Animal manure and anhydrous ammonia amendment alter microbial carbon use efficiency,microbial biomass,and activities of dehydrogenase and amidohydrolases in semiarid agroecosystems

The potential negative impact of agricultural practices on soil and water quality is of environmental concern. The associated nutrient transformations and movements that lead to environmental concerns are inseparable from microbial and biochemical activities. Therefore, biochemical and microbiological parameters directing nitrogen (N) transformations in soils amended with different animal manures or inorganic N fertilizers were investigated. Soils under continuous corn cultivation were treated with N annually for 5 years at 56, 168, and 504 kg N ha⁻¹ in the form of swine effluent, beef manure, or anhydrous ammonia. Animal manure treatments increased dehydrogenase activity, microbial biomass carbon (C_mic) and N (N_mic) contents, and activities of amidohydrolases, including l-asparaginase, urease, l-glutaminase, amidase, and β-glucosaminidase. Soils receiving anhydrous ammonia demonstrated increased nitrate contents, but reduced microbiological and biochemical activities. All treatments decreased C_mic:organic C (C_org) ratios compared with the control, indicating reduced microbial C use efficiency and disturbance of C equilibrium in these soil environments. Activities of all enzymes tested were significantly correlated with soil C_org contents (P < 0.001, n = 108), but little correlation (r = 0.03, n = 36) was detected between C_mic and C_org. Activities of amidase and β-glucosaminidase were dominated by accumulated enzymes that were free of microbial cells, while activities of asparaginase and glutaminase were originated predominately from intracellular enzymes. Results indicated that soil microbial and biochemical activities are sensitive indicators of processes involved in N flow and C use efficiency in semiarid agroecosystems.     

Accounting for variability in soil microbial communities of temperate upland grassland ecosystems

This study aimed to determine the factors which regulate soil microbial community organisation and function in temperate upland grassland ecosystems. Soil microbial biomass (C_mic), activity (respiration and potential carbon utilisation) and community structure (phospholipid fatty acid (PLFA) analysis, culturing and community level physiological profiles (CLPP) (Biolog^®)) were measured across a gradient of three upland grassland types; Festuca–Agrostis–Galium grassland (unimproved grassland, National Vegetation Classification (NVC) — U4a); Festuca–Agrostis–Galium grassland, Holcus–Trifolium sub-community (semi-improved grassland, NVC — U4b); Lolium–Cynosurus grassland (improved grassland, NVC — MG6) at three sites in different biogeographic areas of the UK over a period of 1 year. Variation in C_mic was mainly due to grassland type and site (accounting for 55% variance, v, in the data). C_mic was significantly (P<0.001) high in the unimproved grassland at Torridon (237.4 g C m⁻² cf. 81.2 g C m⁻² in semi- and 63.8 g C m⁻² in improved grasslands) and Sourhope (114.6 g C m⁻² cf. in 44.8 g C m⁻² semi- and 68.3 g C m⁻² in improved grasslands) and semi-improved grassland at Abergwyngregyn (76.0 g C m⁻² cf. 41.7 g C m⁻² in un- and 58.3 g C m⁻² in improved grasslands). C_mic showed little temporal variation (v=3.7%). Soil microbial activity, measured as basal respiration was also mainly affected by grassland type and site (n=32%). In contrast to C_mic, respiration was significantly (P<0.001) high in the improved grassland at Sourhope (263.4 l h⁻¹m⁻² cf. 79.6 l h⁻¹m⁻² in semi- and 203.9 l h⁻¹m⁻² unimproved grasslands) and Abergwyngregyn (198.8 l h⁻¹m⁻² cf. 173.7 l h⁻¹m⁻² in semi- and 88.2 l h⁻¹m⁻² unimproved grasslands). Microbial activity, measured as potential carbon utilisation, agreed with the respiration measurements and was significantly (P<0.001) high in the improved grassland at all three sites (A₅₉₀ 0.14 cf. 0.09 in semi- and 0.07 in unimproved grassland). However, date of sampling also had a significant (P<0.001) impact on C utilisation potential (v=24.7%) with samples from April 1997 having highest activity at all three sites. Variation in microbial community structure was due, predominantly, to grassland type (average v=23.6% for bacterial and fungal numbers and PLFA) and date of sampling (average v=39.7% for bacterial and fungal numbers and PLFA). Numbers of culturable bacteria and bacterial PLFA were significantly (P<0.001) high in the improved grassland at all three sites. Fungal populations were significantly (P<0.01) high in the unimproved grassland at Sourhope and Abergwyngregyn. The results demonstrate a shift in soil microbial community structure from one favouring fungi to one favouring bacteria as grassland improvement increased. Numbers of bacteria and fungi were also significantly (P<0.001) higher in August than any other sampling date. Canonical variate analysis (CVA) of the carbon utilisation data significantly (P<0.05) differentiated microbial communities from the three grassland types, mainly due to greater utilisation of sugars and citric acid in the improved grasslands compared to greater utilisation of carboxylic acids, phenolics and neutral amino acids in the unimproved grasslands, possibly reflecting substrate availability in these grasslands. Differences in C_mic, activity and community structure between grassland types were robust over time. In addition, broad scale measures of microbial growth and activity (C_mic and respiration) showed little temporal variation compared to measures of soil microbial community structure, which varied quantitatively with respect to environmental variables (temperature, moisture) and plant productivity, hence substrate supply.     

