Animal manure and anhydrous ammonia amendment alter microbial carbon use efficiency,microbial biomass,and activities of dehydrogenase and amidohydrolases in semiarid agroecosystems

The potential negative impact of agricultural practices on soil and water quality is of environmental concern. The associated nutrient transformations and movements that lead to environmental concerns are inseparable from microbial and biochemical activities. Therefore, biochemical and microbiological parameters directing nitrogen (N) transformations in soils amended with different animal manures or inorganic N fertilizers were investigated. Soils under continuous corn cultivation were treated with N annually for 5 years at 56, 168, and 504 kg N ha⁻¹ in the form of swine effluent, beef manure, or anhydrous ammonia. Animal manure treatments increased dehydrogenase activity, microbial biomass carbon (C_mic) and N (N_mic) contents, and activities of amidohydrolases, including l-asparaginase, urease, l-glutaminase, amidase, and β-glucosaminidase. Soils receiving anhydrous ammonia demonstrated increased nitrate contents, but reduced microbiological and biochemical activities. All treatments decreased C_mic:organic C (C_org) ratios compared with the control, indicating reduced microbial C use efficiency and disturbance of C equilibrium in these soil environments. Activities of all enzymes tested were significantly correlated with soil C_org contents (P < 0.001, n = 108), but little correlation (r = 0.03, n = 36) was detected between C_mic and C_org. Activities of amidase and β-glucosaminidase were dominated by accumulated enzymes that were free of microbial cells, while activities of asparaginase and glutaminase were originated predominately from intracellular enzymes. Results indicated that soil microbial and biochemical activities are sensitive indicators of processes involved in N flow and C use efficiency in semiarid agroecosystems.     

Microbial respiration activities of soils from different climatic regions of European Russia

The aim of this study was to survey and evaluate the microbial respiration of main soil types (gleyic Cryosols, umbric Albeluvisols, albic Luvisols, luvic Chernozems, Kastanozems) across European Russia, from semiarid to polar climatic zones. Soil was sampled from 0–5 and 5–10 cm layers at natural (forest, grassland, fallow) and corresponding sites under agricultural land use. Soil microbial biomass carbon (C_mic) determined by the substrate-induced respiration method and basal respiration (BR) were measured under standardized laboratory conditions (22 °C, 60% WHC). The ratios of BR/C_mic and C_mic/C_org were also calculated. C_mic and BR were highest in polar (gleyic Cryosols) and temperate (albic Luvisols, luvic Chernozems) climatic zones, the lowest were in boreal (umbric Luvisols) and semiarid (Kastanozems). C_mic, BR and C_mic/C_org ratios were higher in 0–5 cm layers compared to the corresponding 5–10 cm and in natural sites versus in arable. Principal component analysis yielded a clear separation of the vegetation zones with respect to the several principal components (PC). PC 1 was composed of C_mic, BR, soil chemical (C_org, N_tot) and texture parameters. PC 2 was composed of climatic (MAT, MAP) and soil pH variables. Three-way ANOVA indicated that “soil type”, “ecosystem” and “layer” factors, and their interactions accounted for almost 98 and 99% of the total variance in C_mic and BR, respectively.     

Carbon dynamics determined by natural C abundance in microcosm experiments with soils from long-term maize and rye monocultures

Understanding carbon dynamics in soil is the key to managing soil organic matter. Our objective was to quantify the carbon dynamics in microcosm experiments with soils from long-term rye and maize monocultures using natural ¹³C abundance. Microcosms with undisturbed soil columns from the surface soil (0-25 cm) and subsoil (25-50 cm) of plots cultivated with rye (C₃-plant) since 1878 and maize (C₄-plant) since 1961 with and without NPK fertilization from the long-term experiment ‘Ewiger Roggen’ in Halle, Germany, were incubated for 230 days at 8 °C and irrigated with 2 mm 10⁻² M CaCl₂ per day. Younger, C₄-derived and older, C₃-derived percentages of soil organic carbon (SOC), dissolved organic carbon (DOC), microbial biomass (C_mic) and CO₂ from heterothropic respiration were determined by natural ¹³C abundance. The percentage of maize-derived carbon was highest in CO₂ (42-79%), followed by C_mic (23-46%), DOC (5-30%) and SOC (5-14%) in the surface soils and subsoils of the maize plots. The percentage of maize-derived C was higher for the NPK plot than for the unfertilized plot and higher for the surface soils than for the subsoils. Specific production rates of DOC, CO₂-C and C_mic from the maize-derived SOC were 0.06-0.08% for DOC, 1.6-2.6% for CO₂-C and 1.9-2.7% for C_mic, respectively, and specific production rates from rye-derived SOC of the continuous maize plot were 0.03-0.05% for DOC, 0.1-0.2% for CO₂-C and 0.3-0.5% for C_mic. NPK fertilization did not affect the specific production rates. Strong correlations were found between C₄-derived C_mic and C₄-derived SOC, DOC and CO₂-C (r≥0.90), whereas the relationship between C₃-derived C_mic and C₃-derived SOC, DOC and CO₂-C was not as pronounced (r≤0.67). The results stress the different importance of former (older than 40 years) and recent (younger than 40 years) litter C inputs for the formation of different C pools in the soil.     

