Life‐history differences of juvenile Chinook salmon Oncorhynchus tshawytscha across rearing locations in the Shasta River,California

Salmon from different locations in a watershed can have different life histories. It is often unclear to what extent this variation is a response to the current environmental conditions an individual experiences as opposed to local‐scale genetic adaptation or the environment experienced early in development. We used a mark–recapture transplant experiment in the Shasta River, CA, to test whether life‐history traits of juvenile Chinook salmon Oncorhynchus tshawytscha varied among locations, and whether individuals could adopt a new life history upon encountering new habitat type. The Shasta River, a Klamath River tributary, has two Chinook salmon spawning and juvenile rearing areas, a lower basin canyon (river km 0–12) and upper basin spring complex (river km 40–56), characterised by dramatically different in‐stream habitats. In 2012 and 2013, we created three experimental groups: (i) fish caught, tagged and released in the upper basin; (ii) fish caught at the river mouth (confluence with the Klamath River, river km 0), tagged and released in the upper basin; and (iii) fish caught at the river mouth, tagged and released in the lower basin. Fish released in the upper basin outmigrated later and at a larger size than those released in the lower basin. The traits of fish transplanted to the upper basin were similar to fish originating in the upper basin. Chinook salmon juvenile life‐history traits reflected habitat conditions fish experienced rather than those where they originated, indicating that habitat modification or transportation to new habitats can rapidly alter the life‐history composition of populations.     

Ecology of larval blue sucker (Cycleptus elongatus) in the Mississippi River

Abstract –  Ecology of larval blue sucker, Cycleptus elongatus , a North American catostomid that has declined throughout its range, is poorly known because larvae have rarely been sampled. A total of 316 young blue suckers (16.0–39.0 mm total length) was captured over 3 years at 14 off-channel sites in Pool 25, Mississippi River. Blue suckers demonstrated distinct temporal and spatial abundance patterns. Blue suckers were only captured in late May/early June, and were more abundant during a year of little flooding. Abundance was correlated with the distance a site was from the main channel, being highest in island borders and island sloughs in proximity to the channel. Fish guts contained a relatively high biomass of chironomids and zooplankton, suggesting islands were providing suitable feeding opportunities. Because of their proximity to flows, slack waters provided by islands were accessible to blue sucker larvae dispersing from channel spawning areas and facilitated their development into rheophilic juveniles.     

Movement ecology of imperilled fish in a novel ecosystem: River‐reservoir movements by razorback sucker and translocations to aid conservation

1. Reservoirs and associated river fragments are novel ecosystems not experienced by fishes in their evolutionary history, yet they are now commonplace across the globe. Understanding how fishes use these novel habitats is vital to conservation efforts in contemporary riverscapes.
2. Movement patterns of the endangered razorback sucker (Xyrauchen texanus) synthesized from tagging efforts in the upper Colorado River basin, USA, illustrate the applications of tagging technology and data sharing by multiple agencies to better understand the spatial ecology of large river fishes.
3. Tagging studies between 2014 and 2018 in Lake Powell and its two main tributary rivers, the Colorado (unfragmented) and San Juan (waterfall‐fragmented), were used to quantify movement of razorback sucker within this river–reservoir habitat complex. In addition, facilitated translocations of fish upstream of a waterfall barrier in the San Juan River were assessed in 2016–2017.
4. Extensive movement of fish occurred within and across river and reservoir habitats. Of 722 fish captured in the Colorado River arm of Lake Powell, 36% of re‐encounters occurred upstream in the Colorado or Green rivers, or fish dispersed through the reservoir and were detected in the San Juan River arm. Fourteen fish moved more than 600 km. In the San Juan arm of the reservoir, 29% and 20% of fish in 2017 and 2018, respectively, had moved ~30–40 km upstream below the waterfall in the San Juan River within a year. In 2016–2017, 303 fish were translocated upstream of the waterfall into the San Juan River, but 80% were re‐encountered downstream of the waterfall within a year.
5. Long‐distance movements by razorback sucker were common within and among rivers and reservoirs illustrating how large river fish, in general, might maintain population connectivity in highly altered ecosystems.

