High specific activity in low microbial biomass soils across a no-till evapotranspiration gradient in Colorado

The need to identify microbial community parameters that predict microbial activity is becoming more urgent, due to the desire to manage microbial communities for ecosystem services as well as the desire to incorporate microbial community parameters within ecosystem models. In dryland agroecosystems, microbial biomass C (MBC) can be increased by adopting alternative management strategies that increase crop residue retention, nutrient reserves, improve soil structure and result in greater water retention. Changes in MBC could subsequently affect microbial activities related to decomposition, C stabilization and sequestration. We hypothesized that MBC and potential microbial activities that broadly relate to decomposition (basal and substrate-induced respiration, N mineralization, and β-glucosidase and arylsulfatase enzyme activities) would be similarly affected by no-till, dryland winter wheat rotations distributed along a potential evapotranspiration (PET) gradient in eastern Colorado. Microbial biomass was smaller in March 2004 than in November 2003 (417 vs. 231 μg g⁻¹ soil), and consistently smaller in soils from the high PET soil (191 μg g⁻¹) than in the medium and low PET soils (379 and 398 μg g⁻¹, respectively). Among treatments, MBC was largest under perennial grass (398 μg g⁻¹). Potential microbial activities did not consistently follow the same trends as MBC, and the only activities significantly correlated with MBC were β-glucosidase (r = 0.61) and substrate-induced respiration (r = 0.27). In contrast to MBC, specific microbial activities (expressed on a per MBC basis) were greatest in the high PET soils. Specific but not total activities were correlated with microbial community structure, which was determined in a previous study. High specific activity in low biomass, high PET soils may be due to higher microbial maintenance requirements, as well as to the unique microbial community structure (lower bacterial-to-fungal fatty acid ratio and lower 17:0 cy-to-16:1ω7c stress ratio) associated with these soils. In conclusion, microbial biomass should not be utilized as the sole predictor of microbial activity when comparing soils with different community structures and levels of physiological stress, due to the influence of these factors on specific activity.     

Development of pollution-induced community tolerance is linked to structural and functional resilience of a soil bacterial community following a five-year field exposure to copper

Copper (Cu) is accumulating in agricultural soils worldwide creating concern for adverse impacts on soil microbial communities and associated ecosystem services. In order to evaluate the structural and functional resilience of soil microbial communities to increasing Cu levels, we compared a Cu-adapted and a corresponding non-adapted soil microbial community for their abilities to resist experimental Cu pollution. Laboratory soil microcosms were set-up with either High-Cu soil from Cu-amended field plots (63 g Cu m⁻²) or with Low-Cu control soil from the same five-year field experiment. Laboratory treatments consisted of Cu amendments in the presence or absence of pig manure. Microbial activities (soil respiration, substrate-induced respiration, [³H]leucine incorporation), bacterial community structure (terminal restriction fragment length polymorphism, T-RFLP), community-level physiological profiles, and pollution-induced bacterial community tolerance (PICT detected using the [³H]leucine incorporation technique) were monitored for 12 weeks. The High-Cu and Low-Cu soil microbial communities initially exhibited almost identical structure and function and could only be distinguished from each other by their differential Cu tolerance. Experimental Cu pollution inhibited microbial activities, affected bacterial community structure, and induced further bacterial community tolerance to Cu. However, Low-Cu and High-Cu soil microbial communities showed essentially identical responses. Manure amendment did not protect against Cu toxicity and slightly increased Cu bioavailability as measured by a Cu-specific whole-cell bacterial biosensor. Our results indicate convergence of bacterial community structure and function in the High-Cu and Low-Cu soils during the five-year field experiment. We conclude that soil bacterial communities can exhibit structural and functional resilience to a five-year Cu exposure by virtue of their ability to develop Cu tolerance without affecting overall community structure. The observed increased Cu tolerance may involve phenotypic adaptation or selection at the micro-diversity level, for example an increased proportion of Cu-resistant strains within each bacterial species, which go undetected by T-RFLP community fingerprinting. Finally, our results indicate that Cu-dissolved organic matter complexes contribute to microbial toxicity in manure-amended soils implying that free Cu may comprise a poor predictor of metal toxicity.     