Carbon and nitrogen enhancement in Cambisols and Vertisols by Acacia spp. in eastern Burkina Faso: Relation to soil respiration and microbial biomass

The current study tested the contribution of native Acacia species of the Sudano-Sahelian zone to improving organic carbon and nitrogen level in Cambisols and Vertisols with specific focus on variation in microbial biomass (C_mic), soil basal respiration (C_resp) and metabolic quotient (qCO₂). The results show enrichment in total organic carbon (C_total), in total nitrogen (N_total) and higher clay content under Acacia canopies as compared to adjacent open grasslands. The relative nutrient concentration in Acacia cover showed an increase in C_mic ranging from 203 to 572 μg g⁻¹ whereas in adjacent open grassland it varied from 100 to 254 CO₂–C μg g⁻¹. As a function of C_mic (r = 0.60), C_total (r = 0.70) and N_total (r = 0.70), C_resp was higher under Acacia canopies than open grassland and this difference was more pronounced when measured over lengthier incubation periods (10–21 days). A lower qCO₂ under Acacia cover (except for one site) demonstrated a change in microorganisms communities structure and higher substrate use efficiency as compared to open grassland. The results also show that soil texture, as well as vegetation cover, influenced microbial processes. The negative correlation between clay content and carbon mineralization (C_resp/C_total, qCO₂), and positive linear relation between clay and C_mic supported the hypothesis that finer soil texture protects soil microbial biomass against degradation and limits organic matter mineralization. The specific effects of soil typology and vegetation cover on C_mic and qCO₂ variability were significant, but the greater effects were attributed to vegetation cover.     

Effects of chemical conditions in re-wetted peats on temporal variation in microbial biomass and acid phosphatase activity within the growing season

Possible effects of chemical alterations in peat following re-wetting on their microbial characteristics are insufficiently known. Microbial biomass carbon (C_mic), nitrogen (N_mic), phosphorus (P_mic) and acid phosphatase activity were investigated in re-wetted virtually undisturbed and differently degraded peatlands (Histosols) in northeast Germany to assess re-wetting effects on microbial biomass production and phosphorus (P) cycling in one growing season. The virtually undisturbed Eutri-Ombric Histosol had the largest content of microbial biomass (C_mic: 2132 mg/kg, N_mic: 309 mg/kg and P_mic: 48 mg/kg; means of six sampling dates, upper 10 cm). Increasingly lower contents of microbial biomass were observed in the more strongly degraded peats of two Ombri-Sapric Histosols. Furthermore, the proportions of P_mic as a percent of total P (P_t) were smallest in the strongly degraded Ombric-Sapric Histosol (1.6% of P_t) and gradually larger with better peat conservation (2.6% of P_t in the moderately degraded Ombri-Sapric Histosol and 3.0% of P_t in the virtually undisturbed Eutri-Ombric Histosol). The acid phosphatase activity was always greatest in May, irrespective of peat degradation. This maximum was lower for the Eutri-Ombric Histosol (2633 μg nitrophenol/(g h)) than for the two Ombri-Sapric Histosols (3963 and 3212 μg nitrophenol/(g h)). In the two degraded peats, the temporal variation in phosphatase activity was also more pronounced. Our results, in particular the higher peak phosphatase activity combined with an incorporation of P into microbial biomass, indicate that peat degradation may enhance the phosphate input to soil solution. Thus, it is concluded that modified biological P cycling could contribute to increased risks of P losses to adjacent surface water after re-wetting of degraded peats.     

