Livestock loss caused by predators outside the Serengeti National Park, Tanzania

Human-carnivore conflict is a serious management issue often causing opposition towards conservation efforts. In a survey of 481 households in seven different villages outside the Serengeti National Park in Tanzania, 67.4% of respondents owned livestock and 27.4% of all the households surveyed reported losses of a total of 4.5% of their livestock to wild predators over 12 months. This loss equated to an average annual financial loss of 19.2% (US $26.8) of their cash income. Livestock depredation was reported to be caused most often by spotted hyena (Crocuta crocuta) (97.7%), leopard (Panthera pardus) (1.6%), baboon (Papio cynocephalus) (0.4%), lion (Panthera leo) (0.1%) and lastly black-backed jackal (Canis mesomelas) (0.1%). Total reported losses during 2003 amounted to US $12,846 of which spotted hyena kills were reported to account for 98.2%. The mean annual livestock loss per household (of those that reported loss) was 5.3 head of stock, which represents more than two-thirds of the local average annual cash income. Depredation by large felids occurred only in a narrow zone along the protected area (<3 km), whereas spotted hyenas killed livestock even in households located far away (>30 km). Tolerance of livestock depredation among the respondents was low. Logistic regression models indicated that education improved tolerance, while for livestock owners higher depredation rates was linked to approval of lethal retaliation and effective protection measures was associated with a reduced desire of retaliation. We recommend that further research should identify the precise causes of livestock loss and which protection measures that can reduce depredation.     

Buffelgrass (Pennisetum ciliare) land conversion and productivity in the plains of Sonora, Mexico

Bufflelgrass (Pennisetum ciliare syn. Cenchrus ciliaris) is an African grass that has been widely introduced in subtropical arid regions of the world to improve rangelands for cattle production. However, it can have a negative effect on the diversity of native plant communities. Buffelgrass was introduced to Sonora, Mexico in the 1970s as a means to bolster the cattle industry. “Desmonte,” the process by which native desert vegetation is removed in preparation for buffelgrass seeding, alters the land surface such that buffelgrass plots are easily detectable from aerial and Landsat satellite images. We estimated the extent of conversion to buffelgrass in a 1,850,000 ha area centered on Hermosillo, from MSS and TM images from 1973, 1983, 1990 and 2000. We then compared the relative above-ground productivity of buffelgrass to native vegetation using Normalized Difference Vegetation Index values (NDVI) from Landsat and Moderate Resolution Imaging Spectrometer (MODIS) satellite sensor systems. Buffelgrass pastures have increased from just 7700 ha in 1973 to over 140,000 ha in 2000. Buffelgrass pastures now cover 8% of the land surface in the study area. Buffelgrass pastures have lower net primary productivity, estimated by MODIS NDVI values, than unconverted desert land. The desmonte process removes trees and shrubs, while the buffelgrass plantings are often sparse, leading to an apparent net loss in net primary production from land conversion. We recommend that the desmonte process be discontinued until its efficacy and safety for native ecosystems can be established, and that a comprehensive plan for preserving biodiversity while accomodating economic development be established for this region of the Sonoran Desert in Mexico.     

Human-wildlife conflict in the Kingdom of Bhutan: Patterns of livestock predation by large mammalian carnivores

We examined predation activity throughout Bhutan by tiger (Panthera tigris), common leopard (Panthera pardus), snow leopard (Uncia uncia) and Himalayan black bear (Ursus thibetanus) on a variety of livestock types using data gathered over the first two years (2003-2005) of a compensation scheme for livestock losses. One thousand three hundred and seventy five kills were documented, with leopards killing significantly more livestock (70% of all kills), than tigers (19%), bears (8%) and snow leopards (2%). About 50% of livestock killing were of cattle, and about 33% were of horses, with tigers, leopards and snow leopards killing a significantly greater proportion of horses than predicted from availability. Examination of cattle kills showed that leopards killed a significantly greater proportion of smaller prey (e.g., calves), whereas tigers killed a significantly greater proportion of larger prey (e.g., bulls). Overall, livestock predation was greatest in summer and autumn which corresponded with a peak in cropping agriculture; livestock are turned out to pasture and forest during the cropping season, and subsequently, are less well guarded than at other times. Across Bhutan, high horse density and low cattle and yak density were associated with high rates of livestock attack, but no relationship was found with forest cover or human population density. Several northern districts were identified as ‘predation hotspots’, where proportions of livestock lost to predation were considerable, and the ratio of reported kills to relative abundance of livestock was high. Implications of our findings for mitigating livestock losses and for conserving large carnivores in Bhutan are discussed.     