Soil moisture and plant residue addition interact in their effect on extracellular enzyme activity

Water availability strongly affects soil microbial activity and community composition. In a laboratory incubation we investigated the combined effect of soil moisture potential (−10 kPa, −135 kPa, and <−1500 kPa) and plant residue addition on soil enzyme activities (protease, β-glucosidase, β-glucosaminidase and exocellulase) and phospholipid fatty acid (PLFA) profiles. Soil respiration was positively correlated with soil moisture potential and significantly increased with the addition of residue. In the unamended soil, enzyme activities were little affected by soil moisture potential, nor did they change much over time. The addition of residue, however, significantly increased enzyme activity at each moisture level. Furthermore, all four enzyme activities were considerably higher in the amended dry soil than in amended samples with a higher moisture potential. In contrast, in the amended dry soil, respiration and microbial biomass were reduced compared to the amended samples with a higher moisture potential. The low microbial biomass in the amended dry soil was mainly due to a decrease in Gram-negative bacteria, while the fungal biomass reached similar levels at all water potentials. Therefore, shifts in microbial community composition alone cannot explain the increased enzyme activities in the dry soil. Other factors, such as increased fungal activity, stronger interactions between enzymes and soil particles due to thinner water films, may have contributed to the observed effects. Our results suggest that under dry conditions, potential enzyme activities may be decoupled from microbial biomass and respiration in the presence of substrates.     

Effects of traditional and biodynamic farmyard manure amendment on yields,soil chemical,biochemical and biological properties in a long-term field experiment

We studied the effects of applications of traditionally composted farmyard manure (FYM) and two types of biodynamically composted FYM over 9 years on soil chemical properties, microbial biomass and respiration, dehydrogenase and saccharase activities, decomposition rates and root production under grass-clover, activity and biomass of earthworms under wheat, and yields in a grass-clover, potatoes, winter wheat, field beans, spring wheat, winter rye crop rotation. The experiment was conducted near Bonn, on a Fluvisol using a randomised complete block design (n=6). Our results showed that plots which received either prepared or non-prepared FYM (30 Mg ha^–1 year^–1) had significantly increased soil pH, P and K concentrations, microbial biomass, dehydrogenase activity, decomposition (cotton strips), earthworm cast production and altered earthworm community composition than plots without FYM application. Application of FYM did not affect the soil C/N ratio, root length density, saccharase activity, microbial basal respiration, metabolic quotient and crop yields. The biodynamic preparation of FYM with fermented residues of six plant species (6 g Mg^–1 FYM) significantly decreased soil microbial basal respiration and metabolic quotient compared to non-prepared FYM or FYM prepared with only Achillea. The biodynamic preparation did not affect soil microbial biomass, dehydrogenase activity and decomposition during 62 days. However, after 100 days, decomposition was significantly faster in plots which received completely prepared FYM than in plots which received no FYM, FYM without preparations or FYM with the Achillea preparation. Furthermore, the application of completely prepared FYM led to significantly higher biomass and abundance of endogeic or anecic earthworms than in plots where non-prepared FYM was applied.     

Soil microbial community as bioindicator of the recovery of soil functioning derived from metal phytoextraction with sorghum

