied among rivers from <200 fish to more than 10 000. During the surveillance period that for most rivers extended from late May to early October, larger‐sized salmon (fish ≥ 65 cm) generally entered the rivers earlier than small fish. The percentage of salmon identified as escaped farmed fish ranged from 0.1% to 17% across rivers with an average of 4.3%. Estimates of escapees are, however, assumed to represent minimum values because an unknown number of farmed fish passing the video cameras may have been misclassified as wild fish. By the use of a linear mixed model and generalised additive mixed models, it was found that the relationship between run timing and fish length differed significantly between farmed and wild salmon. While small‐sized farmed and wild fish (<65 cm) entered the river at about the same time, wild large salmon returned on average 1–2 weeks earlier than similarly sized escapees. The proportion of large‐sized farmed escapees also increased until late August and decreased thereafter. In contrast, there was a relatively constant and lower proportion of small‐sized escapees throughout the season. Within the surveillance period, there was no evidence of any exceptionally late runs of fish classified as escaped farmed salmon.     

Dominance and predator avoidance in domesticated and wild masu salmon Oncorhynchus masou

ABSTRACT:   Dominance, aggression and predator avoidance were compared among farmed, sea-ranched and wild juvenile masu salmon Oncorhynchus masou in laboratory experiments. Domesticated fish (farmed and sea-ranched), which had been exposed to artificial selection, were not dominant against wild fish in pairwise contests, nor did they show greater aggressiveness. Farmed fish did show greater feeding than wild fish. Under chemically simulated predation risk, farmed fish were more willing to leave cover and feed than wild fish, indicating reduced predator avoidance in the farmed fish. Our results indicate that selection for fast growth (domestication) in masu salmon favors fish that respond to food quickly and ignore predation risk.     

Early marine survival and movements of escaped Atlantic salmon Salmo salar L. juveniles from a land‐based smolt farm during autumn

The aim of this study was to examine early marine survival and movements of simulated escaped Atlantic salmon Salmo salar L. pre‐smolt and smolt from a commercial smolt farm during autumn. One‐third of the pre‐smolt most likely died in the immediate vicinity of the release location, whereas the corresponding mortality for smolts was lower (8.5%) during the 5‐week study period. The surviving pre‐smolt left the farm area after 2–3 days, predominantly along the shore. In contrast, most of the surviving smolts left the farm area during the first day and 54% seemed to move away from the shore and adopt a more pelagic movement pattern than pre‐smolt. The number of surviving fish recorded in the fjord decreased throughout the study period, possibly due to a combination of fish migrating out of the fjord or undetected mortality. Compared with existing knowledge on migration of released farmed smolts during spring, our results indicate less directional and slower movement rates during autumn. Only two of the tagged fish were detected upstream in the rivers following release. A rapid dispersion of escapees indicates that the potential for recapturing escapees is limited unless recapture efforts are initiated immediately after escape. Hence, there is a need for development of technology that detects and prevents escapees to enter the sea.     

Spinal deformation in commercially cultured Atlantic salmon, Salmo salar L.: a clinical and radiological study

A clinical and radiographic study was carried out on 2016 randomly selected Atlantic salmon parr from six farms, which weighed between 55 and 100 g. In addition, 86 fish from six marine farms were similarly studied. Radiographically detectable vertebral lesions were found in 3.8-8.8% of the parr. The changes ranged from a single vertebra showing features, such as demineralization, increased density and slight loss of structure, to fish with multiple vertebrae affected by collapse, fusion and change in intervertebral space that could give rise to lordosis or kyphosis or abnormal vertebrae at several locations. The predominant location was the vertebral region V21-27, and rarely V44 caudad. The radiographic changes in seawater salmon mirrored those found in parr, but vertebrae V35 caudad were more frequently involved. Very few parr were found to have abnormal vertebrae in the peduncle area which suggests that the development of lesions at this location occurs de novo in the seawater phase, given that 'stumpy' fish are most frequent reported deformity at slaughter. It was concluded that minor vertebral change could be detected radiographically in many parr with no observable effect on external morphology. Whether such minor radiographic alteration would proceed to observable morphological change at slaughter weight is open to question.     

