Endophytes from maize with plant growth promotion and biocontrol activity under drought stress

In the present study, 39 endophytic bacteria were isolated from different crops with main focus on maize roots and seeds. Endophytes were screened for drought stress tolerance, plant growth promoting (PGP) traits and antifungal activity. Out of 39 isolates, 32 could show drought tolerance up to–1.02 matric potential (MPa) and exhibited most of the plant growth promoting traits. But, only five isolates could show antagonistic activity against plant fungal pathogens. Based on the results, 10 promising isolates namely FTR, NFTR, FMZR9, FMZR2, MZ30V92, MRC12, MRC31, MRC33, MRC41 and MRR2 were selected and identified using biochemical and 16S rDNA gene sequencing as Pseudomonas aeruginosa (strains FTR and NFTR), Pseudomonas monteilii (strain FMZR2), Pseudomonas putida (strain FMZR9), Acitenobacter brumalii (strain MZ30V92), Enterobacter asburiae (strain MRC12), Sinorhizobium meliloti (strain MRC31), Pseudomonas thivervalensis (strain MRC33), Pseudomonas fulva (strain MRC41), and Pseudomonas lini (strain MRR2). Further, at–1.02 MPa all the 10 isolates showed PGP traits, and 3 isolates (FTR, NFTR and MRC12) showed antifungal activity. Thus, indicating that drought tolerant plant growth promoting antagonistic endophytic bacteria (PGPAE) helps in plant growth and disease management under drought stress.     

Genetic diversity of genus <Emphasis Type="Italic">Malus</Emphasis> Mill. for scab resistance genes

The results of molecular genetic analysis of wild species and varieties of genus Malus Mill. for loci of monogenic scab resistance are presented. Dominant allele of gene Rvi6 was identified in varieties of M. robusta 43199, M. hupehensis, and M. floribunda. Locus Rvi4 was detected in genotypes of M. robusta v. persicifolia, M. asiatica 2343, M. sieversii 13280, M. niedzwetzkyana 13279, M. purpurea 2392, M. orientalis 41623, M. orientalis 29476, M. orientalis 29 460, M. spectabilis v. albi plena, and M. spectabilis v. rubra plena. Gene Rvi5 in the test collection of wild species is absent.     

Distribution of Fungi from the Genus <Emphasis Type="Italic">Fusarium</Emphasis> Link. on Cereals

The species composition of fungi from the genus Fusarium was studied, and the frequency of occurrence on cereals was determined. Populations of Fusarium spp. were represented by widespread species F. culmorum, F. heterosporum, F. sporotrichioides, F. oxysporum, F. nivale, F. graminearum, F. avenacеum, F. gibbosum, F. sambucinum, F. moniliforme, etc. The dynamics and frequency of occurrence of Fusarium spp. has made it possible to characterize the state of the species of fungi in a wide range of climatic areas of cereal cultivation in the Russian regions. The prevalence of the genus Fusarium was caused by the cultivars’ susceptibility to micromycetes. The frequency of occurrence of Fusarium species isolated from roots was steady, and, on the ears, it depended on the influence of weather conditions during the growing season of plants. The study of the intraspecific variability of fungi from the genus Fusarium has revealed a significant difference in signs of toxicity and pathogenicity depending on biotic and abiotic factors. More than 50% of strains from the genus Fusarium possessed low pathogenicity but had severe toxicity to wheat seedlings. Most strains of F. sporotrichiodes, F. culmorum, and F. sambucinum were highly pathogenic (from 36.4 to 55.6%) and toxic (from 55.6 to 81.3%). High adaptability to preservation in the soil and on the roots of weeds and crop residues of most crops expressing pathogenic and toxic activity was conductive to the widespread Fusarium spp.     

Effect of <Emphasis Type="Italic">GH</Emphasis> and <Emphasis Type="Italic">DGAT1</Emphasis> gene polymorphism on feeding qualities of bull calves

The aim of this paper is to study effects of GH and DGAT1 gene polymorphisms on feeding qualities of Hereford and Limousin bull calves bred in conditions of the Cis-Ural steppe zone. SNPs of genes GH and DGAT1 are investigated by polymerase chain reaction (PCR) and DNA restriction fragment length polymorphism (RFLP). The studied population of animals was assessed by defining the allele frequency and animal genotype occurrence for the studied gene SNPs, indicators of the actual and expected heterozygosity, and Pearson’s test. A study of polymorphism C214G of gene GH revealed that genotype LL prevails in Hereford and Limousin animals, 47.37 and 57.7%, respectively, while frequency of allele L is higher in Limousin bull calves (0.731). A study of polymorphism K232A of gene DGAT1 gene in both the populations showed absence of genotypes AA, which can be related to the low number of the studied animals. Expected heterozygosity indicators of gene GH are higher than the observed ones, and the observed heterozygosity is higher for DGAT1. The number of efficient alleles for the studied genes is higher for Hereford bull calves. In general, according to Pearson’s test, both the studied populations are in equilibrium. There is a significant effect of GH gene polymorphism on live weight gain rates at the end of sagination and total and average daily weight gains during animal raising.     