Eucalyptus grandis and Acacia mangium in monoculture and intercropped plantations: Evolution of soil and litter microbial and chemical attributes during early stages of plant development

Soil microorganisms and microbial processes are influenced by the quality and quantity of plant waste entering the soil, by its seasonal and spatial distribution, by the ratio of above- to below-ground inputs, and by changes in nutrient inputs. Soil management strategies sometimes promote mixed-species plantations to mitigate the loss of soil nutrients and improve biogeochemical cycling. The objective of this study was to explore changes in microbiological and chemical attributes of soils and litter in the early stages of the second rotation of mixed and pure plantations of Eucalyptus grandis and Acacia mangium, and to look for correlations between attributes. Soil samples at 0–10 cm depth were collected two, seven, 14, and 20 months after planting in the following treatments: monocultures of A. mangium and E. grandis, a monoculture of E. grandis with N-fertilizer, and an intercropped plantation with E. grandis and A. mangium. Microbial soil attributes varied dramatically between treatments 20 months after planting. Total C, N and P contents in litter showed the strongest correlations with microbial biomass C and N (C_mic and N_mic), microbial respiration, and dehydrogenase activity in all sampling periods. Lower C/N and C/P ratios in litter and lower C/N and C_mic/tC ratios in soils after 20 months in the intercropped plantation illustrated the system's capacity for supplying inputs of high-quality organic matter rich in N and P, but this did not result in higher contents of these elements or greater microbial activity in soils. An implication of this finding is that, at least in the initial growth phase of these plantations, chemical attributes of the litter and variation in those attributes govern microbial processes and, consequently, are mostly responsible for plant development. Canonical discriminant analysis revealed changes in the microbiological and chemical attributes of soil in the intercropped plantation due to the plants growth and the leaf litter accumulation. Twenty months after planting, the different plantations could be discriminated by differences in litter chemistry (C, N, and P), total soil C, N_mic, and dehydrogenase activity, which were very similar in intercropped plantations and E. grandis with N-fertilizer. These results from the early stages of plantation development are important for understanding the dynamics of soil attributes in these systems, and especially in intercropped plantations. In intercropped areas the cumulative effect of microbial attributes reflects a more sustainable system. Long-term studies are needed to identify patterns that develop after 20 months, during the growth period of these plantations.     

Micro-scale modelling of carbon turnover driven by microbial succession at a biogeochemical interface

The detritusphere is a very thin but microbiological highly active zone in soil. To trace the fate of litter carbon in the detritusphere we developed a new 1D dynamic mechanistic model. In a microcosm experiment soil cores were incubated with ¹³C labelled rye residues (δ¹³C=299‰), which were placed on the surface. Microcosms were sampled after 3, 7, 14, 28, 56 and 84 days and soil cores were separated into layers of increasing distance to the litter. Gradients in soil organic carbon (TOC), dissolved organic carbon (DOC), microbial biomass and activity were detected over a distance of 3 mm from the litter layer. The newly developed 1D model simulates both the total carbon and the ¹³C carbon pools and fluxes, so that it was possible to include the ¹³C data in model optimisation. The special feature of the model is that it operates with two decomposer populations; the first one is assumed to be dominated by bacteria (initial-stage decomposer) and second one by fungi (late-stage decomposer). Moreover, in the model the DOC pool is divided into two sub pools. Each DOC pool is consumed by one of the decomposer populations. After parameter optimisation the model was well suited to simulate the experimental data. The model explained 92% of the observed variance. The model output provides a comprehensive insight into the carbon cycling within the detritusphere. The simulation results showed among others that after 84 days about 10% of total litter C was transferred to the soil organic matter (SOM) pool. Only 3% was located in the microbial biomass. From the evolved CO₂ 71% was litter-derived and 29% was soil-derived. From the litter-derived CO₂, 69% was directly formed in the litter layer. The remaining 31% was transported to soil before mineralisation. Our study shows that a combination of experimental work and mathematical modelling is a powerful approach to provide a comprehensive insight into the small-scale carbon turnover in soil.     

Responses of soil microbial biomass and activity for practices of organic and conventional farming systems in Piauí state,Brazil

The aim of this work was to investigate the response of soil microbial biomass and activity to practices in organic and conventional farming systems. The study was carried out at the Irrigation District of Piauí, Brazil. Five different plots planted with “acerola” orchard (Malpighia glaba) and established at the following management were evaluated: (1) under 12 months of soil conventional management (CNV); (2) under six months of soil organic management (ORG6); (3) under 12 months of soil organic management (ORG12); (4) under 18 months of soil organic management (ORG18); and (5) under 24 months of soil organic management (ORG24). Soil microbial biomass C (C_mic), basal respiration, organic carbon (C_org), C_mic-to-C_org ratio and metabolic quotient (qCO₂) were evaluated in soil samples collected at 0–10 cm depth. The highest C_org and C_mic levels occurred in organic system plots ORG18 and ORG24 compared to the conventional system. Soil respiration and C_mic-to-C_org ratio were significantly enhanced by the organic system plots. The qCO₂ was greater in conventional than in organic system. These results indicate that the organic practices rapidly improved soil microbial characteristics and slowly increase soil organic C.     

