Population viability and perturbation analyses to support recovery of imperilled Eastern Sand Darter (Ammocrypta pellucida)

Small‐bodied freshwater fishes are often understudied, with the result that data gaps create uncertainties that can complicate and constrain conservation strategies aimed at species recovery. Use of matrix models and perturbation population viability analyses (PVA) are ideally suited for use in studying the consequences of life‐history parameter variation and environmental stochasticity to better understand the fate of threatened small‐bodied fishes. We use data for Eastern Sand Darter (Ammocrypta pellucida) populations from the Thames River, Canada, to explore the consequences of life‐history uncertainties such as age at maturation, multiple clutch sizes and age‐specific fertility for population recovery in this species. Environmental stochasticity acting on all life‐history parameters was found to pose significant risks for the continued viability of lower Thames River populations, with significant chances of local extinction predicted under current conditions. The intrinsic rate of population increase was most sensitive to 0+ survival rates, clutch size and clutch number. As demonstrated here, population models can successfully provide a means of exploring the population dynamics of small‐bodied fishes and can inform managers of risks posed by factors acting on life‐history parameters to affect continued population viability. Management actions for Eastern Sand Darter should focus on strategies designed to ensure successful spawning and improvement of 0+ survival rates, through programmes aimed at the protection, enhancement or recovery of additional spawning and juvenile rearing habitats.     

Quantifying allowable harm in species at risk: application to the Laurentian black redhorse (Moxostoma duquesnei)

• 1. When a species is identified for conservation, often the only way to effect recovery is to reduce the harm imposed by stressors threatening the survival of the species. Ideally all threats would be removed; however, this is often not feasible or practical. Within this context, a demographic approach is presented to assess how much human‐induced harm could be allowed without impairing the persistence of the species. Harm is defined as a negative perturbation that can target one or more vital rates and life stages simultaneously.
• 2. Allowable harm, defined as a level of harm that will not jeopardize survival or recovery, will be a function of the vital rates affected by human actions, the sensitivity of population growth to changes in these vital rates (their elasticities), the population growth rate prevailing before harm occurs, and the set of demographic parameters considered safe for long‐term persistence. This life‐history based approach requires minimal data, can link demography with habitat‐explicit information, is flexible enough to encompass complex life histories, and follows a precautionary approach.
• 3. Quantification of allowable harm could be applied to any species at risk. This approach is introduced by applying it to a Canadian population of a freshwater fish, the black redhorse (Moxostoma duquesnei), demonstrating that in the absence of habitat constraints population dynamics of this species are most sensitive to the survival of young adults, but population fitness is particularly sensitive to the loss of habitat used by young‐of‐the‐year fish under current levels of habitat supply.

Copyright © 2009 John Wiley & Sons, Ltd.     

Malignant melanoma of brown bullhead (Ameiurus nebulosus) in Lake Memphremagog,Vermont/Quebec

In 2012, brown bullhead (Ameiurus nebulosus) with large, raised, black growths were first reported from multiple areas within the Vermont portion of Lake Memphremagog. Subsequent surveys conducted from 2014 to 2017 at two sites within the lake indicated a prevalence of 30% in adult brown bullhead 200 mm and above total length. These lesions ranged from slightly raised smooth black areas to large nodular areas on the body surface and fins and within the oral cavity. Microscopically, these lesions were determined to be malignant melanoma with invasion into surrounding hypodermis, skeletal muscle and bone as well as metastases to gill, ovary and intestine. Liver neoplasms were also observed in 8% of the bullhead collected from Lake Memphremagog in 2015. Neither skin nor liver neoplasms were noted in Ticklenaked Pond, a site used for comparison.     

Response of a gorgonian (Paramuricea clavata) population to mortality events: recovery or loss?