Migratory behaviour of adult wild and escaped farmed Atlantic salmon, Salmo salar L., before, during and after spawning in a Norwegian river

The migratory behaviour of adult wild and escaped farmed Atlantic salmon, Salmo salar L., before, during after spawning in the River Namsen, Norway, was analysed using radio telemetry. The fish were caught, radio tagged and released into the fjord between 7 and 25 km from the river mouth. A significantly higher proportion of wild (74%) than farmed (43%) salmon was subsequently recorded in the river. Wild salmon (33%) were more frequently captured in the sea and in rivers than farmed salmon (14%). The migration speed from release to passing a data logger 11 km upstream from the river mouth was not significantly different between wild (20.6 km day^?1) and farmed (19.8 km day^?1) salmon. Wild salmon tagged when water flow in the river was increasing had a significantly higher migration speed than wild salmon tagged when water flow was decreasing. This was not true for farmed salmon. Farmed salmon were distributed significantly higher up the river than wild salmon during spawning, although both types of fish were found together in spawning areas. Thus, there was no geographical isolation to prevent spawning between wild and escaped farmed salmon. Farmed salmon had significantly more and longer up- and downstream movements than wild salmon during the spawning period. Unlike farmed salmon, the number of riverine movements by wild salmon increased significantly when variation in water flow increased. A smaller proportion of wild (9%) than farmed (77%) salmon survived through the winter after spawning.     

A comparison of the swimming and cardiac performance of farmed and wild Atlantic salmon, Salmo salar, before and after gamete stripping

Farmed Atlantic salmon, Salmo salar, frequently escape from the aquaculture industry and interact with wild populations. The impact of these interactions on the wild populations will depend, in part, on differences in their performances. This study compared the swimming and cardiac performance of farmed salmon (Aquagen) with their founder population from the River Namsen both before and after gamete stripping. Cardiac output (CO), heart rate (HR), and stroke volume (SV), which were measured by placing Doppler flow probes around the ventral aorta of the fish, increased with exercise, but the response did not significantly differ between farmed and wild salmon. Similarly, the swimming performance of wild salmon never significantly differed from the farmed salmon. The overall similarity in swimming and cardiac performance between farmed and wild Atlantic salmon observed in the present study suggests that cultured salmon may have the ability to be competitive with the wild salmon in native waters.     

Mercury comparisons between farmed and wild Atlantic salmon (Salmo salar L.) and Atlantic cod (Gadus morhua L.)

Wild and farmed Atlantic salmon ( Salmo salar L.) and Atlantic cod ( Gadus morhua L.) were collected to assess changes in mercury with size in wild vs. farmed fish. Mercury concentrations were compared with Health Canada and United States Environmental Protection Agency consumption guidelines. Lipid dilution of mercury was examined by comparing lipid-extracted (LE) and non-lipid-extracted (NLE) flesh samples in both farmed and wild fish. Mercury concentrations in the flesh and liver of farmed salmon were significantly lower than concentrations in wild salmon of similar fork length ( P <0.001), possibly due to growth dilution in rapidly growing farmed fish. Mercury concentrations were higher in LE tissue compared with NLE ( P <0.05), suggesting lipid dilution of mercury in farmed fish with a high lipid content. Farmed cod, which do not grow more rapidly than wild cod, did not have significantly different flesh and liver concentrations compared with wild cod of similar fork length ( P >0.05). Between species of farmed fish, cod had significantly higher mercury concentrations than salmon ( P <0.05), but neither farmed nor wild salmon mercury concentrations exceeded federal consumption guidelines. These results suggest that rapid growth rates and a high lipid content may play important roles in regulating concentrations of contaminants such as mercury.     

Heritability of mortality in response to a natural pancreas disease (SPDV) challenge in Atlantic salmon,Salmo salar L., post‐smolts on a West of Ireland sea site

Pancreas disease (PD) is an economically important disease of European farmed Atlantic salmon. It can cause significant losses because of morbidity, mortality and reduced production. The disease is caused by an alphavirus, known as salmon PD virus (SPDV) or salmonid alphavirus subtype 1 in Ireland. To examine whether it is possible to improve the natural resistance of Atlantic salmon to SPDV by selective breeding, 6000 genotyped, tagged, pedigreed fish from 150 full‐sib families were exposed to a natural challenge during 2005 in a sea cage on a commercial salmon farm in the West of Ireland. Histopathological and serological examination was performed weekly on a proportion of all moribund fish to determine the onset of the infection and the likely cause of death. Heritabilities and genetic correlations are presented for resistance to a natural PD challenge and smolt input weight. The results indicate that the susceptibility of salmon to SPDV could be reduced by selective breeding based on the survival in a natural challenge to the virus.