Soil microbiological and biochemical properties affected by plant growth and different long-term fertilisation

The purpose of this study was to measure the effects of plant growth on soil microbial biomass C (C_mic) and soil enzyme activities. In a pot experiment using spring barley and sugar beet, we investigated the response of C_mic, hot water extractable C and N fractions (C_hwe, N_hwe), and enzyme activities involved in C, N and P cycling in a loess-derived Chernozem from Bad Lauchstädt (Central Germany). The study site has been receiving the same fertilisation treatments for 100 years. The soil originated from plots fertilised with 15 t ha⁻¹ farmyard manure (FYM) year⁻¹ + mineral fertiliser (NPK), or 15 t ha⁻¹ FYM year⁻¹, or NPK or from an unfertilised control. Pots were sampled monthly, and alkaline phosphatase- (AP), β-glucosidase- and protease-activities were analysed. At the beginning and the end of study, levels of C_mic, C_hwe and N_hwe were also measured. All three enzyme activities and C_mic were significantly and positively correlated with C_org and C_hwe. Results suggest that the enzyme activities measured originated mostly from microorganisms and that C_hwe is an important C source for soil microorganisms. β-Glucosidase and AP activities were higher in summer months than at other times. In contrast, protease activity changed only slightly during the growing period.     

Accounting for variability in soil microbial communities of temperate upland grassland ecosystems

This study aimed to determine the factors which regulate soil microbial community organisation and function in temperate upland grassland ecosystems. Soil microbial biomass (C_mic), activity (respiration and potential carbon utilisation) and community structure (phospholipid fatty acid (PLFA) analysis, culturing and community level physiological profiles (CLPP) (Biolog^®)) were measured across a gradient of three upland grassland types; Festuca–Agrostis–Galium grassland (unimproved grassland, National Vegetation Classification (NVC) — U4a); Festuca–Agrostis–Galium grassland, Holcus–Trifolium sub-community (semi-improved grassland, NVC — U4b); Lolium–Cynosurus grassland (improved grassland, NVC — MG6) at three sites in different biogeographic areas of the UK over a period of 1 year. Variation in C_mic was mainly due to grassland type and site (accounting for 55% variance, v, in the data). C_mic was significantly (P<0.001) high in the unimproved grassland at Torridon (237.4 g C m⁻² cf. 81.2 g C m⁻² in semi- and 63.8 g C m⁻² in improved grasslands) and Sourhope (114.6 g C m⁻² cf. in 44.8 g C m⁻² semi- and 68.3 g C m⁻² in improved grasslands) and semi-improved grassland at Abergwyngregyn (76.0 g C m⁻² cf. 41.7 g C m⁻² in un- and 58.3 g C m⁻² in improved grasslands). C_mic showed little temporal variation (v=3.7%). Soil microbial activity, measured as basal respiration was also mainly affected by grassland type and site (n=32%). In contrast to C_mic, respiration was significantly (P<0.001) high in the improved grassland at Sourhope (263.4 l h⁻¹m⁻² cf. 79.6 l h⁻¹m⁻² in semi- and 203.9 l h⁻¹m⁻² unimproved grasslands) and Abergwyngregyn (198.8 l h⁻¹m⁻² cf. 173.7 l h⁻¹m⁻² in semi- and 88.2 l h⁻¹m⁻² unimproved grasslands). Microbial activity, measured as potential carbon utilisation, agreed with the respiration measurements and was significantly (P<0.001) high in the improved grassland at all three sites (A₅₉₀ 0.14 cf. 0.09 in semi- and 0.07 in unimproved grassland). However, date of sampling also had a significant (P<0.001) impact on C utilisation potential (v=24.7%) with samples from April 1997 having highest activity at all three sites. Variation in microbial community structure was due, predominantly, to grassland type (average v=23.6% for bacterial and fungal numbers and PLFA) and date of sampling (average v=39.7% for bacterial and fungal numbers and PLFA). Numbers of culturable bacteria and bacterial PLFA were significantly (P<0.001) high in the improved grassland at all three sites. Fungal populations were significantly (P<0.01) high in the unimproved grassland at Sourhope and Abergwyngregyn. The results demonstrate a shift in soil microbial community structure from one favouring fungi to one favouring bacteria as grassland improvement increased. Numbers of bacteria and fungi were also significantly (P<0.001) higher in August than any other sampling date. Canonical variate analysis (CVA) of the carbon utilisation data significantly (P<0.05) differentiated microbial communities from the three grassland types, mainly due to greater utilisation of sugars and citric acid in the improved grasslands compared to greater utilisation of carboxylic acids, phenolics and neutral amino acids in the unimproved grasslands, possibly reflecting substrate availability in these grasslands. Differences in C_mic, activity and community structure between grassland types were robust over time. In addition, broad scale measures of microbial growth and activity (C_mic and respiration) showed little temporal variation compared to measures of soil microbial community structure, which varied quantitatively with respect to environmental variables (temperature, moisture) and plant productivity, hence substrate supply.     