Response of travelling bottlenose dolphins (Tursiops aduncus) to experimental approaches by a powerboat in Jervis Bay, New South Wales, Australia

Powerboats are potentially a significant source of disturbance to coastal cetaceans. Information is scarce, however, on the nature of interactions between powerboats and dolphins, particularly when both surface and acoustic behaviour are combined. The surface behaviour and acoustic response of travelling dolphins to approaches by a powerboat were assessed by a series of experimental trials between November 2001 and November 2003 in Jervis Bay, New South Wales, Australia. Dolphin behaviour was monitored continuously from an independent research boat before, during and after a powerboat approached (n = 12). Treatments were interspersed with control observations (n = 12). Changes in surface behaviour indicated differences between the treatment and control periods (z = 2.24, p = 0.025), with dolphins tending to alter their surface behaviour when exposed to the powerboat approach. Analysis also revealed a change in the direction of travel by dolphin groups when approached (z = 3.22, p = 0.001). Changes in surface behaviour occurred at vessel approach distances outside the minimum approach distance of 30 m for recreational and commercial vessels, as proposed by the New South Wales National Parks and Wildlife Service. In contrast, there were no changes in dolphin whistle rates (F_3,12 = 0.74, p = 0.54) or the duration of echolocation click bouts (F_3,12 = 0.76, p = 0.59) when approached. These findings indicate that powerboats do affect the surface behaviour and direction of travelling inshore bottlenose dolphins in Jervis Bay; however it appears that this impact is not reflected in their acoustic behaviour.     

Parthenogenesis, polyploidy and reproductive seasonality in the Taiwanese mountain earthworm Amynthas catenus (Oligochaeta, Megascolecidae)

Amynthas catenusTsai et al., 2001 is a terrestrial earthworm belonging to the Pheretima complex of the family Megascolecidae. It is endemic to Mt. Hohuan of central Taiwan at elevations of 2985-3004 m. Its reproductive organs showed various stages of degeneration in the present study. The spermathecae varied from being absent (athecal) to three pairs in VI-VIII (sexthecal), and the prostate glands from a large, symmetrical pair to complete absence. For the 44 specimens examined from May 2008 to May 2010, there were 47.7% athecals, 36.4% sexthecals and 15.9% intermediates. Results of a flow cytometric analysis showed that there were three DNA ploidy levels - diploid, triploid and tetraploid (2n, 3n, and 4n) - for the athecals but only diploid for the sexthecals. The intermediates consisted of diploids and triploids. The diploids had 2n = 112 and the triploids 3n = 168. The haploid chromosome number of A. catenus was 56. Spermatogenesis occurred throughout the year with the highest activity in summer for both athecals and sexthecals, but the number of mature ova peaked in summer for the athecals and in spring for the sexthecals. There was no significant difference in mean number of mature ova produced between the athecals and the sexthecals, but the sexthecals had significantly higher spermatogenetic activity than the athecals. For all specimens examined, sperm were present in testes and seminal vesicles but not in spermathecae, an indication of parthenogenesis in the species.     

Survival of Marbled Teal (Marmaronetta angustirostris) released back into the wild

Reintroduction or re-enforcement programmes are major tools in species conservation, but there is a need for more studies that assess the influence of different husbandry and release methods on the survival of released animals. We investigated the survival of globally threatened Marbled Teal (Marmaronetta angustirostris) taken into captivity as ducklings when they became trapped in an irrigation channel, then released again after fledging. We used wing tags and mark-recapture models to estimate the survival of released teal. Ducklings rescued in 1996 (n = 53) were released soon after fledging in September and their survival was modelled for seven months until April 1997. Their apparent monthly survival rate (lower than true survival owing to loss of wing tags) was 0.85 ± 0.12 (±s.e.). Ducklings rescued in 1997 (n = 44) were released together in February 1998 over five months after fledging, and their survival was modelled for six months from February until August. Their apparent monthly survival rate was 0.54 ± 0.06. Ducklings rescued in 1998 (n = 159) were released in August-September soon after fledging and their survival was modelled for 10 months from August until June. Their apparent monthly survival rate was 0.83 ± 0.07. Monthly survival was significantly higher for the 1996 and 1998 cohort, suggesting that retaining birds in captivity after fledging had a negative impact on post-release survival. When birds were released in February, a lower proportion survived until the breeding season three months later than when they were released five months earlier in September.     

