Earthworm community structure on five English golf courses

A clear understanding of the size and structure of earthworm communities is important to sports turf facilities managers if they are to control the activity of earthworms within the soil. Earthworms are directly linked to a wide range of biogeochemical nutrient cycles, and are frequently described as ecosystem engineers. In this role they assist land managers in maintaining a healthy turf sward. Despite this, earthworm populations in sports turf were frequently suppressed using organochloride based vermicides prior to such compounds being banned in the UK. A survey of earthworm species diversity was carried out over 1 year, using mustard extraction at five golf courses in Bedfordshire and Buckinghamshire, UK, to investigate how species diversity varied temporally and was influenced by the physical environment within different course surfaces. Rank–abundance analysis indicated that four species of earthworm (Aporrectodea rosea, Lumbricus rubellus, Aporrectodea longa and Lumbricus terrestris) were more dominant in the community than any other. The endemic earthworm population number of the five study sites was found to differ significantly (p < 0.01) related to their geographical location, and the most diverse communities were found where the population was greatest. A very strong linear correlation was found between the number of earthworms recovered and the sand content of the soil (r² = 0.97). Significant differences in the size of the earthworm populations were recorded at different times of the year (p < 0.01). A distinct and non-linear relationship between species diversity and microbial biomass C was shown (p < 0.01).     

Interactions between microbial community structure and the soil environment found on golf courses

Approximately 0.6% of the total UK land surface is occupied by golf courses, but little investigation into the biological properties of the soil under this type of amenity turf has been reported. The soil microbiota has a significant role within the majority of nutrient cycles. In order to analyse how golf course management affects the soil microbial community, an investigation of the phenotypic microbial community structure using phospholipid fatty acid (PLFA) analysis was carried out. Principal component analysis of PLFA biomarkers indicated that there were consistent relationships between the tees, fairways and greens and the soil microbial community structure. No conclusive mechanism could be demonstrated in one-way analysis with corresponding physical parameters (P>0.05 in all cases). Cannonical correlation analysis (CCA) using 28 PLFA biomarkers concurrently with 9 physicochemical parameters showed a highly significant relationship on different playing surfaces at all of the golf courses surveyed (P<0.01). The construction and maintenance of specific areas of a golf course, irrespective of geographical location, closely reflect the physicochemical status of the soil microbial habitat.     

Earthworm species composition affects the soil bacterial community and net nitrogen mineralization

Knowledge of the effects of species diversity within taxonomic groups on nutrient cycling is important for understanding the role of soil biota in sustainable agriculture. We hypothesized that earthworm species specifically affect nitrogen mineralization, characteristically for their ecological group classifications, and that earthworm species interactions would affect mineralization through competition and facilitation effects. A mesocosm experiment was conducted to investigate the effect of three earthworm species, representative of different ecological groups (epigeic: Lumbricus rubellus; endogeic: Aporrectodea caliginosa tuberculata; and anecic: Lumbricus terrestris), and their interactions on the bacterial community, and on nitrogen mineralization from ¹⁵N-labelled crop residue and from soil organic matter.Our results indicate that L. rubellus and L. terrestris enhanced mineralization of the applied crop residue whereas A. caliginosa had no effect. On the other hand, L. rubellus and A. caliginosa enhanced mineralization of the soil organic matter, whereas L. terrestris had no effect. The interactions between different earthworm species affected the bacterial community and the net mineralization of soil organic matter. The two-species interactions between L. rubellus and A. caliginosa, and L. rubellus and L. terrestris, resulted in reduced mineral N concentrations derived from soil organic matter, probably through increased immobilization in the bacterial biomass. In contrast, the interaction between A. caliginosa and L. terrestris resulted in increased bacterial growth rate and reduced total soil C. When all three species were combined, the interaction between A. caliginosa and L. terrestris was dominant. We conclude that the effects of earthworms on nitrogen mineralization depend on the ecological traits of the earthworm species present, and can be modified by species interactions. Knowledge of these effects can be made useful in the prevention of nutrient losses and increased soil fertility in agricultural systems, that typically have a low earthworm diversity.     