Soil microbial biomass C and N changes in relation to forest conversion in the Northwestern Turkey

Tree species differ in their effect on soil development and nutrient cycling. Conversion of beech coppice to pine plantations can alter soil physical and chemical properties, which in turn may have significant impacts on soil microbial biomass C and N (C_mic, N_mic). The major objective of this study was to evaluate soil quality changes associated with the forest conversion in humid NW Turkey. Results from this study showed that levels of soil organic carbon (C_org), total nitrogen (N_t), moisture, C_mic and N_mic under beech coppice were consistently higher but levels of pH, CaCO₃ and EC were lower compared to pine plantation. Differences between the forest stands in C_mic and N_mic were mainly related to the size of the C_org stores in soil and to tree species. In addition, high level of CaCO₃ is likely to reduce pools of soil organic C and possibly even microbial biomass C and N in pine forests. The average C_mic:N_mic ratios were higher in soils under beech coppice than pine plantation, while C_mic:C_org and N_mic:N_t percentages were similar in both forest types. These results revealed the differences in microbial community structure associated with different tree species and the complex interrelationships between microbial biomass, soil characteristics, litter quantity and quality. Copyright © 2008 John Wiley & Sons, Ltd.     

Influence of reduced tillage on earthworm and microbial communities under organic arable farming

Although reduced tillage is an agricultural practice reported to decrease soil erosion and external inputs while enhancing soil fertility, it has still rarely been adopted by European organic farmers. The objective of this study was to assess the long-term interactive effects of tillage (conventional (CT) vs. reduced (RT)) and fertilization (slurry (S) vs. composted manure/slurry (MCS)) on earthworms and microbial communities in a clay soil under spelt in an organic 6-year crop rotation. Earthworm populations (species, density and biomass, cocoons) were investigated by handsorting the soil nine years after initial implementation of the treatments. Soil microbial carbon (C_mic) and nitrogen (N_mic) were measured by chloroform-fumigation extraction and a simplified phospholipid fatty acid (PLFA) analysis was used to separate for populations of bacteria, fungi and protozoa. Significantly increased total earthworm density in RT plots was mainly attributed to increased numbers of juveniles. Moreover, we found five times more cocoons with RT. Species richness was not affected by the treatments, but tillage treatments had differentially affected populations at the species-level. In addition, cluster analysis at the community level revealed two distinct groups of plots in relation to tillage treatments. In RT plots C_mic increased in the 0–10 cm and 10–20 cm soil layers, while PLFA concentrations indicative of Gram-negative bacteria, fungi and protozoa only increased in the topsoil. Lower bacteria-to-fungi ratios in the upper soil layer of RT plots indicated a shift to fungal-based decomposition of organic matter whereas a higher C_mic-to-C_org ratio pointed towards enhanced substrate availability. Slurry application decreased microbial biomass and enhanced density of juvenile anecic earthworms but overall fertilization effect was weak and no interactions with tillage were found. In conclusion, tillage is a major driver in altering communities of earthworms and microorganisms in arable soils. The use of reduced tillage provides an approach for eco-intensification by enhancing inherent soil biota functions under organic arable farming.     

Impact of reduced tillage on carbon and nitrogen storage of two Haplic Luvisols after 40 years

It is broadly accepted that reduced tillage increases soil organic carbon (C_org) and total nitrogen (N) concentrations in arable soils. However, the underlying processes of sequestration are not completely understood. Thus, our objectives were to investigate the impact of a minimum tillage (MT) system (to 5–8 cm depth) on aggregates, on particulate organic matter (POM), and on storage of C_org and N in two loamy Haplic Luvisols in contrast to conventional tillage (CT) (to 25 cm). Surface soils (0–5 cm) and subsoils (10–20 cm) of two experimental fields near Göttingen, Germany, were investigated. Each site (Garte-Süd and Hohes Feld) received both tillage treatments for 37 and 40 years, respectively. In the bulk soil of both sites C_org, N, microbial carbon (C_mic), and microbial N (N_mic) concentrations were elevated under MT in both depths. Likewise, water-stable macroaggregates (>0.25 mm) were on average 2.6 times more abundant under MT than under CT but differences in the subsoils were generally not significant. For surface soils under MT, all aggregate size classes <1 mm showed approx. 35% and 50% increased C_org concentrations at Garte-Süd and Hohes Feld, respectively. For greater macroaggregates (1–2, 2–10 mm), however, differences were inconsistent. Elevations of N concentrations were regular over all size classes reaching 61% and 52%, respectively. Density fractionation of the surface soils revealed that tillage system affected neither the yields of free POM nor occluded POM nor their C_org and N concentrations. Moreover, more C_org and N (15–238%) was associated within the mineral fractions investigated under MT in contrast to CT. Overall, similar to no-tillage, a long-term MT treatment of soil enhanced the stability of macroaggregates and thus was able to physically protect and to store more organic matter (OM) in the surface soil. The increased storage of C_org and N did not occur as POM, as reported for no-tillage, but as mineral-associated OM.     