Agronomic Evaluation of Legume Cover Crops for Sustainable Agriculture

The agronomic characteristics of different legume cover crops and their effects on soil chemical properties were investigated in a short-term field study. We compared weed biomass, nitrogen equivalence, growth rate, leaf chlorophyll content, cover crop biomass, soil total organic carbon, and soil total nitrogen under eight different legume cover crops in a short-term field experiment. We found the highest growth rate, cover crop dry biomass, N plant content, and N contribution with C. ochroleuca plants, whereas for leaf chlorophyll content, soil organic carbon, and total nitrogen the highest values were found with M. pruriens. We did not find any significant difference among C. ochroleuca and M. pruriens for cover crop dry biomass. Our findings suggest that the incorporation of cover crops into the soil can change positively the soil chemical properties, such as soil organic carbon and total nitrogen. Our results also highlight the importance of considering the short-term effect of cover crops on the tropical soil fertility maintenance, in this case, Regosol.     

Effect of sterile cytoplasm types on pigment content in leaves of F<Subscript>1</Subscript> grain sorghum hybrids

Differences are found in the content of chlorophylls a and b and carotenoids in green leaves of F₁ grain sorghum hybrids obtained on the basis of alloplasmic lines with genetically different types of CMS-inducing cytoplasms. Sterile cytoplasms A2, A4, and 9E cause a considerably higher content of chlorophylls in hybrids than cytoplasm A1 traditionally used in breeding sorghum.     

Founder effect and genogeography of <Emphasis Type="Italic">CV</Emphasis>- and <Emphasis Type="Italic">BL</Emphasis>-mutations in black-and-white cattle

The results are obtained by simultaneous diagnostics of mutant CV- and BL-alleles. Five groups of animals–carriers and noncarriers of mutations are identified. In Russia the mutant CV-alleles are met more frequently because of the intensive use of their carriers. While elimination of BL-allele was started earlier due to developed methods, the diagnostics of CV-mutations has been undertaken later. Propagation of missense-mutations in the world and the Russian Federation has been occurring through the breeding bulls and cows–carriers. Initially spermobanks and, afterwards, cows were reserves for the diagnosed BLand CV-mutations.     

The Relationship between Drought Tolerance of <Emphasis Type="Italic">Laurus nobilis</Emphasis> L. and Environmental Factors in Conditions of the Southern Coast of Crimea

The present studies have shown Laurus nobilis L. to be a drought tolerant species. When the plant was first subjected to dehydration, the rate of net photosynthesis decreased from Pn = (8–10) to –1 μmol/(m² s) and to –3 μmol/(m² s) during the second dehydration before it was subsequently irrigated. The rewatering on August 5 and August 8 promoted a sharp burst of this parameter, but the Pn value was restored to its original level only after August 8. Soil drought caused a drop in a rate of transpiration from 65–70 to 10 mg/(m² s). Watering soil up to a 15% moisture level brought an increase in E = 25 mg/(m² s), but only the second watering managed to fully restore it to the initial value. Apical growth of the plants was closely correlated with soil moisture. As the soil moisture was reduced to W = 15–5%, the terminal growth reached a saturation point and started to plateau. Watering the soil up to W = 15% promoted apical growth by 4 mm. Reducing soil moisture to W = 3–4% caused a complete cessation of the growth. Subsequent watering to W = 27–28% led to a gradual and complete recovery of turgor and an increase in the growth rate up to 6–8 mm per day. The surface response functions Pn = f(I, W) and E = f(I, W) allowed us to determine conditions and levels of potential maximums and boundaries of the areas of optimum photosynthesis and transpiration: optimum Pn = 8–9 μmol/(m² s) with I = 900–1400 μmol/(m² s) and W = 17–24% and the optimum E = 25–35 mg/(m² s) with I = 1000–1400 μmol/(m² s) and W = 16–24%.     