     

Distribution and growth of blue sucker in a Great Plains river, USA

Abstract  Blue sucker, Cycleptus elongatus (Le Sueur), was sampled in the Kansas River, Kansas, USA to determine how relative abundance varies spatially and growth compares to other populations. Electric fishing was conducted at 36 fixed sites during five time periods from March 2005 to January 2006 to determine seasonal distribution. An additional 302 sites were sampled in summer 2005 to determine distribution throughout the river. A total of 101 blue sucker was collected ranging from 242 to 782 mm total length and 1–16 years old. Higher catch rates were observed in upper river segments and below a low-head dam in lower river segments, and catch rates were higher during November in the upriver sites. Kansas River blue sucker exhibited slower growth rates than other populations in the Great Plains including populations as far north as South Dakota.     

River flooding and reproduction of migratory fish species in the Magdalena River basin,Colombia

Jiménez‐Segura LF, Palacio J, Leite R. River flooding and reproduction of migratory fish species in the Magdalena River basin, Colombia.
Ecology of Freshwater Fish 2010: 19: 178–186. © 2010 John Wiley & Sons A/S Abstract – In most tropical rivers subject to a single‐yearly flooding, migratory fish usually spawn in the onset of the flooding and larvae drift to their nursery habitats. To define when the migratory fish species reproduce, its relationship with the water level and when nursery areas in floodplain lakes are supplied with ichthyoplankton in the Magdalena River, a two‐yearly peak flooding river, we sampled the ichthyoplankton weekly throughout 2 years. The fish species Pseudoplatystoma magdaleniatum, Prochilodus magdalenae, Leporinus muyscorum, Sorubim cuspicaudus and Curimata mivartii spawn twice a year in the main channel and its larvae input into the floodplain lakes are not always associated with flooding. Spawning in the main channel and larvae inputs into the floodplain lakes suggest that the habitat used by the migratory fishes may be consistent with some hypotheses on habitats used by these fishes.     

Large‐bodied fish migration and residency in a flood basin of the Sacramento River,California, USA

River–floodplain complexes represent some of the most variable and diverse habitats on earth, yet they are among our planet's most threatened ecosystems. Use of these habitats by large‐bodied fishes is especially poorly understood, particularly in temperate regions. To provide insight into the factors that affect floodplain assemblages and migration, we sampled large‐bodied fishes with a fyke trap for 7 years in the Yolo Bypass, the primary flood basin of the Sacramento River, California. We collected a total of 18,336 individual fish comprised of 27 species, only 41% of which were native. Year‐round resident species white catfish Ameiurus catus, channel catfish Ictalurus punctatus and common carp Cyprinus carpio (all alien species) were the most abundant and comprised 74% of the total catch. Splittail Pogonichthys macrolepidotus (3.8%), white sturgeon Acipenser transmontanus (2.3%) and Sacramento sucker Catostomus occidentalis (1.1%) were the primary native species. We found that seasonal variation in water temperature and flood stage were important factors affecting the fish assemblage structure and the presence of migratory species. American shad Alosa sapidissima, an alien species, showed highest abundance during the early summer upstream migration, when temperatures were warmer. For native species, the abundances of white sturgeon, splittail, Sacramento pikeminnow Ptychocheilus grandis and Sacramento sucker were all highest during flood pulses. While our results suggest that flow alone is not sufficient to control alien species, the strong linkage between native fish migration and flow pulses highlights the importance of river–floodplain connectivity for the conservation of native fishes.     

Patterns of fish movement at a desert river confluence

Quantifying fish movements in river networks helps identify critical habitat needs and how they change with environmental conditions. Some of the challenges in tracking fish movements can be overcome with the use of passive integrated transponder (PIT) tagging and antennas. We used PIT technology to test predictions of movement behaviour for four fish species at a mainstem–tributary confluence zone in an arid‐land river system. Specifically, we focused on the McElmo Creek tributary confluence with the San Juan River in south‐western Utah, USA. We quantified variation in species occurrences at this confluence zone from May 2012 to December 2015 relative to temporal and environmental conditions. We considered occurrences among species relative to tagging origins (tributary versus mainstem), season and time of day. Generally, fishes tagged in the focal tributary were more likely to be detected compared to fish tagged in the mainstem river or other tributaries. Additionally, adults were most likely to be detected across multiple years compared to subadults. Based on a Random Forests model, the best performing environmental variables for predicting seasonal detections included mainstem discharge during run‐off season (razorback sucker Xyrauchen texanus), tributary discharge during monsoon season (Colorado pikeminnow Ptychocheilus lucius) and mainstem water temperature (flannelmouth sucker Catostomus latipinnis and channel catfish Ictalurus punctatus). The variable responses by endemic and introduced fishes indicate tributary habitats provide several key functions within a fish community including spawning, rearing, foraging and refuge.     