The impacts of Phalaris arundinacea (reed canarygrass) invasion on wetland plant richness in the Oregon Coast Range, USA depend on beavers

Invasive plants can threaten diversity and ecosystem function. We examined the relationship between the invasive Phalaris arundinacea (reed canarygrass) and species richness in beaver wetlands in Oregon, USA. Four basins (drainages) were chosen and three sites each of beaver impoundments, unimpounded areas and areas upstream of debris jams were randomly chosen in each basin for further study (n = 36). Analysis of covariance (ANCOVA) showed that the relationship between Phalaris and species richness differed significantly (p = 0.01) by site type. Dam sites (beaver impoundments) exhibited a strong inverse relationship between Phalaris and species richness (b_D = −0.15), with one species lost for each 7% increase in Phalaris cover. In contrast, there was essentially no relationship between Phalaris cover and species richness in jam sites (debris jam impoundments formed by flooding; b_J = +0.01) and unimpounded sites (b_U = −0.03). The cycle of beaver impoundment and abandonment both disrupts the native community and provides an ideal environment for Phalaris, which once established tends to exclude development of herbaceous communities and limits species richness. Because beaver wetlands are a dominant wetland type in the Coast Range, Phalaris invasion presents a real threat to landscape heterogeneity and ecosystem function in the region.     

Jaguars, pumas, their prey base, and cattle ranching: ecological interpretations of a management problem

Jaguar and puma depredation on livestock may be influenced by (1) innate and learned behavior; (2) health and status of individual cats; (3) division of space and resources among jaguar and puma; (4) cattle husbandry practices; and (5) abundance and distribution of natural prey. Our study in Los Llanos of Venezuela aimed to establish how all these elements related to cattle being lost to cat depredation. Prey distribution was influenced by forest composition, topographical characteristics, and degree of habitat interspersion. The biomass of natural prey in the study area was adequate to support the resident large cats without a subsidy of livestock. Selective rather than opportunistic hunting by the cats reinforced that conclusion. Puma were responsible for more attacks on livestock than jaguar, frequently in maternity pastures in upland areas of relatively low prey availability. Management recommendations are discussed that may be relevant to other savanna/forest mosaics of South America.     

The regional distribution of large gliding possums in southern Queensland, Australia. I. The yellow-bellied glider (Petaurus australis)

Generalised linear modelling (logistic regression) was used to predict habitat suitability for the yellow-bellied glider (Petaurus australis) from data collected from 620 sites throughout southern Queensland, Australia. Of 42 potential explanatory biotic and abiotic variables, 12 were selected in the final model including an index describing bark characteristics of the overstorey, five climatic variables, three topographic/lithological variables, two landscape metrics and one survey covariate. The predictive capacity of the final model was evaluated using Receiver Operating Characteristic curves and an independent validation dataset (ROC = 0.75; n = 180). Of the extant forest and woodlands of the southern Queensland study region, the interpolated model predicted that approximately 19% was yellow-bellied glider habitat. The majority of predicted habitat occurred within public-owned forests, which are managed under a set of prescribed standards in a Code of Practice for commercial forest management. An important issue for conservation management of the yellow-bellied glider will be management of habitat on privately owned land, which incorporates over 27% of potential glider habitat.     

Conservation value of tropical secondary forest: A herpetofaunal perspective

In some areas of the tropics forests are recovering on abandoned cattle pastures. These secondary forests may be important habitats for conserving biodiversity, but we know little about their species composition over the long term. We studied herpetofaunal community changes in a 40 years chronosequence of forest succession on abandoned pastures in Puerto Rico. Twelve submontane sites (100-250 masl) represented four forest recovery stages: pasture, young (1-5 years after abandonment), intermediate (10-20 years), and advanced (40 years). Among these stages we analyzed the relationship of forest structure, microclimate, and herpetofaunal community structure. During succession total forest height increased, new strata of vegetation appeared in the understory, and the forest gained heterogeneity and complexity. Microclimate changed with changes in the physiognomy and structure of the vegetation. Microclimatic shifts were more dramatic in forest <20 years since abandonment. During 1 year we observed 7991 individuals of thirteen reptilian species (60% of observations) and six anuran species. Herpetofaunal richness was similar among stages, but the total abundance increased through succession. Relative abundance of anurans and reptiles was similar between stages, but species dominance changed with succession. Forest >20 years old resembles mature forest in some structural characteristics important to herpetofauna and can provide habitat for forest herpetofauna in disturbed areas.     