Carbon and nitrogen enhancement in Cambisols and Vertisols by Acacia spp. in eastern Burkina Faso: Relation to soil respiration and microbial biomass

The current study tested the contribution of native Acacia species of the Sudano-Sahelian zone to improving organic carbon and nitrogen level in Cambisols and Vertisols with specific focus on variation in microbial biomass (C_mic), soil basal respiration (C_resp) and metabolic quotient (qCO₂). The results show enrichment in total organic carbon (C_total), in total nitrogen (N_total) and higher clay content under Acacia canopies as compared to adjacent open grasslands. The relative nutrient concentration in Acacia cover showed an increase in C_mic ranging from 203 to 572 μg g⁻¹ whereas in adjacent open grassland it varied from 100 to 254 CO₂–C μg g⁻¹. As a function of C_mic (r = 0.60), C_total (r = 0.70) and N_total (r = 0.70), C_resp was higher under Acacia canopies than open grassland and this difference was more pronounced when measured over lengthier incubation periods (10–21 days). A lower qCO₂ under Acacia cover (except for one site) demonstrated a change in microorganisms communities structure and higher substrate use efficiency as compared to open grassland. The results also show that soil texture, as well as vegetation cover, influenced microbial processes. The negative correlation between clay content and carbon mineralization (C_resp/C_total, qCO₂), and positive linear relation between clay and C_mic supported the hypothesis that finer soil texture protects soil microbial biomass against degradation and limits organic matter mineralization. The specific effects of soil typology and vegetation cover on C_mic and qCO₂ variability were significant, but the greater effects were attributed to vegetation cover.     

Microbial respiration activities of soils from different climatic regions of European Russia

The aim of this study was to survey and evaluate the microbial respiration of main soil types (gleyic Cryosols, umbric Albeluvisols, albic Luvisols, luvic Chernozems, Kastanozems) across European Russia, from semiarid to polar climatic zones. Soil was sampled from 0–5 and 5–10 cm layers at natural (forest, grassland, fallow) and corresponding sites under agricultural land use. Soil microbial biomass carbon (C_mic) determined by the substrate-induced respiration method and basal respiration (BR) were measured under standardized laboratory conditions (22 °C, 60% WHC). The ratios of BR/C_mic and C_mic/C_org were also calculated. C_mic and BR were highest in polar (gleyic Cryosols) and temperate (albic Luvisols, luvic Chernozems) climatic zones, the lowest were in boreal (umbric Luvisols) and semiarid (Kastanozems). C_mic, BR and C_mic/C_org ratios were higher in 0–5 cm layers compared to the corresponding 5–10 cm and in natural sites versus in arable. Principal component analysis yielded a clear separation of the vegetation zones with respect to the several principal components (PC). PC 1 was composed of C_mic, BR, soil chemical (C_org, N_tot) and texture parameters. PC 2 was composed of climatic (MAT, MAP) and soil pH variables. Three-way ANOVA indicated that “soil type”, “ecosystem” and “layer” factors, and their interactions accounted for almost 98 and 99% of the total variance in C_mic and BR, respectively.     

