Direct and indirect effects of riparian canopy on juvenile Atlantic salmon,Salmo salar,and brown trout,Salmo trutta,in south‐west Ireland

Abstract Dense riparian tree canopy is generally found to have a negative effect on salmonid populations. Canopy can affect fish both directly via trophic impacts and its effects as cover, and indirectly via its effects on the distribution of instream vegetation. This study examined the impact of riparian canopy on the ecology of juvenile Atlantic salmon, Salmo salar L., and brown trout, Salmo trutta L., in south‐west Ireland. Riparian canopy reduced the density, length and gut contents of juvenile salmon, but not brown trout. The negative relationship between canopy cover and fish size and feeding was strongly influenced by the abundance of instream macrophytes, which in turn varied as a function of catchment water chemistry. As a management strategy, the reduction of dense riparian canopy is unlikely to have the same effect on juvenile salmonids on all streams within an ecoregion because of differences in catchment‐wide factors.     

Seasonal variation in habitat use by salmon, Salmo salar, trout, Salmo trutta and grayling, Thymallus thymallus, in a chalk stream

Abstract A portable multi‐point decoder system deployed in a tributary of the River Itchen, a southern English chalk stream, recorded the habitats used by PIT‐tagged juvenile salmon, Salmo salar L., trout, Salmo trutta L. and grayling, Thymallus thymallus L., with a high degree of spatial and temporal resolution. The fishes’ use of habitat was monitored at 350 locations throughout the stream during September/October 2001 (feeding period) and January/February 2002 (over‐wintering period). Salmon parr tended to occupy water 25–55 cm deep with a velocity between 0.4 and 1.0 m s^?1. During both autumn and winter, first year salmon (0+ group) were associated with gravel substrate during the daytime and aquatic weed at night. In autumn, 1+ salmon were strongly associated with hard mud substrates during the day and with marginal tree roots at night. In winter, they were located on gravel substrate by day and gravel and mud at night. Trout were associated with a greater range of habitats than salmon, generally occupying deeper and faster water with increasing age. During the autumn, 0+ trout were located along shallow (5–10 cm) and slow (?0.1–0.4 m s^?1) margins of the stream, amongst tree roots by day and on silty substrates at night. During winter the 0+ trout occupied silty substrates at all times. As age increased, trout increasingly used coarse substrates; hard mud, gravel and chalk, and weed at night. All age groups of grayling (0+, 1+ and 2+) tended to occupy hard gravel substrate at all times and used deeper and faster water with increasing age. The 1+ and 2+ groups were generally found in water 40–70 cm deep with a velocity between 0.3 and 0.5 ms^?1, whilst the 0+ groups showed a preference for shallower water with reduced velocity at night, particularly in the winter. There were greater differences in the habitats used between species and age groups than between the autumn and winter periods, and the distribution of fish was more strongly influenced by substrate type than water depth or velocity. The results are discussed in relation to the habitat requirements of mixed salmonid populations and habitat management.     

Initial observations on the effects of varying levels of deciduous bankside vegetation on salmonid stocks in Irish waters

Abstract. The effects of varying levels of deciduous bankside vegetation on salmonid stocks in Irish rivers were investigated. In summertime, when marginal vegetation limited the extent of incident light reaching the river bed, a marked decline in both juvenile salmon, Salmo salar L., and juvenile and adult trout, Salmo trutta L., numbers were observed relative to stocks in adjacent areas with a less dense canopy. This appears to be a countrywide phenomenon in all available salmonid habitats. In the case of both juvenile salmon and all trout numbers a correlation is evident between the extent of shade, as measured in terms of the reduction in aquatic vegetation, and fish numbers, which fall as shade levels increase. Data also suggest that the length of tunnelled channel, upstream of tunnelled sites electrofished, seems to influence the standing crop of juvenile salmon with numbers of these fish falling with increasing tunnel length. This relationship is not evident in relation to trout numbers.     

Brown trout, Salmo trutta L.: a new species for intensive marine aquaculture

Abstract. Strains of two salmonid species, brown trout, Salmo trutta L., and Atlantic salmon, Salmo salar L., were compared for the purpose of marine aquaculture. Survival rate, growth and sexual maturation rate were investigated. Brown trout performances were good and allowed for intensive production.     