The efficacy of small-scale conservation efforts, as assessed on Australian golf courses

Habitat remnants on urban green-space areas (i.e. parks, gardens and golf courses) sometimes provide refuge to urban-avoiding wildlife, leading some to suggest these areas may play a role in wildlife conservation if they are appropriately designed and managed. The high densities observed on some green-space areas may however be attributed to external influences. Localised efforts to enhance the habitat value of urban green-space areas may therefore have little more than a cosmetic effect. This study investigated environmental factors influencing bird, reptile, mammal and amphibian diversity on Australian golf courses to assess the efficacy of small-scale conservation efforts. Abundance and species richness did not simply reflect local habitat qualities but were instead, partly determined by the nature of the surrounding landscape (i.e. the area of adjacent built land, native vegetation and the number of connecting streams). Vertebrate abundance and species richness were however, also associated with on-site habitat characteristics, increasing with the area of native vegetation (all vertebrates), foliage height diversity and native grass cover (birds), tree density, native grass cover and the number of hollows (mammals), woody debris, patch width and canopy cover (reptiles), waterbody heterogeneity and aquatic vegetation complexity (frogs). Localised conservation efforts on small land types can benefit urban-avoiding wildlife. Urban green-space areas can provide refuge to urban-avoiding vertebrates provided combined efforts are made at patch (management), local (design) and landscape (planning) scales.     

Methyl-mercury affects microbial activity and biomass,bacterial community structure but rarely the fungal community structure

Monomethyl-mercury is one of the most toxic compounds. Methylation of Hg usually appears under anoxic conditions. In Swiss forest soils, methyl-Hg concentrations of up to 3 μg kg⁻¹ soil dw have been observed, but the impact of methyl-Hg on soil microorganisms have rarely been examined so far. In this study, we investigated the effect of increasing concentrations of methyl-Hg (0, 5, 20, 90 μg kg⁻¹ soil dw) on the microbial communities in various forest soils differing in their physico-chemical properties. Experiments were conducted in microcosms under controlled conditions and the basal respiration (BR), the microbial biomass carbon (MBC) and the bacterial and fungal community structures using T-RFLP-profiling were investigated. BR was significantly affected by methyl-Hg. In general, the BR increased with increasing methyl-Hg concentrations, whereas the MBC was significantly reduced. Bacterial communities were more sensitive to methyl-Hg than fungal communities. In five out of seven soils, the bacterial community structures differed significantly between the treatments whereas the fungal communities did not. The impact of methyl-Hg on the soil bacterial communities was site specific. In one soil, a methyl-Hg concentration of already 5 μg kg⁻¹ soil dw significantly affected the relative abundance of 13% bacterial operational taxonomic units (OTU), whereas in other soils concentrations of even 90 μg kg⁻¹ soil dw rarely affected the abundance of OTUs. In this study, for the first time, the impact of methyl-Hg on soil bacterial and fungal communities in forest soils was assessed. We showed that its impact strongly depends on the physico-chemical conditions of the soil and that bacterial communities were more sensitive to methyl-Hg than fungi.     

Earthworm invasion alters enchytraeid community composition and individual biomass in northern hardwood forests of North America