• 1. During late summer 1999 and 2003 two mass mortality events affected the population of the slow growing, long‐lived Mediterranean gorgonian Paramuricea clavata living in the Gulf of La Spezia (Italy).
• 2. The population was monitored for three years after the mortality events. Availability of pre‐event data (1998) allowed comparison of population density and population size structure of the healthy population with those recorded in the three years following the mortality events.
• 3. In 1998, before the two mass mortality events, mean colony density was 33.3 ± 3.7 colonies m^?2 and had fallen to 6.7 ± 1.9 colonies m^?2 in 2004.
• 4. In the post‐event period the population size structure changed and the modal class of colonies shifted from 16–21 cm to 6–15 cm height.
• 5. In 2004 mortality affected 75 ± 6.4% of colonies. A significant, positive correlation between the extent of damage and colony size was found throughout the monitoring period.
• 6. In the three years following the two mortality events, a small increase in density of recruits and of older undamaged colonies was recorded suggesting that the population was slowly recovering.
• 7. The bathymetric distribution of P. clavata straddles the summer thermocline making this population particularly sensitive to temperature increases. The lack of deeper colonies (less exposed to warming) and the geographical isolation of this population is likely to prevent any substantial external larval supply.
• 8. An increased frequency of mass mortality events associated with ever increasingly high temperature events represent a considerable threat to the persistence of a P. clavata population in the Gulf of La Spezia.

Copyright © 2007 John Wiley & Sons, Ltd.     

Modelling the population viability of a threatened amphibian with a fast life‐history

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Predicting non‐native fish dispersal under conditions of climate change: case study in England of dispersal and establishment of pumpkinseed Lepomis gibbosus in a floodplain pond

Predictions of future climate change include shifts in patterns of precipitation, evapotranspiration and water run‐off, resulting in increased periods of drought as well as variability and intensity of rainfall events. In the United Kingdom, the non‐native North American sunfish, pumpkinseed Lepomis gibbosus (L.), is expected to benefit from these changes. We examine how hydrological variability induced by predicted changes in climate will affect the dispersal and spread of pumpkinseed in England by: (i) determining the relationship between discharge regime and pumpkinseed propagule pressure; (ii) examining a newly‐established pumpkinseed population following a flood event in 2007; and (iii) comparing the growth and life‐history traits of this new population with fish collected from the source population to demonstrate how the pumpkinseed's life‐history plasticity contributes to its success as a coloniser. Using Bayesian modelling, we determined that the number of pumpkinseed escapees is likely to increase with increasing discharge. The newly‐established pumpkinseed population showed fast juvenile growth, early age at maturity and small size at maturity. These traits differed significantly from the source population, specifically total length (TL) means at ages 1 and 2 were significantly greater in the new population, whereas TL at age 4 was significantly greater in the source population, and a significantly higher proportion of mature females were found at smaller size classes in the newly established pumpkinseed population. This study demonstrates the potential link between hydrological variability (current and future) and the dispersal of non‐native pumpkinseed, leading to the establishment of new populations.     

Intra‐population variability of life‐history traits and growth during range expansion of the invasive round goby,Neogobius melanostomus

Abstract Fish can undergo changes in their life‐history traits that correspond with local demographic conditions. Under range expansion, a population of non‐native fish might then be expected to exhibit a suite of life‐history traits that differ between the edge and the centre of the population’s geographic range. To test this hypothesis, life‐history traits of an expanding population of round goby, Neogobius melanostomus (Pallas), in early and newly established sites in the Trent River (Ontario, Canada) were compared in 2007 and 2008. Round goby in the area of first introduction exhibited a significant decrease in age at maturity, increased length at age 1 and they increased in GSI from 2007 to 2008. While individuals at the edges of the range exhibited traits that promote population growth under low intraspecific density, yearly variability in life‐history traits suggests that additional processes such as declining density and fluctuating food availability are influencing the reproductive strategy and growth of round goby during an invasion.     

Advice in spite of great uncertainty: assessing and addressing bycatch of small fishes with limited data using Stellifer illecebrosus as a case study

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Physiological and behavioural responses to hypoxia in an invasive freshwater fish species and a native competitor