A three-month microcosm study was carried out in order to evaluate: (i) the capacity of sorghum plants to phytoextract Cd (50 mg kg⁻¹) and Zn (1000 mg kg⁻¹) from artificially polluted soil and (ii) the possibility of biomonitoring the efficiency of phytoremediation using parameters related to the size, activity and functional diversity of the soil microbial community. Apart from plant and soil (total and bioavailable) metal concentrations, the following parameters were determined: soil physicochemical properties (pH, OM content, electrical conductivity, total N, and extractable P and K), dehydrogenase activity, basal- and substrate-induced respiration (with glucose and a model rhizodeposit solution, both adjusted to 800 mg C kg⁻¹ DW soil and 45.2 mg N kg⁻¹ DW soil), microbial respiration quotient, functional diversity through community level physiological profiles and, finally, seed germination toxicity tests with Lepidium sativum. Sorghum plants were highly tolerant to metal pollution and capable of reaching high biomass values in the presence of metals. In the first two harvests, values of shoot Cd concentrations were higher than 100 mg Cd kg⁻¹ DW, the threshold value for hyperaccumulators. Nonetheless, in the third harvest, the bioconcentration factor was 1.34 and 0.35 for Cd and Zn, respectively, well below the threshold value of 10 considered for a phytoextraction process to be feasible. In general, microbial parameters showed lower values in metal polluted than in control non-polluted soils, and higher values in planted than in control unplanted pots. As a result of the phytoextraction process, which includes both plant growth and metal phytoextraction, the functioning of the phytoremediated soil, as reflected by the values of the different microbial parameters here determined, was restored. Most importantly, although the phytoextracted soil recovered its function, it was still more phytotoxic than the control non-polluted soil.     

Long-term monitoring of microbial biomass, N mineralisation and enzyme activities of a Chernozem under different tillage management

 We investigated the influence of tillage (conventional, minimum and reduced) on selected soil microbial properties of a fine-sandy loamy Haplic Chernozem over a period of 8 years. The microbial biomass and soil microbial processes were affected mostly by type of tillage and to a lesser extent by the date of soil sampling. Whereas xylanase activity was significantly higher in the 0 to 10-cm soil layer of the reduced and minimum tillage systems within the first year of the experiment (protease and phosphatase activities were significantly higher in the second year), significant treatment effects on microbial biomass, N mineralisation and potential nitrification were observed after a 4-year period. The slow response of substrate-induced respiration to the change in type of tillage may have been due to the differences in the biomass C turnover rates. After a 4-year period, the stratification of the soil microbial biomass within the profile of reduced and minimum tillage systems was probably responsible for the more intensive soil microbial processes near the soil surface compared with conventional tillage. In the 20 to 30-cm layer, N mineralisation, potential nitrification and xylanase activity in the conventional treatment were significantly higher than in the minimum and reduced tillage plots due to buried organic materials. Discriminant analysis underlined the similarity of the enzyme activity patterns in the top layer of the reduced and minimum tillage treatments, and in both layers of the conventional tillage system. The trend towards a significant increase in functional diversity caused by reduced tillage became obvious within the first year of the experiment, and this effect was still manifest after 8 years. All relationships suggested that there were differences in available resources (e.g. organic matter) along the sequence of different tillage systems; this was reflected in part by enhanced enzymatic and microbial activities in the soil layers. In conclusion, this study showed that soils affected by tillage may be classified on the basis of their functional diversity. Therefore, the soil microbial properties chosen for microbiological soil monitoring (microbial biomass, N mineralisation and enzyme activities involved in C, N and P cycling) provide a reliable tool with which to estimate early changes in the dynamics and distribution of soil microbial processes within soil profiles. Received: 3 February 1998     

The adverse effects of soil salinization on the growth of Trifolium alexandrinum L. and associated microbial and biochemical properties in a soil from Iran

The aim of this study was to determine the effects of increasing concentrations of salt solutions (including 0.12, 2, 6, and 10 dS m⁻¹) on the growth of berseem clover (Trifolium alexandrinum L.) and related soil microbial activity, biomass and enzyme activities. Results showed that the dry weights of root and shoot decreased with an increase in the concentrations of salt solutions. Soil salinization depressed the microbiological activities including soil respiration and enzyme activities. Substrate-induced respiration was consistently lower in salinized soils, whereas microbial biomass C did not vary among salinity levels. Higher metabolic quotients (qCO₂) and unaffected microbial biomass C at high EC values may indicate that salinity is a stressful factor, inducing either a shift in the microbial community with less catabolic activity or reduced efficiency of substrate utilization. Acid phosphatase and alkaline phosphatase activities decreased with increasing soil salinity. We found significant, positive correlations between the activities of phosphatase enzymes and plant's root mass, suggesting that any decrease in the activities of the two enzymes could be attributed to the reduced root biomass under saline conditions.     