Effects of forest fragmentation on two sister genera of Amazonian rodents (Myoprocta acouchy and Dasyprocta leporina)

Because agoutis (Dasyprocta sp.) and acouchies (Myoprocta sp.) are the most important dispersers of several large-seeded Amazonian trees, knowing their responses to forest fragmentation is essential and urgent. But until now, there was no study showing their population trends in Amazonian land forest fragments. The present study was conducted at the Biological Dynamics of Forest Fragments Project, Central Amazon, Brazil. Eleven sites (three fragments of 1 ha, three of 10 ha, two of 100 ha and three sites of continuous forest) were surveyed between 2003 and 2005. Agoutis and acouchies were systematically counted at each site through standard transect censuses and their densities were estimated with DISTANCE 4.1. Overall, I walked 100 km, and encountered 136 acouchies and 35 agoutis. Fragmentation had a significant negative effect on acouchies and a significant positive effect on agouti densities. Acouchy density was 0.64 ± 0.09 inds./ha in continuous forests and 0.07 ± 0.07 inds./ha in 1-ha fragments. On the other hand, agouti density was 0.16 ± 0.05 inds./ha in continuous forests and 0.71 ± 0.24 inds./ha in 1-ha fragments. This study is consistent with the idea that in fragments, larger species of mammals are initially less affected by forest fragmentation than smaller ones. More critical to conservation is the fact that acouchies, which were negatively affected by fragmentation, are restricted to the core region of the Amazonian rainforests. Continued fragmentation of Amazonian forests should have vast negative consequences for the genus.     

Degradation of tropical forest in Hainan, China, 1991-2008: Conservation implications for Hainan Gibbon (Nomascus hainanus)

The Hainan gibbon (Nomascus hainanus) is one of the most endangered primates in the world, confined to mature natural forest in Hainan Island, China. We assessed changes in habitat condition on the island between 1991 and 2008, using vegetation maps generated by remote-sensing images. We defined forest suitable for gibbons based on composition, tree size and canopy cover. During the 17-year period, the area of suitable gibbon forest decreased by 540 km² (35%) across the whole island, and by 6.3 km² (7%) in the locality of the sole remaining gibbon population at Bawangling National Nature Reserve. The forest patches large enough (>1 km²) to support a gibbon group decreased from 754 km² to 316 km² in total area, and from 92 to 64 in number. Suitable natural forest was mainly replaced by plantations below 760 m, or degraded by logging, grazing and planting of pines above 760 m. Meanwhile, forests in former confirmed gibbon areas became more fragmented: mean area of patches decreased by 53%. We mapped the patches of natural forest in good condition which could potentially support gibbons. We recommend a freeze on further expansion of plantations between core patches at Bawangling, Jiaxi-Houmiling and Yinggeling Nature Reserves in accordance with forest protection regulations; establishment of nature reserves in currently unprotected natural forest patches elsewhere in line with the local government’s nature reserve expansion policy; and active natural-forest restoration between remaining fragments at Bawangling.     

Distribution of monoterpenes between organic resources in upper soil horizons under monocultures of Picea abies, Picea sitchensis and Pinus sylvestris