The spread of invasive species is one of the major environmental concerns which can have negative effects on biodiversity. While several life history traits have been identified as being important for increasing the invasiveness of introduced species, the physiological factors that allow certain species to become successful invaders remain poorly understood. It has been speculated that good invaders are thriving in disturbed environments. In unfavourable conditions, as during hypoxic events, invasive species might be better adapted in their physiological and behavioural responses towards this stressor. We compared physiological and behavioural traits between two freshwater fish species: the European bullhead (Cottus gobio), an invasive fish species in Scotland, and its native competitor the stone loach (Barbatula barbatula) over different dissolved oxygen concentrations (DO). Contrary to expectations, bullhead displayed a reduced hypoxia tolerance as compared to stone loach, indicated by a higher threshold (P_crit) for the maintenance of standard metabolism. Avoidance behaviour during progressive hypoxia was similar between bullhead and stone loach. When given a choice between an open normoxic zone and a shelter located in hypoxia, both species spent most of their time hiding under the shelter in hypoxic conditions (bullhead: 100%; stone loach: 93.93%–99.73%), although stone loach showed brief excursions into normoxic conditions under 25% DO level. These results suggest that stone loach might be more resistant to hypoxia as compared to bullhead, and thus that increased hypoxia tolerance is likely not a trait by which bullhead have been able to expand their range within the United Kingdom.     

Gorgonian population recovery after a mass mortality event

• 1. Mass mortality events are becoming more common all over the world, both in tropical and temperate seas. An extensive mortality occurred in the Mediterranean Sea in 1999, affecting many benthic species, mainly sponges and gorgonians.
• 2. The recovery of a population of the sea fan Paramuricea clavata, for a period of 3 yr, from 1999 to 2002, was studied by both line transects and fixed frames. The average size of the colonies decreased, indicating a size‐dependent mortality episode, but their density, as a result of successful recruitment, was not altered after 3 yr.
• 3. P. clavata showed three recovery patterns: (i) sexual reproduction, (ii) coenenchyme regeneration and (iii) fragmentation of affected branches. Moreover, the growth rates of small colonies varied in the different years. The sex ratio of the population was also altered, with females being more affected than males; the population studied showed a significant male bias (3.3:1, n=150), varying greatly from the typical sex ratio (1:1) previously recorded in the same population before the mass mortality event.

Copyright © 2004 John Wiley & Sons, Ltd.     

Validation of a qPCR assay for the detection of Ictalurid herpesvirus‐2 (IcHV‐2) in fish tissues and cell culture supernatants

Ictalurid herpesvirus‐2 (IcHV‐2) is a pathogen of cultured black bullhead, Ameiurus melas (Rafinesque), and has been shown to produce high mortality in experimental exposures of channel catfish, Ictalurus punctatus (Rafinesque). During acute infections, the virus grows readily in cell cultures but produces a cytopathic effect (CPE) similar to that of Ictalurid herpesvirus‐1 (IcHV‐1) and the channel catfish reovirus. We have developed a quantitative PCR assay that can be used to detect IcHV‐2 in fish tissues and cell culture supernatants. The assay does not amplify other fish herpesviruses tested or host DNA. It is quantitative over a range of eight logs, and the limit of detection is <10 copies per reaction. In replicate assays carried out on different days, the coefficient of variability was 10%. The best organs for the detection of acute IcHV‐2 infections by our assay are the spleen and kidney. This assay should be useful for the diagnosis of IcHV‐2 disease, the identification of syncytial CPEs in cell cultures, and for the detection of latent infections in carrier fish.     

Genetic variation and the relationship between stream and lake ecotypes of a threatened desert Catostomid,the Warner sucker (Catostomus warnerensis)

Many fish species exhibit diverse life history strategies that help maintain population viability. An understanding of the relationships among these strategies is crucial for prioritising conservation actions. The Warner sucker, endemic to the Warner Lakes Basin in southern Oregon, USA, is one example of a taxon where a lack of information regarding relationships among life history strategies has hampered conservation efforts. Warner suckers have two distinct life history types: stream‐type fish that have a fluvial life history and lake‐type fish that have an adfluvial life history. There are advantages and disadvantages associated with each life history, and presently the relationship between life history types is not well understood. Our objectives were to determine the amount of genetic variation within and among tributary populations of Warner suckers and to determine the origins of suckers collected in the Warner Lakes. We collected individuals from four tributary populations, a refugial population, and Hart and Crump lakes and genotyped them at 16 microsatellite loci. Estimates of genetic variation among populations suggested low levels of gene flow (F_ST = 0.153) and genetic variation among populations seemed to be influenced by population and habitat characteristics. Nearly all of the individuals collected in Hart and Crump lakes originated in a single tributary, Deep Creek, which likely reflects reduced habitat connectivity between most other tributaries and the Warner Lakes. Data presented in this study are useful for evaluating the status of Warner sucker populations and for prioritising conservation actions such as the removal and modification of barriers.     