Density of juvenile brown trout and Atlantic salmon in natural and man-made riverine habitats

The density of juvenile brown trout (Sulmo trutta L.) and Atlantic salmon (Salmo salar L.) was significantly higher along river bank areas protected against erosion than along natural river banks in the River Gaula, Central Norway. A habitat shift appeared in Atlantic salmon, and a behavioural shift was demonstrated by brown trout from August October. The effect of habitat on densities of juvenile salmonids should be taken into account as mitigation measures on eroded river banks and when assessing fish production in rivers.     

Assessment of a semi-quantitative electric fishing sampling technique for juvenile Atlantic salmon, Salmo salar L., and trout, Salmo trutta L., in small streams

Abstract. A semi-quantitative technique of assessing trout, Salmo trutta L., and juvenile Atlantic salmon, Salmo salar L., stocks in small rivers is described and evaluated against a commonly used quantitative method. The results indicate that for 0+ and >0+ juvenile salmon and trout a log₁₀ n+1 transformed linear regression accounted for between 68.6% and 90.2% of the total variance in the relationship between the semi-quantitative and the quantitative result. The use of a categorization system is recommended and the applicability of the technique to an extensive juvenile salmonid monitoring programme is described.     

Linking habitat characteristics with juvenile density to quantify Salmo salar and Salmo trutta smolt production in the river Sävarån,Sweden

Abstract Habitat mapping along 85 km of river was related to juvenile (15 years of electric fishing) and smolt (3 years of screw‐trapping) abundance data to estimate salmon, Salmo salar L., and sea trout, Salmo trutta L., smolt production in the River Sävarån, northern Sweden. Spawning site selection by radio‐tagged salmon (n = 12) and sea trout (n = 4) was also assessed. Fifty‐one hectares of potential spawning and nursery habitat was found in the main stem river, representing 25% of the total river area. These areas were estimated to yield 1300–7580 salmon and 630–3540 sea trout smolts based on juvenile densities, equating with 3 years of screw‐trap data (2990–5080 salmon and 680–2520 trout smolts, respectively). A hypothetical maximum production of about 19 900 salmon smolts was predicted for the river at a density of 40, 0+ salmon 100 m^?2. Tracking adults during the spawning period identified optimal and potential reproductive areas.     

Lake-use by juvenile Atlantic salmon (Salmo salar L.) and other salmonids in northern Norway

Abstract– The utilization of lakes, and inlet and outlet streams by juvenile Atlantic salmon ( Salmo salar L.), brown trout ( Salmo trutta L.) and Arctic charr ( Salvelinus alpinus (L.), were investigated in 16 watercourses northern Norway, all known to inhabit salmon stocks. In lakes, fish were caught by small mesh size gill nets, while in rivers fish were caught electrofishing. In the shallow littoral (0-3 m depth) there were juvenile salmon in 15 of 19 investigated lakes, juvenile trout in 17 and juvenile charr in seven. Trout dominated significantly in numbers in the shallow littoral of seven lakes, while salmon and charr dominated in three lakes each. When trout and salmon were frequent in the shallow littoral, charr was usually not present in this habitat, but were found in the profundal zone in most of the lakes. Atlantic salmon parr utilized both shallow and deep lakes, and used both stones and macrophytic vegetation as shelter. The utilization of lakes by salmon parr seemed to be closely related to utilization of small inlet streams for spawning. In most inlet and outlet streams salmon dominated over trout in numbers, while charr were absent. This is the first documentation of lake-use by naturally occurring salmon parr in Scandinavia.     

A systemic protozoal disease of cultured salmonids

Abstract. Sporadic cases of a systemic protozoal infection with cells resembling Dermocystidium sp. are described from cultured rainbow trout, Salmo gairdneri Richardson, from France and brown trout, Salmo trutta L., and Atlantic salmon, Salmo salar L., from Ireland. Classical proliferative kidney disease was additionally found in the rainbow trout and PKX-like cells were also seen in the brown trout and salmon.     