Effect of the <Emphasis Type="Italic">PGR</Emphasis> Genotype on Economically Valuable Traits in Animals of the Holstein Breed

Genotyping for locus PGR (progesterone receptor gene) of the Holstein servicing bulls (World Wide Sires) was carried out. The frequencies of alleles and genotypes of this locus are given. Significant (P < 0.05) superiority of the homozygous genotype AA of locus PGR was found in relation to the heterozygous genotype AG for several economically valuable traits: PTAM (predicted transmitting ability for milk, 380 points), PL (productive life, by 1.3 months), and FE (feed cost–feeding efficiency index, 37 points). Significant superiority (P < 0.05) of the homozygous genotype GG over the heterozygous genotype AG for the PL trait was also found, by 1.2 months. The obtained data can be used for marker-dependent breeding.     

Influence of polymorphism of <Emphasis Type="Italic">R25C</Emphasis> and <Emphasis Type="Italic">Y7F</Emphasis> loci of the leptin gene on the duration of economic use of the Ayrshire cattle

Two successive genotypings (in 2014 and 2017) of the leptin gene (LEP) by the R25C and Y7F loci were conducted in the herd of the Ayrshire cattle of the Niva Farm of Krasnodar Krai in order to study the influence of polymorphism of these loci on the duration of the economic use. DNA samples (n = 154) isolated from blood of animals with different periods of economic use have been analyzed. The need for genotyping in 2017 arose because of the ambiguous interpretation of the findings obtained in 2014. A higher frequency of occurrence of the RR genotype of the LEP in the group of long-livers could be explained both by better preservation of animals with the RR genotype and by random gene drift (in particular, by larger share of breeder bulls, the carriers of the R allele). It was found that, as in 2014, a group of long-liver cows genotyped in 2017 differed from the group of young cows genotyped in 2014 in the occurrence frequency of the RR genotype, which was doubled. Consequently, regardless of the experimental conditions, animals of this particular group may have a longer productive life. It has also been established that the polymorphism at the Y7F locus does not have a significant effect on the duration of the economic use of the Ayrshire cows.     

Breed characteristics associated with <Emphasis Type="Italic">LEP</Emphasis> gene polymorphisms in Holstein cattle

Genotyping of the leptin gene locus (LEP) (SNP: R25C, Y7F, and A80V) has been performed in the animals from two groups in the Holstein cattle herd. Groups 1 and 2 included the fourth to seventh lactation cows and the heifers, respectively. The objective of the surveys was to study the Holstein cattle polymorphisms of the leptin gene associated with the productive longevity according to the related literature data. It has been ascertained that the LEP gene (SNP: R25C, Y7F, and A80V) polymorphism in the Holstein animals determines the certain breed characteristics that can be used for introduction to marker assisted selection. (Particularly, a low (0.04–0.15) frequency of occurrence of the F allele is typical for the LEP-Y7F SNP; as for SNP LEP-A80V, a low frequency of occurrence (0–0.14) is typical for the homozygous animals with the VV genotype when compared to a rather high frequency of occurrence (0.36–0.45) in the heterozygous animals).     

Genetic differentiation of the Novosibirsk population of Primorsky honey bee

Seven microsatellite loci were evaluated to compare the allele pool of Primorsky honeybee population (n = 90), which was introduced into the Novosibirsk region (south-western Siberia), with the populations of Middle Russian (n = 191, A.m. mellifera), Mountain Grey Caucasian (n =113, A.m. caucasica), Carniolan (n = 61, A.m. carnica) and Carpathian (n = 184, A.m. carpatica) races. The degree of genetic differentiation in Novosibirsk population using a variety of criteria (Fst, Rst (AMOVA), Nei genetic distances) was evaluated.     

Endophytic bacteria of woody plants as the basis of complex microbial preparations for agriculture and forestry

The literature review focuses on endophytic bacteria inhabiting woody plants. Endophytic bacteria for genera Pseudomonas, Bacillus, Paenibacillus, Burkholderia, and Erwina are shown to be found in almost all woody tissues. In additional, endophytic bacteria have been found in reproductive plant organs. It is shown that endophytic bacteria have functional properties that are useful for host plants: the ability to fix atmospheric nitrogen, produce growth simulating and biocontrol substances, and to induce systemic resistane of plants to biotic and abiotic stresses. Endophytic bacteria are a major part of the microbiome of woody plants, possess valuable functional properties of host plants, and are a promising biotechnological resource for the development of complex microbial preparations for agriculture and forestry.     