Effect of litter quality and soil fungi on macroaggregate dynamics and associated partitioning of litter carbon and nitrogen

We investigated the effect of plant residue decomposability and fungal biomass on the dynamics of macroaggregate (250–2000 μm) formation in a three months' incubation experiment and determined the distribution of residue-derived C and N in the microbial biomass and in aggregate size fractions (250–2000 μm, 53–250 μm and <53 μm) using ¹³C and ¹⁵N data. A silty loam soil (sieved <250 μm) was incubated with and without addition of ¹⁵N labelled maize leaves (C/N = 27.4) and roots (C/N = 86.4). Each treatment was carried out with and without fungicide application. The addition of maize residues enhanced soil respiration and microbial biomass C and N and resulted in increased macroaggregate formation with a higher and more rapid maximum macroaggregation in the soil amended with maize leaves than in that with addition of roots. Fungicide application led to a significant decline of microbial biomass C and mineralization of the added residues compared to untreated soils, which demonstrates a successful suppression of part of the active microbial biomass by the fungicide. However, this was not confirmed by a generally lower ergosterol concentration. Consequently, ergosterol was no reliable fungal biomarker in periods of rapid decline of the fungal biomass. A single addition of fungicide was insufficient for continued inhibition of the fungal biomass. Yet, a significant delay (28–42 days) in macroaggregation in fungicide treated compared to untreated samples highlighted the importance of the fungal biomass in macroaggregate formation. Macroaggregates were enriched in maize-derived ¹³C and ¹⁵N compared to microaggregates or the fraction < 53 μm. They turned over rapidly with decreasing substrate availability, which entailed a transfer of maize-derived C and N stored within macroaggregates during the first weeks of incubation to microaggregates with proceeding incubation time. Our results indicate that this transfer happened within macroaggregates, because no considerable amount of free particulate organic matter (POM) was released upon macroaggregate breakdown. We conclude that substrate decomposability and fungal activity are key factors determining extent and dynamics of macroaggregation during decomposition processes. Macroaggregate formation implied rapid incorporation and thereby short-term protection of maize-derived C and N. Moreover, macroaggregates allowed a transfer of maize-derived organic matter into microaggregates within macroaggregates, which prevented the release of significant amounts of free POM upon macroaggregate breakdown. Consequently, macroaggregates constitute to the transfer of recently added C into more stable soil organic matter fractions.     

Formation and use of microbial residues after adding sugarcane sucrose to a heated soil devoid of soil organic matter

A 67-day incubation experiment was carried out with a soil initially devoid of any organic matter due to heating, which was amended with sugarcane sucrose (C₄-sucrose with a δ¹³C value of ?10.5‰), inorganic N and an inoculum for recolonisation and subsequently at day 33 with C₃-cellulose (δ¹³C value of ?23.4‰). In this soil, all organic matter is in the microbial biomass or in freshly formed residues, which makes it possible to analyse more clearly the role of microbial residues for decomposition of N-poor substrates. The average δ¹³C value over the whole incubation period was ?10.7‰ in soil total C in the treatments without C₃-cellulose addition. In the CO₂ evolved, the δ¹³C values decreased from ?13.4‰ to ?15.4‰ during incubation. In the microbial biomass, the δ¹³C values increased from ?11.5‰ to ?10.1‰ at days 33 and 38. At day 67, 36% of the C₄-sucrose was left in the treatment without a second amendment. The addition of C₃-cellulose resulted in a further 7% decrease, but 4% of the C₃-cellulose was lost during the second incubation period. Total microbial biomass C declined from 200 μg g^?1 soil at day 5 to 70 μg g^?1 soil at day 67. Fungal ergosterol increased to 1.5 μg g^?1 soil at day 12 and declined more or less linearly to 0.4 μg g^?1 soil at day 67. Bacterial muramic acid declined from a maximum of 35 μg g^?1 soil at day 5 to a constant level of around 16 μg g^?1 soil. Glucosamine showed a peak value at day 12. Galactosamine remained constant throughout the incubation. The fungal C/bacterial C ratio increased more or less linearly from 0.38 at day 5 to 1.1 at day 67 indicating a shift in the microbial community from bacteria to fungi during the incubation. The addition of C₃-cellulose led to a small increase in C₃-derived microbial biomass C, but to a strong increase in C₄-derived microbial biomass C. At days 45 and 67, the addition of N-free C₃-cellulose significantly decreased the C/N ratio of the microbial residues, suggesting that this fraction did not serve as an N-source, but as an energy source.     