Comparison of microbiological methods for evaluating quality and fertility of soil

Routine soil testing procedures that are rapid and accurate are needed to evaluate C and N mineralization in agricultural soils in order to determine soil quality and fertility. Laboratory methods were compared for their usefulness in determining soil microbial biomass and potential activity in a Weswood silty clay loam (fine, mixed, thermic Fluventic Ustochrept) subjected to long-term tillage, crop sequence, and N-fertilizer management practices. The methods included basal soil respiration, net N mineralization during a 10-day incubation, soil microbial biomass C with the chloroform fumigation-incubation technique with and without subtracting a control value, soil microbial biomass N with the chloroform fumigation-incubation technique, substrate-induced respiration, and arginine ammonification. All methods were highly correlated with each other and, therefore, appear to adequately reflect soil microbial biomass and potential activity under laboratory conditions. The longer incubation times used with the basal soil respiration, N mineralization, and microbial biomass C and N assays resulted in higher correlations and lower variation among replications compared to the shorter incubation times used with substrate-induced respiration and arginine ammonification. The relatively rapid procedural time (3 h) required for the latter two assays could make these methods more attractive for routine soil testing, although multiple assays on the same sample may be necessary because these methods are less precise than the incubation methods that require 10 days.     

Microbial biomass and activity in soils amended with glucose

Four contrasting soils were amended with glucose at concentrations up to 10 mg g^?1 soil. The soils were incubated at 22°C for 14 days and the biomass determined at various times by chloroform fumigation or substrate-induced respiration. The adenosine triphosphate (ATP) content or the amylase and dehydrogenase activities were also determined. The size of the increases in biomass, ATP content and the enzyme activities was generally related to the amount of glucose added. The initially higher ATP levels quickly declined, and apparent substrate conversion figures up to 84% indicated that substrate-induced respiration overestimated the biomass. There were generally no significant correlations between ATP, biomass or enzyme activities.     

Influence of soil properties on microbial populations, activity and biomass in humid subtropical mountainous ecosystems of India

 Microbial populations, biomass, soil respiration and enzyme activities were determined in slightly acid organic soils of major mountainous humid subtropical terrestrial ecosystems, along a soil fertility gradient, in order to evaluate the influence of soil properties on microbial populations, activity and biomass and to understand the dynamics of the microbial biomass in degraded ecosystems and mature forest. Although the population of fungi was highest in the undisturbed forest (Sacred Grove), soil respiration was lowest in the 7-year-old regrowth and in natural grassland (approximately 373 μg g^–1 h^–1). Dehydrogenase and urease activities were high in "jhum" fallow, and among the forest stands they were highest in the 7-year-old regrowth. Microbial biomass C (MBC) depended mainly on the organic C status of the soil. The MBC values were generally higher in mature forest than in natural grassland, 1-year-old jhum fallow and the 4-year-old alder plantation. The MBC values obtained by the chloroform-fumigation-incubation technique (330–1656 μg g^–1) did not vary significantly from those obtained by the chloroform-fumigation-extraction technique (408–1684 μg g^–1), however, the values correlated positively (P<0.001). The enzyme activities, soil respiration, bacterial and fungal populations and microbial biomass was greatly influenced by several soil properties, particularly the levels of nutrients. The soil nutrient status, microbial populations, soil respiration and dehydrogenase activity were greater in Sacred Grove, while urease activity was greater in grassland. Received: 14 October 1998     

Plant roots and species moderate the salinity effect on microbial respiration,biomass, and enzyme activities in a sandy clay soil