The aim of this study was to compare the monoterpene content and distribution in litters and roots of three conifer species: Picea abies (L.) Karst, Picea sitchensis (Bong.) Carr. and Pinus sylvestris (L.). We analysed the monoterpene content of green needles, needle litter, F (fermentation) layer material and roots collected from monoculture plots. The rate of loss of monoterpenes from freshly fallen litter in the field was also studied at two monthly intervals over 10 months, to assess the length of time that monoterpenes entering the litter layer remain. Monoterpene analysis was carried out by extracting homogenised samples in hexane and identifying and quantifying the resulting monoterpenes using gas chromatography with flame ionisation detection (GC-FID) and gas chromatography-mass spectrometry (GC-MS). Mean total monoterpene concentrations varied significantly between the three species examined (e.g. in freshly fallen litter 1531 ± 96, 100 ± 5 and 1175 ± 122 μg g⁻¹ d. wt for P. abies, P. sitchensis and P. sylvestris); each species had distinctive and consistent monoterpene profiles associated with each type of tissue, and total monoterpene concentrations in green needles varied between individual trees of the same species, particularly for P. sitchensis. A substantial proportion of the monoterpene content of green needles remained in the needles after litter fall for P. abies (42%), P. sitchensis (11%) and P. sylvestris (30%). Although rates of monoterpene loss from needle litters varied initially (P. sylvestris > P. abies > P. sitchensis), the majority of the monoterpene content was lost after 4-6 months. Maximum monoterpene emission rates from decaying litter were calculated of 39 (P. abies), 1.7 (P. sitchensis) and 39 μg m⁻² h⁻¹ (P. sylvestris). Monoterpene concentrations in F layer material were very low (<10 μg g⁻¹ d. wt). Roots, particularly in P. sylvestris, represented a significant pool of monoterpenes (185 ± 16, P. abies; 258 ± 54, P. sitchensis; 2133 ± 200 μg g⁻¹ d. wt, P. sylvestris). The monoterpene profile was similar between roots and litter of P. sylvestris (α-pinene most abundant), and for P. sitchensis, (limonene and α-pinene most abundant), although a different pattern was observed between needle litter (most abundant β-pinene) and roots (most abundant myrcene) of P. abies. The relatively high concentrations and different profiles of monoterpenes characterised in upper organic soil horizons here emphasise the need for their influence on soil ecological processes to be assessed.     

Field characterization of olive (Olea europaea L.) tree crown architecture using terrestrial laser scanning data

Since the introduction of Terrestrial Laser Scanning (TLS) instruments, there now exists a means of rapidly digitizing intricate structural details of vegetation canopies using Light Detection and Ranging (LiDAR) technology. In this investigation, Intelligent Laser Ranging and Imaging System (ILRIS-3D) data was acquired of individual tree crowns at olive (Olea europaea L.) plantations in Córdoba, Spain. In addition to conventional tripod-mounted ILRIS-3D scans, the unit was mounted on a platform (12 m above ground) to provide nadir (top-down) observations of the olive crowns. 24 structurally variable olive trees were selected for in-depth analysis. From the observed 3D laser pulse returns, quantitative retrievals of tree crown structure and foliage assemblage were obtained. Robust methodologies were developed to characterize diagnostic architectural parameters, such as tree height (r² = 0.97, rmse = 0.21 m), crown width (r² = 0.97, rmse = 0.13 m), crown height (r² = 0.86, rmse = 0.14 m), crown volume (r² = 0.99, rmse = 2.6 m³), and Plant Area Index (PAI) (r² = 0.76, rmse = 0.26 m²/m²). With the development of such LiDAR-based methodologies to describe vegetation architecture, the forestry, agriculture, and remote sensing communities are now faced with the possibility of replacing current labour-intensive inventory practices with, modern TLS systems. This research demonstrates that TLS systems can potentially be the new observational tool and benchmark for precise characterization of vegetation architecture for improved agricultural monitoring and management.     

Livestock predation by endangered African wild dogs (Lycaon pictus) in northern Kenya

Most large mammalian carnivores are in global decline, principally due to conflict with livestock farmers. Because endangered African wild dogs (Lycaon pictus) range widely, often beyond the boundaries of protected areas, they may be particularly exposed to lethal control by farmers, even where nominally protected by reserves. Hence, effectively conserving wild dogs demands resolution of their conflicts with farmers. We investigated livestock depredation by African wild dogs living outside protected areas in northern Kenya. Scat analysis confirmed the distribution of depredation events reported by local farmers, indicating that farmer reports - collated by local Community Liaison Officers - gave a reasonably good index of the true pattern of depredation. Although livestock were abundant throughout the study area, depredation was exceedingly uncommon (approximately one attack per 1000 km² per year) and the costs of tolerating wild dogs were very low (US $3.40/wilddog/year) where wild prey remained, even at low densities. However, where wild prey were seriously depleted, wild dogs killed livestock repeatedly, and the cost of sustaining them rose to US $389/wilddog/year. Hence, although wild dogs had a negligible economic impact in the region, their impact was locally severe. Conservation activities for wild dogs are most likely to be successful if targeted at areas where wild prey remain, and where traditional herding practices have been retained.     