The effects of fluvial processes and habitat heterogeneity on distribution, growth and densities of juvenile Atlantic salmon (Salmo salar L.), with consequences on abundance of the adult fish

Abstract – The required freshwater habitats of juvenile Atlantic salmon ( Salmo salar ) are, in general, well known, but vary in quality, related to interacting effects of several variables, which may depend on different parts of a river system. Examples are given of ranges of densities and growth that can be found at various sites in eastern Canada, illustrating the biological and physico-chemical factors affecting production of juvenile salmon. Relative growth rates can indicate habitat quality and population densities. Salmon parr have negative effects on brook trout in riffle habitats. The effects of migrations within the river and of changes with stream succession on juvenile salmon production are illustrated with examples from a Newfoundland river. Migration of age-classes can be quantified from 'self-thinning' curves. Lakes have enhancing effects on downstream fluvial habitats, and, at least in Newfoundland, and probably in many boreal areas, the lacustrine proportion of the basin can be used as an index for deriving estimates of required spawning escapement. The factors described should be taken into account for more refined estimates of river production and management of the salmon resource.     

Road culvert restoration expands the habitat connectivity and production area of juvenile Atlantic salmon in a large subarctic river system

The effects of restoration of impassable road culverts on the distribution of juvenile Atlantic salmon, Salmo salar L., were evaluated in seven small tributaries of the subarctic River Teno system, northernmost Finland/Norway. Restoration enabled the passage of juvenile salmon through the culverts and increased the distribution area of salmon parr in the seven streams by tens or hundreds of metres, depending on the natural slope of the tributary with a total of ≈1 km new area for ascending juveniles. Areas upstream of the culverts were colonised after varying number of years, mostly 2–3, following restoration. Age‐1 and age‐2 parr were the first salmon age groups entering the new territory after removal of the migration barrier. Although the restoration measures were conducted at the downstream outlet area of the culverts only, the connectivity was improved and increased the production area accessible to juvenile salmon. Such removal of migration barriers and securing habitat connectivity by passable culverts should be taken into account in environmental management strategies of river systems safeguarding the essential habitats of salmonid fish.     

Influence of environmental and biological factors on the overwinter growth rate of Atlantic salmon Salmo salar parr in a UK chalk stream

Smolt lengths are increasingly recognised as an important determinant of salmonid marine survival rates. Overwintering growth rates could thus strongly influence adult return rates. In Atlantic salmon Salmo salar, most overwintering studies focus on rivers in harsh climates with minimal growth, yet in more southerly rivers, overwintering growth rates can be relatively high. Here, the factors influencing annual overwinter growth rates were tested for juvenile S. salar in a temperate chalk stream in southern England over 13 years, where over 10,000 salmon parr were tagged annually in autumn and a proportion recaptured the following spring during smolt emigration. Winters of higher and more variable water temperatures, with longer periods of high flows, showed increased overwintering growth rates. Faster growth rates were recorded from sites further upstream and that had lower parr densities; smaller individuals also grew more than expected for their initial size. These results suggest that a range of factors influences overwintering salmonid growth rates and can be used to inform management decisions to maximise the quality of emigrating smolts.     

Incidence of hybridization between Atlantic salmon, Salmo salar L., and brown trout, Salmo trutta L., in Ireland

The substantial growth of the farmed salmon industry in Europe since the 1970s has highlighted concerns regarding the genetic impact of escaped farmed salmon on wild salmonid stocks. High incidences of salmon × trout hybrids have been recorded in rivers situated near intensive salmon farming in Norway and Scotland, which may be indicative of a breakdown in reproductive isolation between salmon, Salmo salar L., and brown trout, Salmo trutta L. In the present study, salmonid fry and 0+ parr were collected from rivers in western Ireland. Allozyme and minisatellite DNA analysis were carried out on fry to determine the frequency of F1 hybrids from 10 rivers located within 38 km of salmon farms and three rivers at least 80 km from salmon farms. A total of 49 hybrids were recorded from 4135 salmonid fry (frequency = 1.2%). Mitochondrial DNA analysis showed that all hybrids arose from Atlantic salmon female × brown trout male crosses. Hybrid parr were recorded from one of the low-risk rivers (1.0%), but were present in seven out of the 10 catchments located within 38 km of salmon farms, with frequencies ranging from 0.7% to 3.1%. The results of the present survey, which represents the first extensive record of the levels of salmon-trout hybridization in Ireland, are discussed in relation to the continued growth of salmon farming in this country.     