The aim of this study was to determine the effects of plant absence or presence on microbial properties and enzyme activities at different levels of salinity in a sandy clay soil. The treatments involved five salinity levels—0.5 (control), 2.5, 5, 7.5, and 10 dS m^?1 which were prepared using a mixture of chloride salts—and three soil environments (unplanted soil, and soils planted with either wheat or clover) under greenhouse conditions. Each treatment was replicated three times. At the end of the experiment, soil microbial respiration, substrate-induced respiration (SIR), microbial biomass C (MBC), and enzyme activities were determined after plant harvest. Increasing salinity decreased soil microbial properties and enzyme activities, but increased the metabolic quotient (qCO₂) in both unplanted and planted soils. Most microbial properties of planted soils were greater than those of unplanted soils at low to moderate salinity levels, depending upon plant species. There was a small or no difference in soil properties between the unplanted and planted treatments at the highest salinity level, indicating that the indirect effects of plant presence might be less important due to significant reduction of plant growth. The lowered microbial activity and biomass, and enzyme activities were due to the reduction of root activity and biomass in salinized soils. The lower values of qCO₂ in planted than unplanted soils support the positive influence of plant root and its exudates on soil microbial activity and biomass in saline soils. Nonetheless, the role of plants in alleviating salinity influence on soil microbial activities decreases at high salinity levels and depends on plant type. In conclusion, cultivation and growing plant in abandoned saline environments with moderate salinity would improve soil microbial properties and functions by reducing salinity effect, in particular planting moderately tolerant crops. This helps to maintain or increase the fertility and quality of abandoned saline soils in arid regions.     

Interactions between microclimatic variables and the soil microbial biomass

Summary Soil moisture, temperature, microbial substrate-induced respiration and basal respiration were monitored in two plots in an agricultural field from April 30 to September 25, 1987, and in a further two plots from May 26 to August 27, 1988. An attempt to relate biological variables to microclimatic variables was made through the use of correlation analysis. The microbial substrate-induced and basal respiration were both strongly positively correlated with the soil moisture content, and to a lesser extent positively related to soil temperature, especially when partial correlation was used to control for variation in soil moisture. Short-term changes in substrate-induced and basal respiration were correlated with changes in soil moisture but were largely independent of soil temperature. The ratio of basal to substrate-induced respiration (indicating the respiration: biomass ratio and therefore ecosystem stability or persistence) was negatively associated with the soil moisture content and in some instances with soil temperature when partial correlation analysis (correcting for soil moisture variation) was used. This suggests that the climatic conditions which contributed to the lowest ecosystem stability were low temperature, low moisture conditions.     

戊唑醇在土壤中的光降解行为动力学研究

以高压汞灯为光源, 研究了戊唑醇在土壤中的光化学降解行为及各种因素对光降解的影响.结果表明, 戊唑醇在高压汞灯下的光降解符合化学反应一级动力学方程.戊唑醇在不同类型土壤中的光解速度为砂姜黑土>河潮土>红壤>棕壤>紫泥土, 这与土壤有机质和黏粒含量有关;随土壤含水量增加, 戊唑醇的光解速率加快, 主要是因为水分增加了农药分子在土壤中的移动性;中性环境较酸或碱性环境更有利于戊唑醇的光解;当土壤中戊唑醇的浓度为20～100 mg·kg-1时, 其光解速率与浓度呈负相关关系;表面活性剂十二烷基苯磺酸钠和十六烷基三甲基溴化铵对戊唑醇的降解均具有光猝灭作用;不同添加剂量的尿素对戊唑醇的光解几乎均表现出光猝灭作用, 氯化钾则表现为敏化作用.高压汞灯下, 戊唑醇在土壤中降解半衰期为10～22 min.     

Experimental warming effects on the microbial community of a temperate mountain forest soil