European earthworms are invading many ecosystems worldwide and fundamentally transform habitats by acting as dominant ecosystem engineers. However, there is little knowledge of the consequences of earthworm invasion on the composition and diversity of native soil organisms. Particularly functionally similar groups, such as enchytraeids (Annelida: Enchytraeidae), may be affected through changes in the chemical and physical properties of the soil, but also due to competition for resources. In 2010–2011, we studied the impact of earthworm invasion on enchytraeids at two sites in the northern hardwood forests of North America: one site within the Chippewa National Forest in northern Minnesota and one site in the Chequamegon-Nicolet National Forest in northern Wisconsin, USA. At each site, three plots were sampled along a transect, representing (1) a non-invaded or very slightly invaded area, (2) the leading edge of earthworm invasion and (3) a heavily invaded area with an established population of the anecic earthworm Lumbricus terrestris (among other species). In total, 29 enchytraeid (morpho)species were identified (some yet to be formally described, several first or second records for the continent); of those 24 occurred at the Minnesota site and 17 at the Wisconsin site. The structure of enchytraeid assemblages differed significantly among the three invasion stages, although this was not equally pronounced at the two sites. Each stage was characterized by one or several indicator species. Mean enchytraeid densities (10,700–30,400 individuals/m²) did not differ significantly among the invasion stages, but were lowest at the leading edge of earthworm invasion at both sites. In the heavily invaded plot at the Minnesota site, the mean enchytraeid density and biomass in L. terrestris middens were significantly higher than in soil in-between the middens. This was due to a pronounced effect of L. terrestris middens in the uppermost 3 cm of soil. Differences in biomass among earthworm invasion stages were most apparent for mean individual biomass. This was significantly higher in the heavily invaded area than at the leading edge or in the non-invaded area at the Minnesota site. Compositional changes of the enchytraeid assemblage are likely to result in changes in the functioning of soil foods webs. Our results suggest that earthworm invasions can cause a loss of native species in soil, including heretofore unknown ones, that might go unnoticed.     

不同细菌饲喂细菌线虫对土壤细菌数量、活性以及群落结构的影响

The effects of bacterial-feeding nematodes on bacterial number, activity, and community composition were studied through a microcosm experiment using sterilized soil inoculated with soil bacteria （soil suspension） and with bacteria and three species of bacterial-feeding nematodes （ Cephalobus persegnis, Protorhabditis filiformis, and Caenorhabditis elegans）. Catalyzed reporter deposition-fluorescence in situ hybridization, CO2 evolution, and denaturing gradient gel electrophoresis （DGGE） of PCR ampli- fied 16S rRNA gene fragments were used to investigate bacterial numbers, antivity, and community composition, respectively. Our results showed that bacterial numbers and activity significantly increased in the presence of bacterial-feeding nematodes, which indicated that bacterial-feeding nematodes had a significant positive effect on soil bacteria. The different nematode species had different effects on bacterial numbers and activity. C. persegnis and P. filiformis, isolated from native soil, increased the bacterial number and activity more than C. elegans. The DGGE analysis results showed that dominant bacterial species significantly differed among the treatments, which suggested that bacterial-feeding nematode species modified the bacterial community composition in soil. Further gene sequence analysis results showed that the dominant bacterial species in this study were gram-negative bacteria. Given the completely same conditions except nematode species, the varied selective feeding behavior of different nematode species was the most likely reason for the altered bacterial community composition. Overall, the alteration of bacterial numbers, activity and community composition resulting from the bacterial-feeding nematodes may ult!mately affect soil ecological functioning and processes.     

Earthworm activity and soil structure changes due to organic enrichments in vineyard systems

 The effect of organic enrichment on earthworm activity and soil structure was studied in two French vineyards, by comparing control and test plots. In each vineyard the organic matter quantitatively increased the abundance and biomass of the earthworm community. These increases were associated with a higher level of species diversity and a higher evenness corresponding to the development of endogeic community. These earthworm community changes were associated with an increase in granular bioturbated areas and in macroporosity in the top soil layer. The micromorphological approach incorporated an original process of image analysis which appeared to be an appropriate method for characterizing pore morphology in this study. The pores when characterized by their size and shape could be related to ecological groups and growth stages of earthworms. Received: 4 August 1997     

Temporal and seasonal change in microbial community structure of an undisturbed,disturbed, and carbon-amended pasture soil