The effect of competition among three salmonids on dominance and growth during the juvenile life stage

Although non‐native species can sometimes threaten the value of ecosystem services, their presence can contribute to the benefits derived from the environment. In the Great Lakes, non‐native brown trout (Salmo trutta) and rainbow trout (Oncorhynchus mykiss) support substantial recreational fisheries. With current efforts underway to restore once‐native Atlantic salmon (Salmo salar) to Lake Ontario, there is some concern that Atlantic salmon will impede non‐native contributions to the recreational fishery because Atlantic salmon exhibit niche overlap with brown trout and rainbow trout, particularly during the juvenile life stage. We therefore examined competition and growth of juvenile Atlantic salmon, brown trout and rainbow trout in semi‐natural streams. We found that brown trout were the most dominant and had the greatest growth rate regardless of what other species were present. Rainbow trout were more dominant than Atlantic salmon and consumed the most food of the three species. However, in the presence of brown trout, rainbow trout fed less frequently and exhibited negative growth as compared to when the rainbow trout were present with only Atlantic salmon. These data suggest that, outside of density‐dependent effects, Atlantic salmon will not impact stream production of brown trout and rainbow trout.     

Rehabilitation of brown trout, Salmo trutta, habitat damaged by riparian grazing in an English chalkstream

Abstract  Rehabilitation trials involving riparian fencing and limited pool excavation were conducted on the River Piddle and Devil's Brook, Dorset, England, which had been degraded by intensive riparian grazing. In one trial, based on two short (94 and 99 m) treated sections and two control sections, brown trout, Salmo trutta L., numbers were monitored from 1994 (pre-treatment) to 2000. In a second trial from 1996 (pre-treatment) until 2000, trout numbers were monitored in 900 m and 1400 m treated sections. After rehabilitation, juvenile trout numbers increased in the two short sections (Trial 1) but fell in one of the long sections. Adult numbers also increased markedly in the two short-treated sections relative to the controls and they increased markedly in one of the long sections despite a reduction in juveniles. Marking of trout in the short sections showed that they selected the rehabilitated habitat in preference to the control habitat and that immigration was the main source of adult trout, as it must also have been in the 1400 m section. While the results indicate that improvements can be made to adult trout habitat, more research is required on the impact on juvenile production before the impact of such work on the true population can be established.     

Comparison of population dynamics of Atlantic salmon (Salmo salar) and brown trout (Salmo trutta) in a small tributary of the River Scorff (Brittany, France)

The population dynamics of Atlantic salmon (Salmo salar L.) and brown trout (Salmo trutta L.) were compared in a small tributary of the River Scorff (Brittany, France) from spawning time to the beginning of the third growing season. The spawning and fry emergence of the two species took place at approximately the same time. In the first autumn, the densityof 0+ juveniles and settling rate from the egg stage were much higher in trout than in salmon. The emigration rate from 0+ population was much higher in trout than in salmon. The size of resident and migrating fish was always smaller in salmon than in trout, whatever the age. The low level of salmon production in the brook, compared with trout, was the result of low survival from egg to 0+ stage in autumn, combined with the small proportion of juveniles migrating after the first growing season. This was not compensated by a high number of migrants the next year. The role of physical habitat, inter-and intraspecific competition, predation and migration dependence on size and early sexual maturity is discussed. Indications are that small tributaries of the type studied are of great value for recruitment in trout but not very productive for juvenile salmon.     

Electron microscopy of an ulcerative dermal necrosis (UDN)-like salmon disease in Finland

Abstract. An ulcerative dermal necrosis-like salmon disease appeared in Laukaa Central Fish Culture Station in Middle-Finland in autumn 1976 showing lesions in different sites on diseased landlocked salmon Salmo salar L., sea trout Salmo trutta trutta L. and brown trout Salmo trutta lacustris L. Lesions from the diseased landlocked salmon were studied by transmission and scanning electron microscopy.
Both aquatic bacteria and fungi grew in abundance in the lesions, changing the fine structure of the epidermis.
In all of the lesions studied virus-like particles 30–33 nm in diameter were found. The relationship of these particles to the disease is still unresolved.     