Study of intracellular ion composition of yeast <Emphasis Type="Italic">Saccharomyces cerevisiae</Emphasis> biomass

The ionic composition of the of the intracellular content of the alcohol yeast Saccharomyces cerevisiae R. 1039 biomass was studied for confirmation of their use perspectiveness as a mediator to enable the management the mineral content of food in the manufacture of food and feed additives. The ionic composition of the obtained extracts were identified using the method of capillary electrophoresis. It is found that the quantitative ion content in the cell extracts depends on the concentration of the nutrient medium. When the yeast S. cerevisiae R. 1039 was cultivated on the medium with the soluble solids concentration of 30%, the intracellular ion content in the extracts was 1.3 times higher than when the yeast was cultivated on 12% wort by increasing the concentration of chlorides, sulfates, formates, potassium ions, and calcium. The yield of the yeast S. cerevisiae R. 1039 biomass increased 1.6 times per unit of volume of the medium with increase of the soluble solids concentrations from 12% to 30%.     

Genetic Diversity of <Emphasis Type="Italic">E. coli O157:H7</Emphasis> Isolated from Some Leafy Greens,Irrigated by Aleppo River,Using Random Amplified Polymorphic DNA (RAPD) Marker

In recent years, fresh fruits and vegetables have been linked to numerous foodborne illness outbreaks in different regions of the world. In Syria, there is not a lot of research that study E. coli and its serotypes by PCR technology. In this study, we have fulfilled a total count of bacteria, the census total coliform group, and Escherichia coli, as well as the serotype E. coli O157:H7 on some leafy greens (Spinacia oleracea, Beta vulgaris) irrigated by Aleppo River. The molecular characterization was done for ten strains of E. coli isolated from collected samples. The samples were inoculated on blood agar and suspicious colonies, then transferred to EMB and MacConkey agar using a primer (COL 1) in RAPD technic. Molecular characterization also performed ten strains of serotype E. coli O157:H7 isolated in medium (Sorbitol-MacCONKEY Agar), then by primers (OPA-03, OPA-13 OPC-12, OPE-20) in RAPD technic. The results showed significant differences between collected samples. The total count of bacteria in the first site (Handarat) for spinach and chard were the lowest, but in the fourth site (Jezraya) it was the highest among all samples. The results showed also the existence of E. coli in all sites except the first one in riverbed Handarat, and E. coli O157:H7 was found only in Jezraya village. Extracted DNA from samples was amplified by RAPD. after electrophoresis in the gel agarose, eleven different bands were detected from isolated strains of E. coli. These results refer to the great genetic diversity of Escherichia coli. For serotype E. coli O157:H7 thirty-four different bands were detected. RAPD analysis had the high discriminatory capacity for typing E. coli isolates. Because of its simplicity and rapidity, RAPD analysis appears to be a highly valuable tool for studying E. coli molecular epidemiology.     

Development of Soil-Borne Infections in Spring Wheat and Barley as Influenced by Hydrothermal Stress in the Forest-Steppe Conditions of Western Siberia and the Urals

This is a first-time assessment of the direct and indirect effects of hydrothermal conditions on pathogenesis of root infections in cultivated varieties of spring wheat and barley. Long-term field research (2000–2015) was carried out in the area of risk farming combined with laboratory experiments. The effects of the phytosanitary condition of soil, seeds, and underground plant organs were taken into account. It was found that soil pathogenic population and the development of soil-borne infections largely depend on hydrothermal factors. The development of root rot of spring wheat was stimulated by arid conditions during tillering and heading: the disease rate was increased by 33.5% compared to the optimal moisture supply against a background of a high plant pathogen population of the soil. In drought conditions, the number of saprotrophic microorganisms decreased 3.3 times and suppressive soil activity fell 3.0 times provoking root infections. Microorganisms consuming inorganic forms of nitrogen and cellulolytic agents were found to be highly sensitive to hydrothermal factors. Arid conditions increased the plants’ susceptibility to the inoculum of soil origin, since the increase in the number of conidia in the inoculum from 5–15 to 150–180 per 1 g of soil increased the frequency of infections by root rots by 7.8 times, especially on the epicotyl and the base of the stem. Damage of root rot was increased by pest flies Oscinella frit L., O. pusilla Mg., Phorbia genitalis Schnb., and Mayetiola destructor Say. Their activity increased in warm, arid conditions. Drought-resistant gramineous weeds Panicum miliaceum ssp. ruderales L. (Kitag.) Tzvei., Setaria glauca (L.) Beauv., Avena fatua L., Setaria viridis (L.) Beauv. competed with the crop and consequently increased the development of root rot by 20% or more in dry years. Seeds of gramineous weeds, multiplied after dry years, contributed to reproduction and survival of many soil-borne phytopathogens. Grain ripening in moistened conditions led to transmission of the root rot agents Bipolaris sorokiniana Sacc. Shoem. (syn. Helminthosporium sativum Pam., King et Bakke) and Fusarium fungi via seeds. This led to proliferation of root rot in the germination phase and significantly (53%) affected the cereals’ germ.     