Dynamics of litter carbon turnover and microbial abundance in a rye detritusphere

Factors determining C turnover and microbial succession at the small scale are crucial for understanding C cycling in soils. We performed a microcosm experiment to study how soil moisture affects temporal patterns of C turnover in the detritusphere. Four treatments were applied to small soil cores with two different water contents (matric potential of ?0.0063 and ?0.0316 MPa) and with or without addition of ¹³C labelled rye residues (δ¹³C=299‰), which were placed on top. Microcosms were sampled after 3, 7, 14, 28, 56 and 84 days and soil cores were separated into layers with increasing distance to the litter. Gradients in soil organic carbon, dissolved organic carbon, extracellular enzyme activity and microbial biomass were detected over a distance of 3 mm from the litter layer. At the end of the incubation, 35.6% of litter C remained on the surface of soils at ?0.0063 MPa, whereas 41.7% remained on soils at ?0.0316 MPa. Most of the lost litter C was mineralised to CO₂, with 47.9% and 43.4% at ?0.0063 and ?0.0316 MPa, respectively. In both treatments about 6% were detected as newly formed soil organic carbon. During the initial phase of litter decomposition, bacteria dominated the mineralisation of easily available litter substrates. After 14 days fungi depolymerised more complex litter compounds, thereby producing new soluble substrates, which diffused into the soil. This pattern of differential substrate usage was paralleled by a lag phase of 3 days and a subsequent increase in enzyme activities. Increased soil water content accelerated the transport of soluble substrates, which influenced the temporal patterns of microbial growth and activity. Our results underline the importance of considering the interaction of soil microorganisms and physical processes at the small scale for the understanding of C cycling in soils.     

Discrete functional pools of soil organic matter in a UK grassland soil are differentially affected by temperature and priming

We show that both temperature and priming act differently on distinct C pools in a temperate grassland soil. We used SOM which was ¹⁴C-labelled in four different ways: by labelling soil with ¹⁴C-glucose, by adding leaf litter from plants pre-labelled with ¹⁴CO₂, and by labelling in situ with ¹⁴CO₂ applied to the ryegrass canopy either 6 or 18 months earlier. Samples of each type of ¹⁴C labelled soil were incubated at either 4, 10, 15, or 20 °C and the exponential loss of ¹⁴CO₂ used to characterise treatment effects. ¹⁴C allocation to microbial fractions was greater, and so overall mineralization by microbes was greater, as temperature rose, but turnover of the microbial labile pool was temperature-insensitive, and the turnover of microbial structural material was reduced as temperature rose. The ability of the microbial population to degrade just one fraction of plant litter was increased greatly by temperature. A pool of SOM with a half-life of about 70 d was degraded faster at higher temperatures. Less tractable but abundant pools of SOM were not accessed more readily at higher temperatures by the microbial population. Priming with glucose or amino-acids only speeded the mineralization of recent SOM (probably from the living microbial biomass), and was not altered by temperature. These results have implications for the impacts of climate change on soil C cycling.     

Mechanisms of short-term soil carbon storage in experimental grasslands

We investigated the fate of root and litter derived carbon in soil organic matter and dissolved organic matter in soil profiles, in order to explain mechanisms of short-term soil carbon storage. A time series of soil and soil solution samples was investigated at the field site of The Jena Experiment between 2002 and 2004. In addition to the main experiment with C3 plants, a C4 species (Amaranthus retroflexus L.) naturally labeled with ¹³C was grown on an extra plot. Changes in organic carbon concentration in soil and soil solution were combined with stable isotope measurements to follow the fate of plant carbon into the soil and soil solution. A split plot design with plant litter removal versus double litter input simulated differences in biomass input. After 2 years, the no litter and double litter treatment, respectively, showed an increase of 381 g C m^?2 and 263 g C m^?2 to 20 cm depth, while 71 g C m^?2 and 393 g C m^?2 were lost between 20 and 30 cm depth. The isotopic label in the top 5 cm indicated that 115 g C m^?2 and 156 g C m^?2 of soil organic carbon were derived from C4 plant material on the no litter and the double litter treatment, respectively. Without litter, this equals the total amount of 97 g C m^?2 that was newly stored in the same soil depth, whereas with double litter this clearly exceeded the stored amount of 75 g C m^?2. Our results indicate that litter input resulted in lower carbon storage and larger carbon losses and consequently accelerated turnover of soil organic carbon. Isotopic evidence showed that inherited soil organic carbon was replaced by fresh plant carbon near the soil surface. Our results suggest that primarily carbon released from soil organic matter, not newly introduced plant organic matter, was transported in the soil solution. However, the total flow of dissolved organic carbon was not sufficient to explain the observed carbon storage in deeper soil layers, and the existence of additional carbon uptake mechanisms is discussed.     