Life on the edge - High levels of genetic diversity in a cliff population of Bertya ingramii are attributed to B. rosmarinifolia (Euphorbiaceae)

Wind-facilitated migration of new genotypes into small, geographically disjunct populations should buffer them against local extinction. Bertya ingramii, a monoecious, wind-pollinated shrub, is restricted to three populations in a 4 km² area in eastern Australia. Populations are separated by deeply dissected gorges where it is unlikely that seeds are exchanged but where wind movement may facilitate pollen dispersal. Using 156 highly polymorphic ISSR markers, we found moderate genetic variation within and among populations of B. ingramii and less genetic diversity in a nearby and small population of the widespread Bertya rosmarinifolia. The smallest population of B. ingramii (<30 plants) had the highest genetic variation (65% polymorphic markers, Shannon Information Index = 0.30). AMOVA and a Bayesian analysis showed that molecular variance was equally distributed within and among populations suggesting that gene flow is as limited within as in among populations. Genetic distances between populations were only weakly explained by their relative geographic distances (mantel test, R² = 0.21, P = 0.001) but the distribution of private bands, the departure from Hardy-Weinberg equilibrium, and a UPGMA tree showed that the smallest population of B. ingramii was generally more similar to an upstream population of B. rosmarinifolia. Thirty-eight percent of bands in this small population of B. ingramii were exclusively shared with B. rosmarinifolia. This covert hybridisation may have been an ancient event but may be responsible for contemporary declines in germination and establishment in B. ingramii. The conservation implications are amplified by the endangered status of B. ingramii.     

Genetic structure, population dynamics, and conservation of Black caiman (Melanosuchus niger)

Microsatellite DNA polymorphisms were screened in seven populations of the largest Neotropical predator, the Black caiman Melanosuchus niger (n = 169), originating from Brazil, French Guiana and Ecuador. Eight loci were used, for a total of 62 alleles. The Ecuadorian population had the lowest number of alleles, heterozygosity and gene diversity; populations of the Guianas region exhibited intermediate diversities; highest values were recorded in the two populations of the Amazon and Rio Negro. During the last century Melanosuchus populations have been reduced to 1-10% of their initial levels because of hunting pressure, but no strong loss of genetic diversity was observed. Both the inter-locus g-test and the Pk distribution suggested no recent important recovery and/or expansion of current populations. On a global scale, the inter-population variation of alleles indicated strong differentiation (F_ST = 0.137).Populations were significantly isolated from each other, with rather limited gene flow; however, these gene flow levels are sufficiently high for recolonization processes to effectively act at regional scales. In French Guiana, genetic structuring is observed between populations of two geographically close but ecologically distinct habitats, an estuary and a swamp. Similar divergence is observed in Brazil between geographically proximate “black water” and “white water” populations. As a consequence, the conservation strategy of the Black caiman should include adequate ecosystem management, with strong attention to preservation of habitat integrity. Distribution of genetic diversity suggests that current populations originated from the central Amazonian region. Dispersal of the species may thus have been deeply influenced by major climatic changes during the Holocene/Pleistocene period, when the Amazonian hydrographic networks were altered. Major ecological changes such as glaciations, marine transgressions and a hypothesized presence of an Amazonian Lake could have resulted in extension of Black caiman habitats followed by isolation.     

Congenital bone deformities and the inbred wolves (Canis lupus) of Isle Royale

The wolf (Canis lupus) population on Isle Royale, a remote island in Lake Superior, North America, is extremely inbred. Nevertheless, the consequences of genetic deterioration have not been detected for this intensively studied population, until now. We found that 58% (n = 36) of Isle Royale wolves exhibited some kind of congenital malformation in the lumbosacral region of the vertebral column and 33% exhibited a specific malformity, lumbosacral transitional vertebrae. By contrast, only 1% (1 of 99) of wolves sampled from two outbred, wolf populations exhibited this malformity. Moreover, in domestic dogs (Canis lupus familiaris) lumbosacral transitional vertebrae are associated with cauda equina syndrome, which can cause paresis, paralysis, locomotor difficulties in the rear legs and tail, and back pain. Whereas many studies illustrate how genetic deterioration affects population-level phenomena, such as survival and reproduction, these results are distinctive for demonstrating how genetic deterioration has compromised the morphology of individuals in a free-ranging population. The results are also significant because many policy makers and stakeholders and some conservation professionals use examples like Isle Royale wolves to downplay the consequences of genetic deterioration.     