Effects of cultivation on soil microbiological properties in a freshwater marsh soil in Northeast China

The Sanjiang Plain has become an intensive area of land use/cover change in China. However, little is known about the effect of cultivation on soil microbiological properties in this freshwater marsh ecosystem. Our objective was to evaluate the effect of cultivation on mineralizable, microbial biomass, and total C in the Sanjiang Plain of Northeast China. Soil microbial biomass C (MBC) was 4346 ± 309 mg kg⁻¹ in undisturbed marsh and 229 mg kg⁻¹ in soil cultivated for 15 years. Undisturbed marsh soil had the highest microbial quotient (3.64%), which declined with increasing cultivation time (R² = 0.97, p < 0.01). Metabolic quotient increased with increasing cultivation time. Soil C mineralization in undisturbed marsh was 3.5 times that in soil cultivated for 1 year, and was 12 times that in soil cultivated for 15 years. Cultivation strongly affected measured soil microbiological properties.     

Conventional versus organic cropping and peat amendment: Impacts on soil microbiota and their activities

We measured soil microbiota and enzyme activities in order to compare conventional (CCS: chemical fertilisers, plant rotation with cereals dominating) and organic (OCS: green and farmyard manure, plant rotation including leguminous plants) cropping systems in a long-term field experiment. During the 3-year study period, strawberry was grown on the whole area and peat amendment was applied to a set of plots. Activities of 12 different enzymes, phospholipid fatty acids (PLFA) and microbial biomass (C_mic and N_mic) were measured twice each year. Dry weight (dw), water holding capacity (WHC) and pH were also measured. The enzyme activities were generally higher, arylsulphatase, phosphomonoesterase (PME) and esterase activities consistently, in the OCS than in the CCS. Other enzyme activities displayed higher activities either during 1 or 2 years or seasonally. Peat amendment increased PME, phosphodiesterase (PDE), leucine aminopeptidase (AP), chitinase, cellobiosidase, α-glucosidase and esterase activities but decreased arylsulphatase and initially alanine AP activities, whereas β-glucosidase and β-xylosidase activities were increased only during the 3rd year. Microbial biomass was higher in the OCS than in the CCS but peat addition decreased C_mic and N_mic at least initially. Both the OCS and peat addition increased soil PLFA content. Peat treatment also affected soil microbial structure as revealed by PLFA patterns, whereas the cropping system had no impact.     

Changes of microbial properties in (near-) rhizosphere soils after phytoextraction by Sedum alfredii H: A rhizobox approach with an artificial Cd-contaminated soil

The ultimate goal of soil remediation is to restore soil health. Soil microbial parameters are considered to be effective indicators of soil health. The aim of this study was to determine the effects of phytoextraction on microbial properties through the measurement of soil microbial biomass carbon, soil basal respiration and enzyme activities. For this purpose, a pre-stratified rhizobox experiment was conducted with the Cd hyperaccumulator Sedum alfredii H. for phytoextraction Cd from an artificial contaminated soil (15.81 mg kg⁻¹) under greenhouse conditions. The plant and soil samples were collected after growing the plant for three and six months with three replications. The results indicated that the ecotype of S. alfredii H. originating from an ancient silver mining site was a Cd-hyperaccumulator as it showed high tolerance to Cd stress, the shoot Cd concentration were as high as 922.6 mg kg⁻¹ and 581.9 mg kg⁻¹ at the two samplings, and it also showed high BF (58.4 and 36.8 after 3 and 6 months growth), and TF (5.8 and 5.1 after 3 and 6 months growth). The amounts of Cd accumulated in the shoots of S. alfredii reached to an average of 1206 μg plant⁻¹ after 6 months growth. Basal respiration, invertase and acid phosphatase activities of the rhizosphere soil separated by the shaking method were significantly higher (P < 0.01) than that of the near-rhizosphere soil and the unplanted soil after 3 months growth, so were microbial biomass carbon, urease, invertase and acid phosphatase activities of the rhizosphere soil after 6 months growth. Acid phosphatase activity of the 0–2 mm sub-layer rhizosphere soil collected by the pre-stratified method after 3 months growth was significantly higher (P < 0.05) than that of other sub-layer rhizosphere soils and bulk soil, and so were microbial biomass carbon, basal respiration, urease, invertase and acid phosphatase activities of the 0–2 mm sub-layer rhizosphere soil after 6 months growth. It was concluded that phytoextraction by S. alfredii could improve soil microbial properties, especially in rhizosphere, and this plant poses a great potential for the remediation of Cd contaminated soil.     