Soil microbial communities mediate the decomposition of soil organic matter (SOM). The amount of carbon (C) that is respired leaves the soil as CO₂ (soil respiration) and causes one of the greatest fluxes in the global carbon cycle. How soil microbial communities will respond to global warming, however, is not well understood. To elucidate the effect of warming on the microbial community we analyzed soil from the soil warming experiment Achenkirch, Austria. Soil of a mature spruce forest was warmed by 4 °C during snow-free seasons since 2004. Repeated soil sampling from control and warmed plots took place from 2008 until 2010. We monitored microbial biomass C and nitrogen (N). Microbial community composition was assessed by phospholipid fatty acid analysis (PLFA) and by quantitative real time polymerase chain reaction (qPCR) of ribosomal RNA genes. Microbial metabolic activity was estimated by soil respiration to biomass ratios and RNA to DNA ratios. Soil warming did not affect microbial biomass, nor did warming affect the abundances of most microbial groups. Warming significantly enhanced microbial metabolic activity in terms of soil respiration per amount of microbial biomass C. Microbial stress biomarkers were elevated in warmed plots. In summary, the 4 °C increase in soil temperature during the snow-free season had no influence on microbial community composition and biomass but strongly increased microbial metabolic activity and hence reduced carbon use efficiency.     

Methods for the investigation of metabolic activities and shifts in the microbial community in a soil treated with a fungicide

Samples from a sandy agricultural soil were treated with increasing amounts of a fungicide (Sportak). The effects on the soil microflora were investigated over several weeks by monitoring basal and substrate-induced respiration and basal and substrate-induced heat output. The microbial biomass, metabolic quotient (qCO₂), relative heat output (rqheat), lag phase of substrate use, and calorimetric: respirometric ratio were used as ecophysiological parametèrs. As structural and community-specific parameters, we recorded tryptophan contents and auxin metabolism, and calculated the ratios of fungal to bacterial respiration by antibiotic inhibition of substrate-induced respiration. Sportak either inhibited or stimulated the microbiota, depending on the length of exposure to the fungicide and the amount applied. Mineralization of dead biomass was reflected in increased soil tryptophan contents after the Sportak application. A shortened lag phase demonstrated inhibition and a prolonged lag phase stimulation of substrate use. This changed with the experimental phase. The rqheat and the calorimetric: respirometric ratio proved to be suitable parameters for the detection of stress metabolism (repair processes) in soil microbiota, because thermodynamic processes and catabolic and anabolic metabolism are taken into account at the same time. Following the application of Sportak, indole 3-acetic acid biosynthesis decreased while indole-3-ethanol biosynthesis increased, probably as a result of a transitional community shift from K-strategists towards r-strategists. It was not the fungicide but the formulation (mainly xylol) that damaged the organisms. A shift in the ratio of fungi to bacteria was also observed, suggesting that the bacteria were probably more sensitive to xylol than the fungi.     

Soil respiration is not limited by reductions in microbial biomass during long-term soil incubations

Declining rates of soil respiration are reliably observed during long-term laboratory incubations. However, the cause of this decline is uncertain. We explored different controls on soil respiration to elucidate the drivers of respiration rate declines during long-term soil incubations. Following a long-term (707 day) incubation (30 °C) of soils from two sites (a cultivated and a forested plot at Kellogg Biological Station, Hickory Corners, MI, USA), soils were significantly depleted of both soil carbon and microbial biomass. To test the ability of these carbon- and biomass-depleted (“incubation-depleted”) soils to respire labile organic matter, we exposed soils to a second, 42 day incubation (30 °C) with and without an addition of plant residues. We controlled for soil carbon and microbial biomass depletion by incubating field fresh (“fresh”) soils with and without an amendment of wheat and corn residues. Although respiration was consistently higher in the fresh versus incubation-depleted soil (2 and 1.2 times higher in the fresh cultivated and fresh forested soil, respectively), the ability to respire substrate did not differ between the fresh and incubation-depleted soils. Further, at the completion of the 42 day incubation, levels of microbial biomass in the incubation-depleted soils remained unchanged, while levels of microbial biomass in the field-fresh soil declined to levels similar to that of the incubation-depleted soils. Extra-cellular enzyme pools in the incubation-depleted soils were sometimes slightly reduced and did not respond to addition of labile substrate and did not limit soil respiration. Our results support the idea that available soil organic matter, rather than a lack microbial biomass and extracellular enzymes, limits soil respiration over the course of long-term incubations. That decomposition of both wheat and corn straw residues did not change after major changes in the soil biomass during extended incubation supports the omission of biomass values from biogeochemical models.     