Disturbance and change to C inputs can alter microbial community structure and impact ecosystem function. Particularly in temperate regions, seasonal change also has an effect on microbial communities both directly through climate and indirectly through plant function. The temporal change in microbial communities of an undisturbed pasture, disturbed pasture (similar to a single tillage event) and pasture soil amended with two forms of particulate carbon were monitored over eight consecutive seasons after grass was reestablished. The soil microbial community was assessed by a DNA fingerprinting technique (terminal restriction fragment length polymorphism, TRFLP) of bacterial, fungal and archaeal communities, and also from phospholipid fatty acid (PLFA) analysis. The single disturbance had a significant effect on fungal microbial community structure (by TRFLP) and significantly decreased the fungal:bacterial ratio. Though the change was relatively small, it persisted throughout the sampling period. Nitrate was also higher on the disturbed treatment providing evidence for the theory that changes to fungal:bacterial ratios can alter nutrient cycling and retention. Fungal communities were the most altered by the C amendments, and while bacteria were also affected by the C amendments, seasonal change was a greater cause of variation. Correlation to soil and climatic variables explained more of the total variability for PLFA (78% for all treatments) than bacterial (50%), fungal (35%) and archaeal (14%) restriction fragments. Most climate and soil variables explained significant variation for seasonal patterns in the multivariate community structures but measurements of soil moisture were important for all communities while pH was relatively more important for bacteria, temperature for fungi, and soil C:N ratio for archaea. Autumn was particularly distinct from other seasons for bacteria (less so for the fungal community) and although there was seasonal change in pH suggesting pasture management was a factor, the significant correlation of other soil characteristics suggests that plant physiological changes (most probably root exudates) also played a significant role. The large change in the saprotrophic fungal community due to the particulate C addition but minor seasonal change would tend to suggest that the fungal community may be more responsive to changes in litter inputs rather than root exudates while the reverse is true for bacteria.     

Impact of bovine urine deposition on soil microbial activity,biomass, and community structure

Nitrogen (N) from urine excreted by grazing animals can be transformed into N compounds that have detrimental effects on the environment. These include nitrate, which can cause eutrophication of waterways, and nitrous oxide, which is a greenhouse gas. Soil microbes mediate all of these N transformations, but the impact of urine on microbes and how initial soil conditions and urine chemical composition alter their responses to urine are not well understood. This study aimed to determine how soil inorganic N pools, nitrous oxide fluxes, soil microbial activity, biomass, and the community structure of bacteria containing amoA (nitrifiers), nirK, and nirS (denitrifiers) genes responded to the addition of urine over time. Bovine urine containing either a high (15.0 g K⁺ l^?1) or low salt content (10.4 g K⁺ l^?1) was added to soil cores at either low or high moisture content (hereafter termed dry and wet soil respectively; 35% or 70% water-filled pore space after the addition of urine). Changes in soil conditions, inorganic N pools, nitrous oxide fluxes, and the soil microbial community were then measured 1, 3, 8, 15, 29 and 44 days after urine addition. Urine addition increased soil ammonium concentrations by up to 2 mg g d.w.^?1, soil pH by up to 2.7 units, and electrical conductivity (EC) by 1.0 and 1.6 dS m^?1 in the low and high salt urine treatments respectively. In response, nitrate accumulation and nitrous oxide fluxes were lower in dry compared to wet urine-amended soils and slightly lower in high compared to low salt urine-amended soils. Nitrite concentrations were elevated (>3 μg g d.w.^?1) for at least 15 days after urine addition in wet urine-amended soils, but were only this high in the dry urine-amended soils for 1 day after the addition of urine. Microbial biomass was reduced by up to half in the wet urine-amended soils, but was largely unaffected in the dry urine-amended soils. Urine addition affected the community structure of ammonia-oxidising and nitrite-reducing bacteria; this response was also stronger and more persistent in wet than in dry urine-amended soils. Overall, the changes in soil conditions caused by the addition of urine interacted to influence microbial responses, indicating that the effect of urine on soil microbes is likely to be context-dependent.     