Decoupling of microbial glucose uptake and mineralization in soil

The rate of organic matter turnover in soil is a critical component of the terrestrial carbon cycle and is frequently estimated from measurements of respiration. For estimates to be reliable requires that isotopically labelled substrate uptake into the soil microbial biomass and its subsequent mineralization occurs almost simultaneously (i.e. no time delay). Here we investigated this paradigm using glucose added to an agricultural soil. Immediately after collection from the field, various concentrations of ¹⁴C-labeled glucose (1 μM to 10 mM) were added to soil and the depletion from the soil solution measured at 1–60 min after substrate addition. ¹⁴CO₂ production from the mineralization of glucose was simultaneously measured. The microbial uptake of glucose from soil solution was concentration-dependent and kinetic analysis suggests the operation of at least two distinct glucose transport systems of differing affinity. At glucose concentrations reflecting those naturally present in the soil solution (54±10 μM), the half-time (t_1/2) of exogenous glucose was extremely rapid at ca. 30 s. At higher glucose concentrations (100 μM to 10 mM), the t_1/2 values for the high-affinity carrier were altered little, but increasing proportions of glucose were taken up by the low affinity transport system. Glucose mineralization by the soil microbial community showed a significant delay after its uptake into the microbial biomass suggesting a decoupling of glucose uptake and subsequent respiration, possibly by dilution of glucose in labile metabolite pools. By fitting a double first order kinetic equation to the mineralization results we estimated the t_1/2 for the first rapid phase of respiration at natural soil solution glucose concentrations to be 6–8 min, but at least 87% of the added glucose was retained in the microbial biomass prior to mineralization. Our results suggest that in this soil the soil solution glucose pool turns over 100–1000 times each day, an order of magnitude faster than when determined from measurements of mineralization. These results imply that traditional isotopic based measurements of substrate turnover measured using CO₂ may vastly underestimate their rate of cycling in soil.     

Contribution of plant photosynthate to soil respiration and dissolved organic carbon in a naturally recolonising cutover peatland

The aim of this study was to investigate how three vascular plant species (Calluna vulgaris, Eriophorum angustifolium and Eriophorum vaginatum) colonising an abandoned cutover peatland affect fluxes of recent photosynthate to dissolved organic carbon (DOC), soil and plant respiration and shoot biomass. We used in situ ¹³CO₂ pulse labelling to trace carbon (C) throughout a 65 day pulse chase period. Between 16 and 35% of the pulse of ¹³C remained in shoot biomass after 65 days with significant differences between C. vulgaris and E. angustifolium (P = 0.009) and between C. vulgaris and E. vaginatum (P = 0.04). A maximum of 29% was detected in DOC beneath labelled plants and losses of ¹³C from peat respiration never exceeded 0.16% of the original pulse, showing that little newly fixed C was allocated to this pool. There were no significant differences between the different plant species with respect to ¹³C recovered from DOC or via peat respiration. More C was lost via shoot respiration; although amounts varied between the three plant species, with 4.94–27.33% of the ¹³C pulse respired by the end of the experiment. Significant differences in ¹³C recovered from shoot respiration were found between C. vulgaris and E. angustifolium (P = 0.001) and between E. angustifolium and E. vaginatum (P = 0.032). Analysis of δ¹³C of microbial biomass indicated that recently assimilated C was allocated to this pool within 1 day of pulse labelling but there were no significant differences in the ¹³C enrichment of the microbial biomass associated with the different plant species. The data suggest that peat respiration represents a small flux of recent assimilate compared to other fluxes and pools and that different vascular plant species show considerable variation in the quantities and dynamics of C allocated to DOC.     

Effects of nonylphenols on soil microbial activity and water retention

The main aim of this study is to analyze the influence of 4-nonylphenol (NP) on soil water retention and biological activity. Two doses of 4-nonylphenol (25 and 50 mg kg⁻¹) were tested in a loam soil with and without peat amendment. In general, one week after the start of the experiment, the soil water content retained at −0.75 MPa of soil suction was 18% higher in the soil amended and its basal respiration (BR) was 15% higher than soil without peat. In contrast, the microbial activity indices (CM: coefficient of mineralization or BR:total organic carbon (TOC) ratio; Cmic:Corg: microbial biomass carbon (MBC):TOC ratio; qCO₂: metabolic quotient or BR:MBC ratio) were higher in the soil without peat, compared to the soil amended with peat. On the other hand, the addition of NP to soil was able to modify soil biological but not physical (water retention, desorption) properties. When soil was amended with peat, MBC was reduced one week after applying NP. In contrast, no effects of NP on MBC were observed in the soil without peat. BR was reduced by 16% one week after applying 50 mg kg⁻¹ of NP to soil with peat, and was increased by 46% one week after applying 25 mg kg⁻¹ of NP to soil without peat. The effects of NP on MBC and BR could be associated more with the adsorption of NP by soil organic matter, while changes in CM or Cmic:Corg ratio were more closely related to changes in soil water retention. The potential toxic effects of NP (high qCO₂ values) were only observed in the absence of peat amendments. Peat addition reduced NP toxic effects on microorganisms.     