Microbial biomass and activities in partly hydromorphic agricultural and forest soils in the Bornhöved Lake region of Northern Germany

The soil microbial biomass and activity were estimated for seven field (intensive and extensive management), grassland (dry and wet), and forest (beech, dry and wet alder) sites. Three of the sites (wet grassland, dry and wet alder) are located on a lakeshore and are influenced by lake water and groundwater. Four different methods were selected to measure and characterize the microbial biomass. Values of microbial biomass (weight basis) and total microbial biomass per upper horizon and hectare (volume basis) were compared for each site.Fumigation-extraction and substrate-induced respiration results were correlated but dit not give the same absolute values for microbial biomass content. When using the original conversion factors, substrate-induced respiration gave higher values in field and dry grassland soils, and fumigation-extraction higher values in soils with low pH and high water levels (high organic content). Results from dimethylsulfoxide reduction and arginine ammonification, two methods for estimating microbial activity, were not correlated with microbial biomass values determined by fumigation-extraction or substrate-induced respiration in all soils examined. In alder forest soils dimethylsulfoxide reduction and arginine ammonification gave higher values on the wet site than on the dry site, contrary to the values estimated by fumigation-extraction and substrate-induced respiration. These microbial activities were correlated with microbial biomass values only in field and dry grassland soils. Based on soil dry weight, microbial biomass values increased in the order intensive field, beech forest, extensive field, dry grassland, alder forest, wet grassland. However, microbial biomass values per upper horizon and hectare (related to soil volume) increased in agricultural soils in the order intensive field, dry grassland, extensive field, wet grassland and in forest soils in the order beech, wet alder, dry alder. We conclude that use of the original conversion factors with the soils in the present study for fumigation-extraction and substrate-induced respiration measurements does not give the same values for the microbial biomass. Furthermore, dimethylsulfoxide reduction and arginine ammonification principally characterize specific microbial activities and can be correlated with microbial biomass values under specific soil conditions. Further improvements in microbial biomass estimates, particularly in waterlogged soils, may be obtained by direct counts of organisms, ATP estimate, and the use of ¹⁴C-labelled organic substrates. From the ecological viewpoint, data should also be expressed per horizon and hectare (related to soil volume) to assist in the comparison of different sites.     

Effects of land use on the level, variation and spatial structure of soil enzyme activities and bacterial communities

The aim of this study was to evaluate the long-term influence of contrasting rural land use types on the level, plot-scale variation and horizontal spatial structure of decomposition activities and the bacterial community in soil. Experimental data were collected in the southern boreal zone from topsoil layers of adjacent spruce forest, unmanaged meadow (former field) and organically cultivated field that all shared the same soil origin. The forest soil was sampled separately for the organic and mineral layers. A geostatistical design comprising 50 sampling points per plot area of 10 × 10 m² was used. The measured microbiological characteristics included eight different hydrolytic soil enzyme activities involved in C, P and S cycles, bacterial 16S rDNA length heterogeneity profiles (LH-PCR) and total DNA yield as a relative estimate of microbial biomass.Effects of land use were pronounced on both the bacterial community structure and soil enzyme activities. Soil organic matter (SOM) content predicted well the major differences in soil enzyme activities and microbial biomass. Highest enzyme activities were generally found in the forest organic soil whereas the underlying mineral soil showed significantly lower activities with a pattern similar to those of the other mineral soils, especially the cultivated field. Bacterial LH-PCR fingerprints were distinct but at the same time remarkably similar between field and meadow soils whereas the forest organic layer differed clearly from the mineral soils. Within-plot variation of soil microbiological characteristics was best explained by the variation of SOM. Relative standard deviations of soil microbiological characteristics typically decreased in the order: forest organic layer ≈ forest mineral layer > meadow > field. However, bacterial fingerprints showed lowest variation within the meadow. Most of the microbiological variables studied showed no or only weak spatial structure at the scale sampled.     