Predation effects on matrotrophy,superfetation and other life history traits in Phalloceros harpagos

This study investigates the effect of a predation gradient on the female life history traits of the poeciliid live‐bearing fish Phalloceros harpagos from a tropical stream in Brazil. Females’ length at maturity, somatic dry mass, reproductive allotment and fecundity varied significantly among predation sites. Phalloceros harpagos from the high‐predation site showed smaller size at maturity and somatic dry mass, greater reproductive allotment and higher fecundity than the nonpredation site. In all sites, we observed superfetation: pregnant females with two broods at different developmental stages. The presence of superfetation was not observed before in other congeneric species, and it may represent an additional independent evolutionary origin of superfetation in the fish family Poeciliidae. Matrotrophy, the postfertilisation maternal provisioning of nutrients to developing embryos throughout gestation, was observed in all three sites, with values of the matrotrophy index above two. The population under high predation pressure showed the highest degree of matrotrophy (embryos quadruplicate their dry mass during development) and the greatest percentage of females with superfetation (44.4%). Some life history traits responded more strongly to predators’ presence and others to predator density. These results suggest that different predation regimes shape female life history traits, increasing fecundity in high‐predation sites. The results also suggest a link between the cost of reproduction and the evolution of matrotrophy and superfetation, potentially to reduce the risk of predation without reducing fecundity.     

Conservation status and reproduction of the critically endangered freshwater pearl mussel (Margaritifera margaritifera) in Northern Ireland

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Effects of early life mass mortality events on fish populations

Mass mortality events are ubiquitous in nature and can be caused by, for example, diseases, extreme weather and human perturbations such as contamination. Despite being prevalent and rising globally, how mass mortality in early life causes population-level effects such as reduced total population biomass, is not fully explored. In particular for fish, mass mortality affecting early life may be dampened by compensatory density-dependent processes. However, due to large variations in year-class strength, potentially caused by density-independent variability in survival, the impact at the population level may be high in certain years. We quantify population-level impacts at two levels of mass mortality (50% and 99% additional mortality) during early life across 40 fish species using age-structured population dynamics models. The findings from these species-specific models are further supported by an analysis of detailed stock-specific models for three of the species. We find that population impacts are highly variable between years and species. Short-lived species that exhibit a low degree of compensatory density dependence and high interannual variation in survival experience the strongest impacts at the population level. These quantitative and general relationships allow predicting the range of potential impacts of mass mortality events on species based on their life history. This is critical considering that the frequency and severity of mass mortality events are increasing worldwide.     

Life‐history differences of juvenile Chinook salmon Oncorhynchus tshawytscha across rearing locations in the Shasta River,California

Salmon from different locations in a watershed can have different life histories. It is often unclear to what extent this variation is a response to the current environmental conditions an individual experiences as opposed to local‐scale genetic adaptation or the environment experienced early in development. We used a mark–recapture transplant experiment in the Shasta River, CA, to test whether life‐history traits of juvenile Chinook salmon Oncorhynchus tshawytscha varied among locations, and whether individuals could adopt a new life history upon encountering new habitat type. The Shasta River, a Klamath River tributary, has two Chinook salmon spawning and juvenile rearing areas, a lower basin canyon (river km 0–12) and upper basin spring complex (river km 40–56), characterised by dramatically different in‐stream habitats. In 2012 and 2013, we created three experimental groups: (i) fish caught, tagged and released in the upper basin; (ii) fish caught at the river mouth (confluence with the Klamath River, river km 0), tagged and released in the upper basin; and (iii) fish caught at the river mouth, tagged and released in the lower basin. Fish released in the upper basin outmigrated later and at a larger size than those released in the lower basin. The traits of fish transplanted to the upper basin were similar to fish originating in the upper basin. Chinook salmon juvenile life‐history traits reflected habitat conditions fish experienced rather than those where they originated, indicating that habitat modification or transportation to new habitats can rapidly alter the life‐history composition of populations.     