Carbon flow into microbial and fungal biomass as a basis for the belowground food web of agroecosystems

The origin and quantity of plant inputs to soil are primary factors controlling the size and structure of the soil microbial community. The present study aimed to elucidate and quantify the carbon (C) flow from both root and shoot litter residues into soil organic, extractable, microbial and fungal C pools. Using the shift in C stable isotope values associated with replacing C3 by C4 plants we followed root- vs. shoot litter-derived C resources into different soil C pools. We established the following treatments: Corn Maize (CM), Fodder Maize (FM), Wheat + maize Litter (WL) and Wheat (W) as reference. The Corn Maize treatment provided root- as well as shoot litter-derived C (without corn cobs) whereas Fodder Maize (FM) provided only root-derived C (aboveground shoot material was removed). Maize shoot litter was applied on the Wheat + maize Litter (WL) plots to trace the incorporation of C4 litter C into soil microorganisms. Soil samples were taken three times per year (summer, autumn, winter) over two growing seasons. Maize-derived C signal was detectable after three to six months in the following pools: soil organic C (C_org), extractable organic C (EOC), microbial biomass (C_mic) and fungal biomass (ergosterol). In spite of the lower amounts of root- than of shoot litter-derived C inputs, similar amounts were incorporated into each of the C pools in the FM and WL treatments, indicating greater importance of the root- than shoot litter-derived resources for the soil microorganisms as a basis for the belowground food web. In the CM plots twice as much maize-derived C was incorporated into the pools. After two years, maize-derived C in the CM treatment contributed 14.1, 24.7, 46.6 and 76.2% to C_org, EOC, C_mic and ergosterol pools, respectively. Fungi incorporated maize-derived C to a greater extent than did total soil microbial biomass.     

Differences in soil enzyme activities,microbial community structure and short-term nitrogen mineralisation resulting from farm management history and organic matter amendments

Changes in soil microbial biomass, enzyme activities, microbial community structure and nitrogen (N) dynamics resulting from organic matter amendments were determined in soils with different management histories to gain better understanding of the effects of long- and short-term management practices on soil microbial properties and key soil processes. Two soils that had been under either long-term organic or conventional management and that varied in microbial biomass and enzyme activity levels but had similar fertility levels were amended with organic material (dried lupin residue, Lupinus angustifolius L.) at amounts equivalent to 0, 4 and 8 t dry matter lupin ha^?1. Microbial biomass C and N, arginine deaminase activity, fluorescein diacetate hydrolysis, dehydrogenase enzyme activity and gross N mineralisation were measured in intervals over an 81-day period. The community structure of eubacteria and actinomycetes was examined using PCR–DGGE of 16S rDNA fragments. Results suggested that no direct relationships existed between microbial community structure, enzyme activities and N mineralisation. Microbial biomass and activity changed as a result of lupin amendment whereas the microbial community structure was more strongly influenced by farm management history. The addition of 4 t ha^?1 of lupin was sufficient to stimulate the microbial community in both soils, resulting in microbial biomass growth and increased enzyme activities and N mineralisation regardless of past management. Amendment with 8 t lupin ha^?1 did not result in an increase proportional to the extra amount added; levels of soil microbial properties were only 1.1–1.7 times higher than in the 4 t ha^?1 treatment. Microbial community structure differed significantly between the two soils, while no changes were detected in response to lupin amendment at either level during the short-term incubation. Correlation analyses for each treatment separately, however, revealed differences that were inconsistent with results obtained for soil biological properties suggesting that differences might exist in the structure or physiological properties of a microbial component that was not assessed in this study.     