Precision of age estimates derived from scales and pectoral fin rays of blue sucker

Abstract Evaluating the response of fish populations to environmental influences requires precise age estimation. Pectoral fin rays and scales were compared to determine which is more precise for estimating age of blue sucker, Cycleptus elongatus (Lesueur), from the Missouri River, USA. Mean coefficient of variation was significantly lower for fin rays both among three novice readers (rays 19.9%; scales 23.1%) and among three reads by a single experienced reader (rays 11.8%; scales 18.6%). Additionally, exact per cent agreement (rays 20.0%; scales 14.3%) and within‐1‐year per cent agreement (rays 89.1%; scales 73.9%) were higher for fin rays compared with scales for multiple reads by the same experienced reader. Age–bias plots revealed that scale ages were lower than fin‐ray ages >7. The use of fin rays is recommended for estimating ages of blue sucker until validation procedures are conducted.     

Economic Impact of Double‐Crested Cormorant,Phalacrocorax auritus,Depredation on Channel Catfish,Ictalurus punctatus,Aquaculture in Mississippi,USA

The Yazoo River Basin of Mississippi, USA, supports the largest concentration of hectares devoted to channel catfish, Ictalurus punctatus, aquaculture production in North America. The Yazoo Basin also supports large numbers of resident, wintering and migrating fish‐eating birds, with the Double‐crested Cormorant, Phalacrocorax auritus, implicated as the most serious depredating species. We used data from aerial surveys of numbers and distribution of cormorants in the Yazoo Basin and on commercial catfish ponds during winters (November–April) 2000–2001 and 2003–2004 to refine estimates of regional economic losses due to cormorant depredation. In both periods, the greatest monthly estimates of cormorant foraging occurred from 1 January to 31 March. Losses in terms of biomass, number, and dollar value were greater for foodfish ponds than fingerling ponds. Monthly weighted estimates of catfish consumed were 1775.3 and 1346.6 m.t. over winters 2000–2001 and 2003–2004, respectively. Total estimated losses for foodfish and fingerling ponds in 2000–2001 were $11.56 and $0.48 million, respectively, and in 2003–2004 were $5.22 and $0.40 million, respectively. Maximum dollar loss occurred during March in 2000–2001 and during February in 2003–2004. In this study, the volatility in variable production costs and nominal sales price, and distribution of cormorants on pond types and regionally were key factors in resulting economic loss estimates.     

Habitat use and population structure of four native minnows (family Cyprinidae) in the upper Missouri and lower Yellowstone rivers, North Dakota (USA)