The effect of glyphosate on soil microbial activity,microbial community structure,and soil potassium

The herbicide, glyphosate [N-(phosphonomethyl) glycine] is extensively used worldwide. Long-term use of glyphosate can cause micronutrient deficiency but little is known about potassium (K) interactions with glyphosate. The repeated use of glyphosate may create a selection pressure in soil microbial communities that could affect the nutrient dynamics such as K. The objective of this study was to determine the effect of single or repeated glyphosate applications on microbial and K properties of soils. A 54 day incubation study (Exp I) had a 3 × 5 factorial design with 3 soils (silt loam: fine, illitic, mesic Aeric Epiaqualf) of similar physical and chemical characteristics, that varied in long-term glyphosate applications (no, low, and high glyphosate field treatments) and five glyphosate rates (0, 0.5×, 1×, 2×, and 3× recommended field rates applied once at time zero). A second 6 month incubation study (Exp II) had a 3 × 3 factorial design with three soils (as described above) and three rates of glyphosate (0, 1×, and 2× recommended field application rates applied monthly). For each study microbial properties [respiration; community structure measured by ester linked fatty acid methyl ester (EL-FAME) analysis and microbial biomass K] and K fractions (exchangeable and non-exchangeable) were measured periodically. For Exp I, glyphosate significantly increased microbial respiration that was closely related to glyphosate application rate, most notably in soils with a history of receiving glyphosate. For Exp II, there was no significant effect of repeated glyphosate application on soil microbial structure (EL-FAME) or biomass K. We conclude that glyphosate: (1) stimulates microbial respiration particularly on soils with a history of glyphosate application; (2) has no significant effect on functional diversity (EL-FAME) or microbial biomass K; and (3) does not reduce the exchangeable K (putatively available to plants) or affect non-exchangeable K. The respiration response in soils with a long-term glyphosate response would suggest there was a shift in the microbial community that could readily degrade glyphosate but this shift was not detected by EL-FAME.     

Microbial community composition and activity in different Alpine vegetation zones

In alpine environments, climate change may alter vegetation composition as well as the quantity and quality of plant litter, which in turn may affect microbial community composition and functioning. In this study, we analyzed soil microbial community composition and its activity along a vegetation gradient (900-1900 m above sea level (a.s.l.)) in the Austrian Limestone Alps. Soil pH and C:N ratios were significantly different under different plant communities and ranged from 3.9 to 6.1 and from 29 to 17, respectively. The highest amounts of microbial biomass, estimated by the sum of microbial phospholipid fatty acids (total PLFAs), were found at sites with high pH and low C:N ratio, i.e. in alpine grassland and beech forest sites (3.9 ± 0.05 and 3.4 ± 0.7 μmol per g organic carbon (OC), respectively), and the lowest amounts were found at sites with low pH and high C:N ratio, i.e. sites with high percentage of conifers and acidophilic vegetation (around 2 μmol (g OC)⁻¹). Total and bacterial PLFAs as well as microbial activity (dimethyl sulphoxide reduction) did not show consistent altitudinal trends. The fungal PLFA 18:2ω6,9 was significantly higher in the forest sites (between 9.2 and 6.7 mol%) compared to the shrubland and grassland sites (between 4.5 and 2.3 mol%). A similar trend was found for ergosterol contents. As a consequence, the bacterial to fungal biomass ratio increased significantly from forest sites to shrubland and grassland sites. Expected future upward migration of the tree line in alpine environments in response to climate warming will therefore increase the abundance of fungi in these ecosystems.     