Sequentially extracted phosphorus fractions in peat‐derived soils

Phosphorus (P) forms were sequentially extracted from peat derived soils (Eutric Histosols and Gleysols) at eight sites in Saxony‐Anhalt (Germany) to disclose general differences in P pools between mineral and organic soils and to investigate effects of peat humification and oxidation in conjunction with land use and soil management on the P status of soils. Overall 29 samples providing a wide variety of basic chemical properties were subjected to the Hedley fractionation. The Histosol topsoils contained more total P (P_t) (1345 ± 666 mg kg^—1) than the Gleysol topsoils (648 ± 237 mg kg^—1). The predominant extractable fractions were H₂SO₄‐P (36—63 % of P_t) in calcareous and NaOH‐P_o (0—46 % of P_t) in non‐calcareous Histosols. These soils had large pools of residual P (13—93 % of P_t). Larger contents and proportions of P_o and of labile P fractions generally distinguished organic from mineral soils. Regression analyses indicated that poorly crystalline pedogenic oxides and organic matter were binding partners for extractable and non‐extractable P. Intensive management that promotes peat humification and oxidation results in disproportional enrichments of labile P fractions (resin‐P, NaHCO₃‐P_i, and NaHCO₃‐P_o). These changes in P chemistry must be considered for a sustainable management of landscapes with Histosols and associated peat derived soils.     

35S-sulphate reduction and transformation in peat

The incorporation of ³⁵S-labelled sulphate into reduced inorganic forms and into organic S has been studied in peat samples from two contrasting sites, a deep blanket peat and a shallow hill blanket peat. During anaerobic incubation, ³⁵S was rapidly incorporated into AVS (acid volatile sulphide), elemental S and Cr-reducible S but these pools showed evidence of rapid recycling. In the longer term, ³⁵S was found in the ester sulphate pool and in a residual S pool, taken to be principally C-bonded organic S. Incorporation was more rapid in the deep peat than in the hill peat, in peat from wet areas more than dry areas and in subsurface (10–20 cm) peat more than in surface (0–10 cm) peat. Incorporation in the hill peat under aerobic incubation into either reduced inorganic or organic forms was very limited. Mean sulphate reduction rates at the temperature of incubation (26°C) were estimated to be in the range 60–12,000 μg S kg⁻¹ wet weight peat d⁻¹ while mean turnover times of reduced S were 17 and 550 d for the deep and hill peats, respectively.     

Microbial utilization and mineralization of [14C]glucose added in six orders of concentration to soil

The substrate availability for microbial biomass (MB) in soil is crucial for microbial biomass activity. Due to the fast microbial decomposition and the permanent production of easily available substrates in the rooted top soil mainly by plants during photosynthesis, easily available substrates make a very important contribution to many soil processes including soil organic matter turnover, microbial growth and maintenance, aggregate stabilization, CO₂ efflux, etc. Naturally occurring concentrations of easily available substances are low, ranging from 0.1 μM in soils free of roots and plant residues to 80 mM in root cells. We investigated the effect of adding ¹⁴C-labelled glucose at concentrations spanning the 6 orders of magnitude naturally occurring concentrations on glucose uptake and mineralization by microbial biomass. A positive correlation between the amount of added glucose and its portion mineralized to CO₂ was observed: After 22 days, from 26% to 44% of the added 0.0009 to 257 μg glucose C g^?1 soil was mineralized. The dependence of glucose mineralization on its amount can be described with two functions. Up to 2.6 μg glucose C g^?1 soil (corresponds to 0.78% of initial microbial biomass C), glucose mineralization increased with the slope of 1.8% more mineralized glucose C per 1 μg C added, accompanied by an increasing incorporation of glucose C into MB. An increased spatial contact between micro-organisms and glucose molecules with increasing concentration may be responsible for this fast increase in mineralization rates (at glucose additions <2.6 μg C g^?1). At glucose additions higher than 2.6 μg C g^?1 soil, however, the increase of the glucose mineralization per 1 μg added glucose was much smaller as at additions below 2.6 μg C g^?1 soil and was accompanied by decreasing portions of glucose ¹⁴C incorporated into microbial biomass. This supports the hypothesis of decreasing efficiency of glucose utilization by MB in response to increased substrate availability in the range 2.6–257 μg C g^?1 (=0.78–78% of microbial biomass C). At low glucose amounts, it was mainly stored in a chloroform-labile microbial pool, but not readily mineralized to CO₂. The addition of 257 μg glucose C g^?1 soil (0.78 μg C glucose μg^?1 C micro-organisms) caused a lag phase in mineralization of 19 h, indicating that glucose mineralization was not limited by the substrate availability but by the amount of MB which is typical for 2nd order kinetics.     