Abstract – In 1997 and 1998, sampling was conducted on the Missouri and Yellowstone rivers, North Dakota, to obtain information on the distribution, abundance, and habitat use of the flathead chub (Platygobio gracilis Richardson), sicklefin chub (Macrhybopsis meeki Jordan & Evermann), sturgeon chub (Macrhybopsis gelida Girard), and western silvery minnow (Hybognathus argyritis Girard), four declining fish species (family Cyprinidae) native to the Missouri River basin, USA. The study area consisted of four distinct river segments near the confluence of the Missouri and Yellowstone rivers – three moderately altered segments that were influenced by a main‐stem dam and one quasi‐natural segment. One moderately altered segment was located at the confluence of the two rivers (mixing‐zone segment (MZS)). The other two moderately altered segments were in the Missouri River adjacent to the MZS and extended up‐river (above‐confluence segment (ACS)) and down‐river (below‐confluence segment (BCS)) from this segment. The quasi‐natural segment (Yellowstone River segment (YRS)) extended up‐river from the MZS in the Yellowstone River. Catch rates with the trawl for sicklefin chub and sturgeon chub and catch rates with the bag seine for flathead chub and western silvery minnow were highest in the BCS and YRS. Most sicklefin and sturgeon chubs were captured in the deep, high‐velocity main channel habitat with the trawl (sicklefin chub, 97%; sturgeon chub, 85%), whereas most flathead chub and western silvery minnow were captured in the shallow, low‐velocity channel border habitat with the bag seine (flathead chub, 99%; western silvery minnow, 98%). Best‐fit regression models correctly predicted the presence or absence of sicklefin chub, flathead chub, and western silvery minnow more than 80% of the time. Sturgeon chub presence and absence were predicted correctly 55% of the time. Best‐fit regression models fit to fish number data for flathead chub, sicklefin chub, and sturgeon chub and fish catch‐per‐unit‐effort (CPUE) data for flathead chub also provided good fits, with R² values ranging from 0.32 to 0.55 (P < 0.0001). The higher density and catch of the four native minnows in the YRS and BCS suggest that these two segments are better habitat than the ACS and MZS.     

A qualitative ecological risk assessment of the invasive Nile tilapia,Oreochromis niloticus in a sub‐tropical African river system (Limpopo River,South Africa)

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The tolerance threshold of Chinese sucker to total dissolved gas supersaturation

Total dissolved gas (TDG) supersaturation generated in the river may result in gas bubble disease to Chinese sucker (Myxocyprinus asiaticus Bleeker) and cause their mortality. To assess the effects of TDG supersaturation on Chinese suckers in laboratory, juvenile fish were exposed to different levels of TDG supersaturated water. All of the fish died when the TDG saturation reached and exceeded 125%, but none died at TDG of 120% saturation in 96 h. To evaluate the effects of intermittent exposure of TDG supersaturation, Chinese suckers were exposed to TDG of 130% for a specific duration and then provided a recovery period at 100% saturation. The results showed that some remission is possible for intermittent exposure. Because of the characteristics of natural rivers, experiments exploring the TDG supersaturation detection and avoidance abilities of Chinese suckers were conducted and demonstrated the fish can avoid TDG supersaturation in both the horizontal and vertical directions when higher TDG levels were available. The results indicate the tolerance threshold of juvenile Chinese suckers is a TDG level of 120% saturation.     

Diet and trophic niche overlap of native and nonnative fishes in the Gila River,USA: implications for native fish conservation

Pilger TJ, Gido KB, Propst DL. Diet and trophic niche overlap of native and nonnative fishes in the Gila River, USA: implications for native fish conservation. Ecology of Freshwater Fish 2010: 19: 300–321. © 2010 John Wiley & Sons A/S Abstract –  The upper Gila River basin is one of the few unimpounded drainage basins west of the Continental Divide, and as such is a stronghold for endemic fishes in the region. Nevertheless, multiple nonindigenous fishes potentially threaten the persistence of native fishes, and little is known of the trophic ecology of either native or nonnative fishes in this system. Gut contents and stable isotopes (¹³C and ¹⁵N) were used to identify trophic relationships, trophic niche overlap and evaluate potential interactions among native and nonnative fishes. Both native and nonnative fishes fed across multiple trophic levels. In general, adult native suckers had lower ¹⁵N signatures and consumed more algae and detritus than smaller native fish, including juvenile suckers. Adult nonnative smallmouth bass (Micropterus dolomieu), yellow bullhead (Ameiurus natalis) and two species of trout preyed on small‐bodied fishes and predaceous aquatic invertebrates leading to significantly higher trophic positions than small and large‐bodied native fishes. Thus, the presence of these nonnative fishes extended community food‐chain lengths by foraging at higher trophic levels. Although predation on juvenile native fishes might threaten persistence of native fishes, the high degree of omnivory suggests that impacts of nonnative predators may be lessened and dependent on environmental variability.     