Assessment of the fecundity,population growth and fatty acid composition of Apocyclops royi (Cyclopoida,Copepoda) fed on different microalgal diets

The brackish cyclopoid copepod Apocyclops royi is used in Taiwanese aquaculture industry as a prey for fish larvae. This study investigated the effects of seven microalgal diets, namely single‐species diets of Isochrysis galbana (ISO), Nannochloropsis oculata (NAN), and Tetraselmis chui (TET), two‐species diets (ISO+NAN, ISO+TET and TET+NAN), and a three‐species diet (ISO+NAN+TET), on the population growth, female fecundity and fatty acid composition of A. royi. For reproductive traits, the combination ISO+NAN was found to be the most supportive diet for both population growth and female fecundity. For nutritional value, copepods fed ISO and ISO+NAN were detected to have the highest content of docosahexaenoic acid (DHA) (18.99% and 10.73% total fatty acid, respectively) and, more importantly, a high DHA/EPA ratio (6.09 and 4.09, respectively). Additionally, a comparison of fatty acid composition between copepods and microalgae gives a tentative indication that A. royi may have the ability to synthesize long‐chain polyunsaturated fatty acids (PUFA) from short‐chain PUFA. Our findings illustrate that ISO+NAN is the most suitable microalgal diet for mass culturing A. royi because it increases productivity and enhances the nutritional value of the copepods for use as fish larvae prey.     

A caution for conservation stocking as an approach for recovering Atlantic eels

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Fate and legacy of an invasion: extinct and extant populations of the soft‐shell clam (Mya arenaria) in Grays Harbor (Washington)

1. The soft‐shell clam, Mya arenaria, was intentionally introduced to Washington State during the mid‐1870s. Presently, extensive shell deposits cover parts of the intertidal flats of Grays Harbor, an estuarine ecosystem that has received much attention because of its role as nursery ground for Dungeness crab (Cancer magister), a commercially significant species. 2. Preliminary observations revealed that shells in the deposits belonged to clams that were much larger than extant conspecifics. Shell deposits and extant populations have spatially disjoint distributions; few individuals are found living within the deposits. The purpose of our study was to determine the cause of the different size characteristics between extinct and extant clams, when and how the deposits originated, and why the extant population does not prosper in what appears to be prime habitat. 3. We (i) surveyed extant populations and shell deposits, (ii) followed the extant population through periodic sampling over a 3‐year period, (iii) investigated growth and survival in extant and extinct populations, (iv) experimentally manipulated growth conditions, and (v) searched archival sources for information about the origin of the deposits. 4. We conclude that extinct clams grew faster and lived longer, apparently because they occupied the best habitats available. Archival records suggest that the population expanded rapidly during the period around 20 years after its introduction, but was decimated between 1895 and 1897 by a mass‐mortality episode that resulted in the formation of the deposits. The population since then has never rebounded in its prime habitat, in spite of potential settlers being regularly available. 5. Dungeness crab larvae settle preferentially in the shell deposits, where the abundance of 0+ age juveniles is orders of magnitude higher than in the adjacent flats. We hypothesize that predation by juvenile crabs limits clam recruitment. 6. The introduction of Mya to Grays Harbor during the 1870s has had long‐lasting effects, which persist a century after their once large populations were decimated by a mass‐mortality event. Copyright © 2000 John Wiley & Sons, Ltd.     

Importance of life‐history and landscape characteristics for genetic structure and genetic diversity of brown trout (Salmo trutta L.)

Abstract – Investigating the influence of evolutionary forces on the genetic structure and genetic diversity remains a major challenge. Yet, it is of considerable interest for conservation and management of a species. This study investigates the influence of life‐history and landscape features, such as altitude, connectivity and habitat size, on genetic diversity and genetic structure of brown trout (Salmo trutta L.) with stream‐resident, lake‐dwelling and sea‐migrating life‐history in two river systems in northern Sweden. Using regression tree analysis including ecological and landscape characteristics, we show that life history is the most important variable explaining genetic diversity and population differentiation. Sea‐migrating populations show high diversity and low differentiation, and lake‐ and stream‐resident populations show low diversity and high population differentiation, among all samples. No overall genetic correlation with geographical distance was noted; however, among sea‐migrating populations within the River Vindelälven drainage, this pattern was observed. This study illustrates that life‐history and landscape features help to explain genetic structure and genetic variation. The information is important for conservation and management actions, such as fisheries regulations, habitat restorations, stocking of hatchery fish, defining management units and introducing genetic monitoring programmes.