Spatial variability of enzyme activities and microbial biomass in the upper layers of Quercus petraea forest soil

Extracellular lignocellulose-degrading enzymes are responsible for the transformation of organic matter in hardwood forest soils. The spatial variability on a 12 × 12 m plot and vertical distribution (0–8 cm) of the ligninolytic enzymes laccase and Mn-peroxidase, the polysaccharide-specific hydrolytic enzymes endoglucanase, endoxylanase, cellobiohydrolase, 1,4-β-glucosidase, 1,4-β-xylosidase and 1,4-β-N-acetylglucosaminidase and the phosphorus-mineralizing acid phosphatase were studied in a Quercus petraea forest soil profile. Activities of all tested enzymes exhibited high spatial variability in the L and H horizons. Acid phosphatase and 1,4-β-N-acetylglucosaminidase exhibited low variability in both horizons, while the variability of Mn-peroxidase activity in the L horizon, and endoxylanase and cellobiohydrolase activities in the H horizon were very high. The L horizon contained 4× more microbial biomass (based on PLFA) and 7× fungal biomass (based on ergosterol content) than the H horizon. The L horizon also contained relatively more fungi-specific and less actinomycete-specific PLFA. There were no significant correlations between enzyme activities and total microbial biomass. In the L horizon cellulose and hemicellulose-degrading enzymes correlated with each other and also with 1,4-β-N-acetylglucosaminidase and acid phosphatase activities. Laccase, Mn-peroxidase and acid phosphatase activities correlated in the H horizon. The soil profile showed a gradient of pH, organic carbon and humic compound content, microbial biomass and enzyme activities, all decreasing with soil depth. Ligninolytic enzymes showed preferential localization in the upper part of the H horizon. Differences in enzyme activities were accompanied by differences in the microbial community composition where the relative amount of fungal biomass decreased and actinomycete biomass increased with soil depth. The results also showed that the vertical gradients occur at a small scale: the upper and lower parts of the H horizon only 1 cm apart were significantly different with respect to seven out of nine activities, microbial biomass content and community composition.     

Microbial mineralization of biochar and wheat straw mixture in soil: A short-term study

A short-term incubation study was carried out to investigate the effect of biochar addition to soil on CO₂ emissions, microbial biomass, soil soluble carbon (C) nitrogen (N) and nitrate–nitrogen (NO₃–N). Four soil treatments were investigated: soil only (control); soil + 5% biochar; soil + 0.5% wheat straw; soil + 5% biochar + 0.5% wheat straw. The biochar used was obtained from hardwood by pyrolysis at 500 °C. Periodic measurements of soil respiration, microbial biomass, soluble organic C, N and NO₃–N were performed throughout the experiment (84 days). Only 2.8% of the added biochar C was respired, whereas 56% of the added wheat straw C was decomposed. Total net CO₂ emitted by soil respiration suggested that wheat straw had no priming effect on biochar C decomposition. Moreover, wheat straw significantly increased microbial C and N and at the same time decreased soluble organic N. On the other hand, biochar did not influence microbial biomass nor soluble organic N. Thus it is possible to conclude that biochar was a very stable C source and could be an efficient, long-term strategy to sequester C in soils. Moreover, the addition of crop residues together with biochar could actively reduce the soil N leaching potential by means of N immobilization.     

Changes in soil microbial biomass and functional diversity with a nitrogen gradient in soil columns

Fertilization generates nutrient patches that may impact soil microbial activity. In this study, nitrogen patches were generated by adding ammonium sulfate or urea to soil columns (length 25 cm; internal diameter 7.2 cm). Changes in nitrogen transformation, soil microbial biomass, and microbial functional diversity with the nitrogen gradients were investigated to evaluate the response of microbial activity to chemical fertilizer nutrient patches. After applying of ammonium sulfate or urea, the added nitrogen migrated about 7 cm. Microbial biomass carbon (MBC) was lower in fertilized soil than in the control (CK) treatment at the same soil layers. MBC increased with soil depth while microbial biomass nitrogen (MBN) decreased. BIOLOG analysis indicated that the average well color development (AWCD) and functional diversity indices of the microbial communities were lower in the 1 cm and 2 cm soil layers after application of ammonium sulfate; the highest values were in the 3 cm soil layer. AWCD and Shannon indices from the 1 to 5 cm soil layers were higher than those from other soil layers under urea application. Both principal component analysis and carbon substrate utilization analysis showed significant separation of soil microbial communities among different soil layers under application of ammonium sulfate or urea. Microbial activity was substantially decreased when NH₄⁺-N concentration was higher than 528.5 mg kg⁻¹ (1–3 cm soil layer under ammonium sulfate application) or 536.8 mg kg⁻¹ (1 cm soil layer under urea application). These findings indicated that changes in soil microbial biomass and microbial functional diversity can occur with a nitrogen gradient. The extent of changes depends on the nitrogen concentration and the form of inorganic fertilizer.     