湟水流域水生态保护与修复研究

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Potential population and assemblage influences of non‐native trout on native nongame fish in Nebraska headwater streams

Non‐native trout are currently stocked to support recreational fisheries in headwater streams throughout Nebraska. The influence of non‐native trout introductions on native fish populations and their role in structuring fish assemblages in these systems is unknown. The objectives of this study were to determine (i) if the size structure or relative abundance of native fish differs in the presence and absence of non‐native trout, (ii) if native fish‐assemblage structure differs in the presence and absence of non‐native trout and (iii) if native fish‐assemblage structure differs across a gradient in abundances of non‐native trout. Longnose dace Rhinichthys cataractae were larger in the presence of brown trout Salmo trutta and smaller in the presence of rainbow trout Oncorhynchus mykiss compared to sites without trout. There was also a greater proportion of larger white suckers Catostomus commersonii in the presence of brown trout. Creek chub Semotilus atromaculatus and fathead minnow Pimephales promelas size structures were similar in the presence and absence of trout. Relative abundances of longnose dace, white sucker, creek chub and fathead minnow were similar in the presence and absence of trout, but there was greater distinction in native fish‐assemblage structure between sites with trout compared to sites without trout as trout abundances increased. These results suggest increased risk to native fish assemblages in sites with high abundances of trout. However, more research is needed to determine the role of non‐native trout in structuring native fish assemblages in streams, and the mechanisms through which introduced trout may influence native fish populations.     

Genetic variation and the relationship between stream and lake ecotypes of a threatened desert Catostomid,the Warner sucker (Catostomus warnerensis)

Many fish species exhibit diverse life history strategies that help maintain population viability. An understanding of the relationships among these strategies is crucial for prioritising conservation actions. The Warner sucker, endemic to the Warner Lakes Basin in southern Oregon, USA, is one example of a taxon where a lack of information regarding relationships among life history strategies has hampered conservation efforts. Warner suckers have two distinct life history types: stream‐type fish that have a fluvial life history and lake‐type fish that have an adfluvial life history. There are advantages and disadvantages associated with each life history, and presently the relationship between life history types is not well understood. Our objectives were to determine the amount of genetic variation within and among tributary populations of Warner suckers and to determine the origins of suckers collected in the Warner Lakes. We collected individuals from four tributary populations, a refugial population, and Hart and Crump lakes and genotyped them at 16 microsatellite loci. Estimates of genetic variation among populations suggested low levels of gene flow (F_ST = 0.153) and genetic variation among populations seemed to be influenced by population and habitat characteristics. Nearly all of the individuals collected in Hart and Crump lakes originated in a single tributary, Deep Creek, which likely reflects reduced habitat connectivity between most other tributaries and the Warner Lakes. Data presented in this study are useful for evaluating the status of Warner sucker populations and for prioritising conservation actions such as the removal and modification of barriers.     

Role of large‐ and fine‐scale variables in predicting catch rates of larval Pacific lamprey in the Willamette Basin,Oregon

Pacific lamprey Entosphenus tridentatus is an anadromous fish native to the Pacific Northwest of the USA. That has declined substantially over the last 40 years. Effective conservation of this species will require an understanding of the habitat requirements for each life history stage. Because its life cycle contains extended freshwater rearing (3–8 years), the larval stage may be a critical factor limiting abundance of Pacific lamprey. The objective of our study was to estimate the influence of barriers and habitat characteristics on the catch‐per‐unit‐effort (CPUE) of larval Pacific lamprey in the Willamette River Basin, Oregon, USA. We sampled lampreys at multiple locations in wadeable streams throughout the basin in 2011–13 and used an information theoretic approach to examine the relative influence of fine‐ and large‐scale predictors of CPUE. Pacific lamprey was observed across the basin, but its relative abundance appeared to be limited by the presence of natural and artificial barriers in some sub‐basins. Lower velocity habitats such as off‐channel areas and pools contained higher densities of larval lamprey; mean Pacific lamprey CPUE in off‐channel habitats was 4 and 32 times greater than in pools and riffles respectively. Restoration and conservation strategies that improve fish passage, enhance natural hydrologic and depositional processes and increase habitat heterogeneity will likely benefit larval Pacific lamprey.     