Microbial and enzyme properties of apple orchard soil as affected by long-term application of copper fungicide

Copper-based fungicides have been applied in apple orchards for a long time, which has resulted in increasing soil Cu concentration. However, the microbial and enzyme properties of the orchard soils remain poorly understood. This study aimed to evaluate the effect of long-term application of Cu-based fungicides on soil microbial (microbial biomass carbon (C_mic), C mineralization, and specific respiration rate) and enzyme (urease, acid phosphatase, and invertase activities) properties in apple orchards. Soil samples studied were collected from apple orchards 5, 15, 20, 30, and 45 years old, and one adjacent forest soil as for reference. The mean Cu concentrations of orchard soils significantly increased with increasing orchard ages ranging from 21.8 to 141 mg kg⁻¹, and the CaCl₂-extractable soil Cu concentrations varied from 0.00 to 4.26 mg kg⁻¹. The soil mean C_mic values varied from 43.6 to 116 mg kg⁻¹ in the orchard soils, and were lower than the value of the reference soil (144 mg kg⁻¹). The ratio of soil C_mic to total organic C (C_org) increased from 8.10 to 18.3 mg C_mic g⁻¹ C_org with decreasing orchard ages, and was 26.1 mg C_mic g⁻¹ C_org for the reference soil. A significant correlation was observed between total- or CaCl₂-extractable soil Cu and soil C_mic or C_mic/C_org, suggesting that the soil Cu was responsible for the significant reductions in C_mic and C_mic/C_org. The three enzyme activity assays also showed the similar phenomena, and declined with the increasing orchard ages. The mean soil C mineralization rates were elevated from 110 to 150 mg CO₂-C kg⁻¹ soil d⁻¹ compared with the reference soil (80 mg CO₂-C kg⁻¹ soil d⁻¹), and the mean specific respiration rate of the reference soil (0.63 mg CO₂-C mg⁻¹ biomass C d⁻¹) was significantly smaller than the orchard soils from 1.19 to 3.55 mg CO₂-C mg⁻¹ biomass C d⁻¹. The soil C mineralization rate and the specific respiration rate can be well explained by the CaCl₂-extractable soil Cu. Thus, the long-term application of copper-based fungicides has shown adverse effects on soil microbial and enzyme properties.     

Fertilization can modify the non-target effects of pesticides on soil microbial communities

A three-month mesocosm experiment was performed to unravel interactions between pesticides (difenoconazole: fungicide, deltamethrin: insecticide, ethofumesate: herbicide) and fertilizers (NPK synthetic fertilizer, compost) regarding the potential non-target effects of pesticides on soil microbial communities. To this aim, pesticides and fertilizers were applied to soil at a rate of 5 mg active ingredient kg⁻¹ DW soil and 185 mg N kg⁻¹ DW soil, respectively. Soil sampling was done after 0, 7, 30, 60 and 90 days of incubation in order to determine pesticide degradation rates and microbial properties: enzyme activities, basal respiration, substrate-induced respiration, potentially mineralizable N, nitrification rate and denitrification potential. By the end of the incubation, difenoconazole, deltamethrin and ethofumesate in non-fertilized soils were degraded by 52, 85 and 93%, with half-lives of 86, 36 and 29 days, respectively. Compost application had a stimulatory effect on difenoconazole and deltamethrin degradation. NPK fertilization led to a 26% increase in ethofumesate half-life in soil. Difenoconazole and deltamethrin caused a short-term inhibitory effect on microbial activity in non-fertilized soils, but not in fertilized soils. A short-term antagonistic effect between NPK fertilization and deltamethrin or ethofumesate presence was found regarding their inhibitory effect on potentially mineralizable N. In compost-fertilized soils, pesticides (especially, ethofumesate) counteracted the stimulatory effect of compost on denitrification potential. Pesticides caused a slight negative effect on the capacity of soils to recycle nutrients that was counteracted at day 90 by the addition of compost, as reflected by the values of the treated-soil quality index. We concluded that fertilizers can modify both pesticide degradation rates and their non-target effects on soil microbial communities.