Likely threat of the spread of race UG99 of <Emphasis Type="Italic">Puccinia graminis</Emphasis> f. sp. <Emphasis Type="Italic">tritici</Emphasis> on wheat in southeastern Russia

In 2013 and 2014, a Ug99 race virulent to the resistance gene Sr31 was revealed on spring bread wheat fields in Saratov oblast and its inoculum was collected under conditions of stem rust epiphytoties (with the fungus Puccinia graminis f. sp. tritici acting as an agent). In March to April 2015, when a set of soft wheat lines was artificially inoculated in a climatic chamber, the virulence of the collected inoculum to gene Sr31 was confirmed, and four monopustular clones were isolated. Based on the isolated monopustular clones of Puccinia graminis f. sp. tritici, an assessment for resistance of four lines of spring soft wheat to novel Sr-gene combinations was made.     

Intervalent Crosses: the Main Way of Creating Triploid Apple Cultivars

This paper presents history and ways of creating triploid apple cultivars differing from common diploid ones by less pronounced fruiting periodicity by years, higher marketability and weight of fruits, and self-fertility. In the search for an effective method of mass production of triploid seedlings, crosses of the type 4x × 4x, 4x × 3x, 4x × 2x, 3x × 4x, 3x × 3x, 3x × 2x, 2x × 4x, and 2x × 3x were studied. The most effective way of mass production of triploid seedlings was the 2x × 4x cross (diploid × tetraploid). In the group of 2x × 4x crosses, more than 9000 seedlings from different families were subjected to cytological analysis. The ratio of hybrid progeny in terms of ploidy levels was as follows: 30.3% diploids, 69.5% triploids, 0.2% tetraploids, and 0.04% aneuploids. It was established that triploids can also be obtained in 4x × 2x crosses; however, it is necessary to castrate the flowers in the maternal parent, since all apple tetraploids have high self-fertility. For the first time in the world, a series of triploid cultivars (approximately 20) was obtained from intervalent crosses of the diploid × tetraploid type in the All-Russia Research Institute of Fruit Crop Selection. Particularly interesting are triploid cultivars that have immunity to scab, which include nine cultivars, of which Aleksandr Boiko, Vavilovskoe, Maslovskoe, and Yablochnyi Spas are included in the State Register of breeding achievements allowed for use.     

Genetic diversity analysis in <Emphasis Type="Italic">Plantago ovata</Emphasis> and some of its wild allies using RAPD markers

Plantago ovata, commonly called as the 'desert Indian wheat' is a cultivated and economically important plant of the genus Plantago, a large genus containing ~200 species. It yields Psyllium (Isabgol) which has several health benefits and applications in pharmaceutical, food and cosmetic industries. In view of the genetic uniformity, detection of variability has remained a challenge in this species as the plant lacks inherent variability and has a narrow genetic base. During the present study, Random amplified polymorphic DNA (RAPD) was used to determine genetic relationship and detect whatever little hidden variation exists in this species and some of its wild allies. Limited genetic variability was observed in P. ovata whereas; extensive genetic variability was seen in its wild allies. The genetic distances among different accessions of P. ovata and different species of Plantago, were used to generate a dendrogram.     

Genetic shifts in selection of hybrid offspring soybeans to economic-valuable signs

The article presents the importance of plant genetic hybrid shift in the elements of productivity, allowing the prediction of the conduct in the selection of promising lines obtained by interspecific hybridization spontaneous soybeans for further study in the selection process. The maximum shift of genetic selection on the basis of elements of efficiency in terms of the number of marked beans in combinations Volzhan × KZ-671, KZ-Rosinka × 1236, and Luch nadezhdy × KZ-6332 in terms of the mass of 1000 seeds only in the combination Luch nadezhdy × KZ-6332.