Hydrolase activity, microbial biomass and community structure in long-term Cd-contaminated soils

Long-term effects of high Cd concentrations on enzyme activities, microbial biomass and respiration and bacterial community structure of soils were assessed in sandy soils where Cd was added between 1988 and 1990 as Cd(NO₃)₂ to reach concentrations ranging from 0 to 0.36 mmol Cd kg⁻¹ dry weight soil. Soils were mantained under maize and grass cultivation, or ‘set-aside’ regimes, for 1 year. Solubility of Cd and its bioavailability were measured by chemical extractions or by the BIOMET bacterial biosensor system. Cadmium solubility was very low, and Cd bioavailability was barely detectable even in soils polluted with 0.36 mmol Cd kg⁻¹. Soil microbial biomass carbon (B_C) was slightly decreased and respiration was increased significantly even at the lower Cd concentration and as a consequence the metabolic quotient (qCO₂) was increased, indicating a stressful condition for soil microflora. However, Cd-contaminated soils also had a lower total organic C (TOC) content and thus the microbial biomass C-to-TOC ratio was unaffected by Cd. Alkaline phosphomonoesterase, arylsulphatase and protease activities were significantly reduced in all Cd-contaminated soils whereas acid phosphomonoesterase, β-glucosidase and urease activites were unaffected by Cd. Neither changes in physiological groups of bacteria, nor of Cd resistant bacteria could be detected in numbers of the culturable bacterial community. Denaturing gradient gel electrophoresis analysis of the bacterial community showed slight changes in maize cropped soils containing 0.18 and 0.36 mmol Cd kg⁻¹ soil as compared to the control. It was concluded that high Cd concentrations induced mainly physiological adaptations rather than selection for metal-resistant culturable soil microflora, regardless of Cd concentration, and that some biochemical parameters were more sensitive to stress than others.     

Soil microbial biomass, activity and nitrogen transformations in a turfgrass chronosequence

Understanding the chronological changes in soil microbial properties of turfgrass ecosystems is important from both the ecological and management perspectives. We examined soil microbial biomass, activity and N transformations in a chronosequence of turfgrass systems (i.e. 1, 6, 23 and 95 yr golf courses) and assessed soil microbial properties in turfgrass systems against those in adjacent native pines. We observed age-associated changes in soil microbial biomass, CO₂ respiration, net and gross N mineralization, and nitrification potential. Changes were more evident in soil samples collected from 0 to 5 cm than the 5 to 15 cm soil depth. While microbial biomass, activity and N transformations per unit soil weight were similar between the youngest turfgrass system and the adjacent native pines, microbial biomass C and N were approximately six times greater in the oldest turfgrass system compared to the adjacent native pines. Potential C and N mineralization also increased with turfgrass age and were three to four times greater in the oldest vs. the youngest turfgrass system. However, microbial biomass and potential mineralization per unit soil C or N decreased with turfgrass age. These reductions were accompanied by increases in microbial C and N use efficiency, as indicated by the significant reduction in microbial C quotient (qCO₂) and N quotient (qN) in older turfgrass systems. Independent of turfgrass age, microbial biomass N turnover was rapid, averaging approximately 3 weeks. Similarly, net N mineralization was ∼12% of gross mineralization regardless of turfgrass age. Our results indicate that soil microbial properties are not negatively affected by long-term management practices in turfgrass systems. A tight coupling between N mineralization and immobilization could be sustained in mature turfgrass systems due to its increased microbial C and N use efficiency.     

Earthworm biomass and population structure are negatively associated with changes in organic residue nitrogen concentration during vermicomposting

Vermicomposting is an efficient and environmentally friendly technology to dispose of agricultural organic residues. The efficiency of organic residue decomposition during vermicomposting is directly affected by the biomass and population structure of earthworms. In this study, we investigated how the earthworm biomass and population structure responded to changes in the physicochemical properties of six types of organic residue (cattle dung, herbal waste, rice straw, soybean straw, garden waste, and tea residues) during vermicomposting. Each type of organic residues was placed in a pot with earthworms Eisenia fetida, and the physicochemical properties of the organic residues and earthworm growth dynamics were recorded at 0, 30, 60, and 90 d of vermicomposting. The biomass and population structure of earthworms were stable or increased in rice straw, garden waste, and cattle dung within 60 d of vermicomposting, whereas in tea residues and herb waste, very little earthworm activity (3 adults and 2 cocoons) was recorded on day 30. Among the physicochemical parameters, the substrate C/N ratio was negatively correlated with earthworm growth dynamics. Decomposing organic residues showed higher NH₄⁺-N and NH₃^--N concentrations but a lower total organic carbon content, which negatively affected earthworm growth and reproduction. We recommend that chemical properties of vermicomposting systems should be monitored regularly. At the threshold levels of decomposing organic residue NH₄⁺-N and NH₃^--N concentrations, earthworms should be removed and the vermicompost can be harvested. Small- and large-scale farmers thus need to monitor the physicochemical properties of vermicompost to sustain active earthworm populations.     