Channel change and vegetation diversity on a low‐angle alluvial fan,River Feshie,Scotland

1. The River Feshie, a wandering gravel‐bed river, has a prominent alluvial fan at its confluence with the River Spey forming a site of high conservation importance. The River Feshie is the best example of a relatively natural highly active gravel‐bed river in the UK and the fan also contains one of the few remnants of Scotland's original floodplain forest cover. 2. Channel switching and changes in gravel‐bar morphology are a characteristic feature of this river. In recent years the river occupied a central position within the alluvial fan, until a major shift in the position of the channel to the southern sector of the fan occurred in 1990. However, riparian owners restored the flow to the original channel. In 1996, following this study, the channel again shifted course. This time no restoration of flow to the original course of the channel occurred and the river now follows a more northerly course. The old course is thus currently devoid of flow and pioneer species are starting to colonize the gravels. 3. The natural vegetation on the alluvial fan and islands along the River Spey are a mosaic of grassland, partially vegetated gravel bars and woodland, the mosaic reflecting both channel and fan morphology and dynamics. Highest species diversity was on the riverine islands, followed by the woodland and grassland respectively. In total 129 plant species were recorded and identified within the area. 4. In recent years there have been proposals to alter the location of the River Feshie and confine it to a more stable channel. In association with these channel works, dredging of the River Spey at the Feshie confluence would also be undertaken. These proposals prompted the research presented within this paper, and the results illustrate that the implementation of river training would lead to a loss of the site's unique character and vegetation diversity. Copyright © 2000 John Wiley & Sons, Ltd.     

Spatial organisation of fish assemblages in the Chishui River,the last free‐flowing tributary of the upper Yangtze River,China

The Chishui River is the last free‐flowing tributary of the upper Yangtze River, China, which has an important role in fish conservation. This study aimed to explore the spatial organisation of fish assemblages in this river. Field sampling was conducted biannually between 2015 and 2017 at 41 sites from its headwater and downstream. One hundred and twenty‐two fish species were captured, including 34 endemic, 15 threatened and six exotic species. Fish assemblages varied significantly along the longitudinal gradient. Based on cluster and ordination analyses, 41 sampling sites could be divided into five site‐groups, corresponding to the headwater, upstream, midstream, downstream and the Xishui‐branch, respectively. The splitting of fish assemblages was consistent with the geographical divisions. However, fish species changed gradually along the longitudinal gradient rather than abruptly, which was consistent with the River Continuum Concept (RCC). In the headwaters and upstream, fish assemblages were mainly dominated by cold‐water and rheophilic species, while in the lower stretches, fish assemblages were dominated by warm‐water and limnophilic species. According to null models, fish assemblages were significantly nonrandomly structured at the basin scale, but randomly structured at the regional scale. This study is an important step in understanding the assembly rules of fish assemblages in this free‐flowing river and provides useful information for future fish conservation and ecological restoration.     

Tumours in white suckers from Lake Michigan tributaries: pathology and prevalence

The prevalence and histopathology of neoplastic lesions were assessed in white sucker Catostomus commersonii captured at two Lake Michigan Areas of Concern (AOCs), the Sheboygan River and Milwaukee Estuary. Findings were compared to those observed at two non‐AOC sites, the Root and Kewaunee rivers. At each site, approximately 200 adult suckers were collected during their spawning migration. Raised skin lesions were observed at all sites and included discrete white spots, mucoid plaques on the body surface and fins and large papillomatous lesions on lips and body. Microscopically, hyperplasia, papilloma and squamous cell carcinoma were documented. Liver neoplasms were also observed at all sites and included both hepatocellular and biliary tumours. Based on land use, the Kewaunee River was the site least impacted by human activities previously associated with fish tumours and had significantly fewer liver neoplasms when compared to the other sites. The proportion of white suckers with liver tumours followed the same patterns as the proportion of urban land use in the watershed: the Milwaukee Estuary had the highest prevalence, followed by the Root, Sheboygan and Kewaunee rivers. The overall skin neoplasm (papilloma and carcinoma) prevalence did not follow the same pattern, although the percentage of white suckers with squamous cell carcinoma exhibited a similar relationship to land use. Testicular tumours (seminoma) were observed at both AOC sites but not at the non‐AOC sites. Both skin and liver tumours were significantly and positively associated with age but not sex.