Influence of reduced tillage on earthworm and microbial communities under organic arable farming

Although reduced tillage is an agricultural practice reported to decrease soil erosion and external inputs while enhancing soil fertility, it has still rarely been adopted by European organic farmers. The objective of this study was to assess the long-term interactive effects of tillage (conventional (CT) vs. reduced (RT)) and fertilization (slurry (S) vs. composted manure/slurry (MCS)) on earthworms and microbial communities in a clay soil under spelt in an organic 6-year crop rotation. Earthworm populations (species, density and biomass, cocoons) were investigated by handsorting the soil nine years after initial implementation of the treatments. Soil microbial carbon (C_mic) and nitrogen (N_mic) were measured by chloroform-fumigation extraction and a simplified phospholipid fatty acid (PLFA) analysis was used to separate for populations of bacteria, fungi and protozoa. Significantly increased total earthworm density in RT plots was mainly attributed to increased numbers of juveniles. Moreover, we found five times more cocoons with RT. Species richness was not affected by the treatments, but tillage treatments had differentially affected populations at the species-level. In addition, cluster analysis at the community level revealed two distinct groups of plots in relation to tillage treatments. In RT plots C_mic increased in the 0–10 cm and 10–20 cm soil layers, while PLFA concentrations indicative of Gram-negative bacteria, fungi and protozoa only increased in the topsoil. Lower bacteria-to-fungi ratios in the upper soil layer of RT plots indicated a shift to fungal-based decomposition of organic matter whereas a higher C_mic-to-C_org ratio pointed towards enhanced substrate availability. Slurry application decreased microbial biomass and enhanced density of juvenile anecic earthworms but overall fertilization effect was weak and no interactions with tillage were found. In conclusion, tillage is a major driver in altering communities of earthworms and microorganisms in arable soils. The use of reduced tillage provides an approach for eco-intensification by enhancing inherent soil biota functions under organic arable farming.     

Relationships between soil pH and microbial properties in a UK arable soil

Effects of changing pH along a natural continuous gradient of a UK silty-loam soil were investigated. The site was a 200 m soil transect of the Hoosfield acid strip (Rothamsted Research, UK) which has grown continuous barley for more than 100 years. This experiment provides a remarkably uniform soil pH gradient, ranging from about pH 8.3 to 3.7. Soil total and organic C and the ratio: (soil organic C)/(soil total N) decreased due to decreasing plant C inputs as the soil pH declined. As expected, the CaCO₃ concentration was greatest at very high pH values (pH > 7.5). In contrast, extractable Al concentrations increased linearly (R² = 0.94, p < 0.001) from below about pH 5.4, while extractable Mn concentrations were largest at pH 4.4 and decreased at lower pHs. Biomass C and biomass ninhydrin-N were greatest above pH 7. There were statistically significant relationships between soil pH and biomass C (R² = 0.80, p < 0.001), biomass ninhydrin-N (R² = 0.90, p < 0.001), organic C (R² = 0.83, p < 0.001) and total N (R² = 0.83, p < 0.001), confirming the importance of soil organic matter and pH in stimulating microbial biomass growth. Soil CO₂ evolution increased as pH increased (R² = 0.97, p < 0.001). In contrast, the respiratory quotient (qCO₂) had the greatest values at either end of the pH range. This is almost certainly a response to stress caused by the low p. At the highest pH, both abiotic (from CaCO₃) and biotic Co₂ will be involved so the effects of high pH on biomass activity are confounded. Microbial biomass and microbial activity tended to stabilise at pH values between about 5 and 7 because the differences in organic C, total N and Al concentrations within this pH range were small. This work has established clear relationships between microbial biomass and microbial activity over an extremely wide soil pH range and within a single soil type. In contrast, most other studies have used soils of both different pH and soil type to make similar comparisons. In the latter case, the effects of soil pH on microbial properties are confounded with effects of different soil types, vegetation cover and local climatic conditions.