Microbial utilization and mineralization of [14C]glucose added in six orders of concentration to soil

The substrate availability for microbial biomass (MB) in soil is crucial for microbial biomass activity. Due to the fast microbial decomposition and the permanent production of easily available substrates in the rooted top soil mainly by plants during photosynthesis, easily available substrates make a very important contribution to many soil processes including soil organic matter turnover, microbial growth and maintenance, aggregate stabilization, CO₂ efflux, etc. Naturally occurring concentrations of easily available substances are low, ranging from 0.1 μM in soils free of roots and plant residues to 80 mM in root cells. We investigated the effect of adding ¹⁴C-labelled glucose at concentrations spanning the 6 orders of magnitude naturally occurring concentrations on glucose uptake and mineralization by microbial biomass. A positive correlation between the amount of added glucose and its portion mineralized to CO₂ was observed: After 22 days, from 26% to 44% of the added 0.0009 to 257 μg glucose C g^?1 soil was mineralized. The dependence of glucose mineralization on its amount can be described with two functions. Up to 2.6 μg glucose C g^?1 soil (corresponds to 0.78% of initial microbial biomass C), glucose mineralization increased with the slope of 1.8% more mineralized glucose C per 1 μg C added, accompanied by an increasing incorporation of glucose C into MB. An increased spatial contact between micro-organisms and glucose molecules with increasing concentration may be responsible for this fast increase in mineralization rates (at glucose additions <2.6 μg C g^?1). At glucose additions higher than 2.6 μg C g^?1 soil, however, the increase of the glucose mineralization per 1 μg added glucose was much smaller as at additions below 2.6 μg C g^?1 soil and was accompanied by decreasing portions of glucose ¹⁴C incorporated into microbial biomass. This supports the hypothesis of decreasing efficiency of glucose utilization by MB in response to increased substrate availability in the range 2.6–257 μg C g^?1 (=0.78–78% of microbial biomass C). At low glucose amounts, it was mainly stored in a chloroform-labile microbial pool, but not readily mineralized to CO₂. The addition of 257 μg glucose C g^?1 soil (0.78 μg C glucose μg^?1 C micro-organisms) caused a lag phase in mineralization of 19 h, indicating that glucose mineralization was not limited by the substrate availability but by the amount of MB which is typical for 2nd order kinetics.     

Litter quality effects on soil carbon and nitrogen dynamics in temperate alley cropping systems

Microcosm and litterbag experiments were conducted to determine the effects of litter quality, soil properties and microclimate differences on soil carbon (C) and nitrogen (N) mineralization in alley cropping systems. Bulk soils were collected from 0 to 20 cm depth at three sites: a 21-year old pecan (Carya illinoinensis)/bluegrass (Poa trivialis) intercrop (Pecan site) in north-central Missouri, a 12-year old silver maple (Acer saccharinum)/soybean (Glycine max)–maize (Zea mays) rotation (Maple site) in northeastern Missouri and a restored prairie site (MDC site) in southwestern Missouri. Seven tree and crop litters with varying composition were collected, including pecan, silver maple, chestnut and walnut leaf litter (tree litter) and maize, soybean and bluegrass residues (crop litter). Aerobic microcosm incubations were maintained at 25 °C and a soil water potential of −47 kPa. Unamended MDC soil mineralized 24 and 18% more CO₂ than the Pecan and Maple soils, respectively. Soil amended with crop litter mineralized on average 32% more CO₂ than when amended with tree litter. Net N mineralization from soybean litter was 40 mg kg⁻¹, while all other litter immobilized N for various durations. A double pool and a single pool model best described C and N mineralization from amended soils, respectively. Cumulative CO₂ mineralized, labile C fraction (C₁) and potentially mineralizable C (C₀) were correlated to litter total N and lignin contents and to (lignin + polyphenol):N ratio. In the field, bluegrass litter decomposed and released N twice as fast as pecan leaf litter. Soybean, maize and silver maple litter released 84, 75 and 63% of initial N, respectively, 308 days after field placement, while no differences in mass loss was observed among the three litter materials. At the Maple site, mass and N remaining, 308 days after field placement was lower at the middle of the alley, corresponding to higher soil temperature and water content. No differences in mass loss and N release patterns were observed at the Pecan site. Microclimate and litter quality effects can lead to differences in nutrient availability in alley cropping systems.