Ramifications of crop residue loading for soil microbial community composition,activity and nutrient supply

Variable results have been reported on the effects of crop residue loads on soil microbial properties. We investigated changes in soil bacterial composition, β-glucosidase enzyme activity and nutrient bioavailability in response to wheat residue loading. The treatments included three levels of above-ground wheat residues (removed, retained or supplemented), with or without fertilizer N. Bacteroidetes, Firmicutes and Verrucomicrobia (the first two are copiotrophs) were less abundant where residues were removed than where residues were retained or supplemented, but the reverse was true for Actinobacteria, Cyanobacteria, Chloroflexi and Nitrospirae (all oligotrophs, although some Actinobacteria can be copiotrophic). Actinobacteria were also less abundant where fertilizer N was applied, and the abundances of their genera (including Arthrobacter and Mycobacterium) increased where residues were removed, confirming that they were oligotrophic in this study. β-diversity showed similar differences in the bacterial community structures because of residue management, but α-diversity was not affected by residue management or N fertilizer. β-glucosidase enzyme activities increased as C inputs increased with residue manipulation and N fertilizer. The enzyme activities increased with increasing residue loading in the 0–15 cm soil depth, but decreased with soil depth. Soil K supply increased with increasing residue loading, but nitrate-N supply was highest with residue retention. These results demonstrate remarkable resilience of soil microbial functioning under a wide range of crop residue inputs, without adverse effects on enzyme activity attributable to inorganic N fertilizer. The increasing β-glucosidase activity with increasing residue loading probably explains why crop residue return does not always increase soil C stocks.     

Earthworm composition,diversity and biomass under three land use systems in south-eastern Australia

In south-eastern Australia, strips of planted native trees and shrubs (shelterbelts) are frequently established to restore ecosystem services altered by agriculture. Despite their wide use, little is known about the effects of establishing shelterbelts on soil macro invertebrates, especially earthworms, which are of major importance in soil processes. We assessed earthworm composition, diversity and biomass in three land use systems: native shelterbelts dominated by Acacia and Eucalyptus species, agricultural pastures and native remnant woodland fragments dominated by Eucalyptus blakelyi and/or Eucalyptus melliodora. Earthworm communities differed significantly among systems, with abundance, biomass and diversity greatest under pasture. Within shelterbelts we saw a shift from high earthworm biomass and density to low with increasing time after establishment. Soil edaphic variables did not correlate strongly with earthworm biomass or density, but were correlated with earthworm community composition. Overall the introduction of native woody vegetation was associated with a decline in density and biomass of earthworms, including a decrease in the relative abundance of exotic species. As such shelterbelts can be used to promote native earthworm relative abundance, which may be important for local diversity, soil function and landscape connectivity.     