Ecology and movement of juvenile salmonids in beaver-influenced and beaver-free tributaries in the Trøndelag province of Norway

There is concern that expanding beaver (Castor fiber) populations will negatively impact the important economic, recreational and ecological resources of Atlantic salmon (Salmo salar) and sea trout (Salmo trutta) populations in Europe. We studied how beaver dams influenced habitat, food resources, growth and movement of juvenile Atlantic salmon and trout on three paired beaver-dammed and beaver-free (control) tributaries of important salmon rivers in central Norway. Lotic reaches of beaver-dammed and control sites were similar in habitat and benthic prey abundance, and ponds were small (<3,000 m²). Though few juvenile salmonids were detected in ponds, trout and salmon were present in habitats below and above ponds (comprising 9%–31% and 0%–57% of the fish collected respectively). Trout dominated control sites (79%–99%), but the greatest proportion of Atlantic salmon were upstream of beaver ponds (0%–57%). Growth rates were highly variable, with no differences in growth between lotic reaches of beaver-dammed and control sites. The condition and densities of juvenile salmon and trout were similar in lotic reaches of beaver-dammed and control sites, though one beaver-dammed site with fine sediment had very few juvenile salmonids. Beaver dams did not block the movement of juvenile salmonids or their ability to use upstream habitats. However, the degree of repeated movements and the overall proportion of fish moving varied between beaver-dammed and control sites. The small scale of habitat alteration and the fact that fish were able to move past dams makes it unlikely that beaver dams negatively impact the juvenile stage of salmon or trout populations.     

Effects of intra‐ and interspecific competition and hydropeaking on growth of juvenile Atlantic salmon (Salmo salar)

The effects of hydropeaking and intra‐ and interspecific competition on the growth performance (growth in length, mass and lipid content) of juvenile Atlantic salmon Salmo salar and brown trout Salmo trutta were studied in six experimental channels (three experiencing hydropeaking and three controls with a stable discharge of water). Changes in the water‐covered area in the hydropeaking channels were small to avoid fish stranding. Each channel was divided into three similar‐sized sections and stocked with either low or high density of Atlantic salmon, or a mix of Atlantic salmon and brown trout, with the density of the latter equalling the high‐density treatment of Atlantic salmon. A marked effect of competition was visible as salmon in the low‐density treatment were significantly larger (27–33%) and had a higher mass (30–38%) than salmon in both the high‐density salmon treatment and the high‐density salmon and trout treatment. Hydropeaking had only minor and insignificant effects on the growth performance: overall final length, mass and body lipid content in the salmon experiencing hydropeaking differed by ?9%, ?7% and +2% compared with controls. Furthermore, there was no indication that the competitive regime influenced hydropeaking effects. The increase in both intra‐ and interspecific competition among the juvenile salmon had a pronounced and significant effect on growth. Our study adds to the growing evidence that energetic consequences of hydropeaking are likely to be small for Atlantic salmon and that stress and mortality associated with stranding represent the main source of population impact.     

Replication of the infectious salmon anaemia virus (ISAV) in rainbow trout, Oncorhynchus mykiss (Walbaum)

Infectious salmon anaemia (ISA) is a viral disease of farmed Atlantic salmon, Salmo salar L., in Norway. However, in laboratory experiments, the virus has also been found to propagate in trout, Salmo trutta L., where it is a persistent infection. It is crucial for the management of ISA in Norway, and for the prevention of spread to fish in other countries, that possible carriers of the virus are found. Another possible salmonid reservoir species is the rainbow trout, Oncorhynchus mykiss (Walbaum). After experimental infection, the ISA virus was found to be present in O. mykiss as late 28 days after infection, with a peak around day 20. The infection resulted in a significant drop in the haematocrit and haemorrhages on the liver in some specimens. The ISA virus was seen budding from endothelial cells lining blood vessels in the heart ventricle of challenged rainbow trout. It is concluded that the ISA virus is able to propagate in O. mykiss and that this species may function as a reservoir when cultured in areas where the virus is found. The virus does not seem to cause any significant mortalities of infected rainbow trout.