Hot-water extractable carbon in soils: a sensitive measurement for determining impacts of fertilisation, grazing and cultivation

Using pre-established trial sites on allophanic soils, we investigated the impacts of long to medium-term pastoral management practices, such as fertilisation and grazing intensity, on a range of soil biological and biochemical properties; hot water-extractable C (HWC), water-soluble C (WSC), hot-water extractable total carbohydrates, microbial biomass-C and N and mineralisable N. These properties were examined for their usefulness as soil quality indicators responding to changes in the rhizosphere caused by management practices. Adjacent cropping, market garden and native bush sites located on similar soil types were included to determine the changes in soil biological and biochemical properties resulting from changes in land use. The seasonal variability of HWC and its relationship with other labile fractions of soil organic matter was also examined.Microbial biomass-C, mineralisable N and extractable total carbohydrates showed promise in differentiating treatment and land use effects. However, HWC was one of the most sensitive and consistent indicators examined at 52 different sites. The impact of different land uses on the amounts of HWC in the same soil type was far greater than that was observed for the soil organic carbon. The average values of HWC for soil under different land use were: native (4000 μg C g⁻¹ soil), sheep/beef pastures (3400), dairy pastures (3000), cropping (1000) and market gardening soils (850). HWC was also sensitive to differences within an ecosystem, e.g. effects of grazing intensities and effects of N or P fertilisers on pastures. The sheep and beef/cattle grazed pastures always had higher amounts of HWC than the intensively grazed dairy pastures. Nitrogen fertiliser application (200 and 400 kg N ha⁻¹ yr⁻¹) over the previous 5 yr had significant (P<0.001) negative impacts on HWC and other soil microbial properties. In contrast, long-term application of P fertilisers had a significant (P<0.001) positive effect on the HWC levels in pastoral soils. In the case of long-term P trials, HWC increased even though no increase in the total soil carbon pool was detected.HWC was positively correlated with soil microbial biomass-C (R²=0.84), microbial nitrogen (R²=0.72), mineralisable N (R²=0.86), and total carbohydrates (R²=0.88). All these correlations were significant at P<0.001 level of significance. The HWC was also positively correlated with WSC and total organic C. However, these correlations were poorer than those found for other soil parameters. Most of these measurements have been actively promoted as key indicators of soil quality. Given the strong correlations between HWC and other biochemical measurements, HWC could be used as an integrated measure of soil quality. When HWC is extracted, other pools of labile nutrients are also extracted along with C. Therefore it is suggested that decline in HWC would also indicate a decline in other labile organic pools of nutrients such as nitrogen, sulphur and phosphorus. About 40-50% of the C in the HWC extract was present as carbohydrates.     

Unexpected high levels of genetic variability and the population structure of an island endemic rodent (Oryzomys couesi cozumelae)

Oryzomys couesi cozumelae is an endemic, threatened rodent from Cozumel Island, Mexico. We estimated its genetic diversity and structure by analyzing microsatellite loci in 228 samples from 12 sampling sites widely distributed throughout the island. Unexpected high levels of genetic and allelic diversity were found: a total of 54 alleles, an average of 10.8 alleles per locus, and high heterozygosity values (mean H_O = 0.624, H_E = 0.690 and H_Nei = 0.689). These values are higher than those reported for small sized insular mammals, higher than that found in 37 individuals of the mainland O. couesi from southern Mexico (H_O = 0.578) that we analyzed for comparative purposes, and similar to those of other mainland small mammal populations. Despite factors that affect Cozumel’s biota, such as exotic predators and competitors, hurricanes, seasonal population fluctuations and anthropogenic activities, no evidence of genetic bottlenecks was found. A significant population structure was observed and a model of isolation-by-distance was supported. Our findings render O. c. cozumelae a high conservation value, not only for its high genetic diversity and structure, but because available data suggests that its population has declined significantly in recent years. Further habitat fragmentation and population isolation could result in a higher genetic structure and loss of genetic diversity. The protection of habitat, the maintenance of habitat connectivity and the removal of introduced competitors and predators are a conservation priority. Acknowledging that the genetic structure of populations has crucial conservation implications, the present genetic information should be taken into account in management plans for the conservation of O. c. cozumelae.