Land-use and management practices affect soil ammonia oxidiser community structure,activity and connectedness

Factors affecting community structure and connectivity within systems are crucial for provision of microbial ecosystem-services (e.g., soil nitrogen cycling), but what these factors are and how they are affected by land-use and management is poorly understood. Biogeochemical cycles are disrupted in agricultural-systems, providing an excellent opportunity to investigate the roles of management and land-use in shaping microbial communities and ecosystem function. We investigated soil ammonia oxidisers under different cropping practices and within a nearby grassy woodland; representing a gradient of physical/chemical disturbance. Land-use and management practices resulted in significant differences in community structure. Major differences in system connectivity were observed between land-uses, but not within management practices, indicating that land-use change is the major driver of ecosystem change, rather than management within land-uses. Agricultural ammonia oxidiser communities appeared to be less well connected and rely less on biotic interactions than those in natural systems, perhaps a reflection of the extent to which natural feedback loops are disturbed in managed systems. Smaller, but significant, differences were also evident between management treatments. Despite differences in community structure and connectivity there was, however, no significant effect on potential N-cycle rates, indicating that although land-use and management impacts may drive community changes, these do not necessarily translate into changes in functional capacity.     

Impact of sulfadiazine and chlorotetracycline on soil bacterial community structure and respiratory activity

Veterinary medicines enter agricultural soils by the use of animal excrements as fertilizers. To study their impact on soil bacterial communities, microcosms containing orthic luvisol soil were spiked with the antimicrobial agents sulfadiazine (SDZ) and chlorotetracycline (CTC) at three different concentrations (1, 10, 50 mg kg⁻¹ soil) and incubated for 48 days at 20 °C. The impact on the microbial respiratory activity was measured continuously in a respirometer (Sapromat). Changes in bacterial community structure were visualized by means of PCR-denaturing gradient gel electrophoresis (DGGE) of 16S rDNA derived from soil samples after 1, 7, 11 and 48 days. Additionally, growth inhibitory effects of SDZ and CTC on bacteria previously isolated from the same soil were tested in agar diffusion tests. In microcosms with soil and antibiotics only, no effects could be observed, either on respiratory activity or on bacterial population structure. Therefore, further incubations were conducted in the presence of an additional assimilable carbon source (5 g glucose kg⁻¹ soil). In the presence of glucose, SDZ affected soil respiration as well as the bacterial community structure: Additional bands appeared and some bands already visible at the beginning of incubations increased in intensity. A clear relationship between SDZ concentrations and changes in DGGE patterns became visible. During 48 days of incubation, changes in DGGE patterns were minimal in microcosms with 50 mg SDZ kg⁻¹soil indicating an inhibition of strains, which were capable of growing on glucose in the presence of lower SDZ concentrations. Only a few soil bacterial isolates (5 out of 47 strains tested) were weakly inhibited by SDZ in agar diffusion disk tests. Contrastingly, CTC inhibited growth of 12 soil bacterial isolates significantly in disk tests, but no effects on soil respiration and bacterial community structure could be observed. In the presence of the soil matrix the growth inhibitory potential of CTC decreased due to adsorption or complexation. This was confirmed in growth inhibition experiments with soil suspensions and time-dependent sampling.     

Plant community composition affects the biomass, activity and diversity of microorganisms in limestone grassland soil

The diversity and functional type of plants can affect the microbial biomass in the soil, its respiratory activity and the diversity of its bacterial population. We have studied these effects in microcosms of reconstituted limestone grassland containing (i) a 12‐species mixture of graminoids and forbs, (ii) a monoculture of the sedge Carex flacca, (iii) a monoculture of the grass Festuca ovina, and (iv) similar soil without plants. Microbial biomass was significantly greater in soil under monocultures of F. ovina than in the other microcosms. Basal respiration was largest in the F. ovina and mixed‐species treatments where values were more than double those in the C. flacca and bare soil microcosms. The basal respiration was strongly linearly related to plant productivity (r = 0.89). Analysis of the active bacterial population by denaturing gradient gel electrophoresis of 16S rRNA revealed its diversity to be significantly greater in the C. flacca and bare soil treatments than in the F. ovina or mixed‐species microcosms. This suggests that the functional type of plants has a strong influence on the composition of the bacterial community. We hypothesize that the discriminating functional attribute leading to a reduction of bacterial diversity in these microcosms was the presence in the F. ovina and mixed‐plant communities of an active arbuscular–mycorrhizal mycelium that is absent from bare soil and monocultures of C. flacca.