Soil pH and plant diversity drive co-occurrence patterns of ammonia and nitrite oxidizer in soils from forest ecosystems

In this study, we investigated how co-occurrence patters of ammonia and nitrite oxidizers, which drive autotrophic nitrification, are influenced by tree species composition as well as soil pH in different forest soils. We expected that a decline of ammonia oxidizers in coniferous forests, as a result of excreted nitrification inhibitors and at acidic sites with low availability of ammonia, would reduce the abundance of nitrite-oxidizing bacteria (NOB). To detect shifts in co-occurrence patterns, the abundance of key players was measured at 50 forest plots with coniferous respectively deciduous vegetation and different soil pH levels in the region Schwäbische Alb (Germany). We found ammonia-oxidizing archaea (AOA) and Nitrospira-like NOB (NS) to be dominating in numbers over their counterparts across all forest types. AOA co-occurred mostly with NS, while bacterial ammonia oxidizers (AOB) were correlated with Nitrobacter-like NOB (NB). Co-occurrence patterns changed from tight significant relationships of all ammonia and nitrite oxidizers in deciduous forests to a significant relationship of AOB and NB in coniferous forests, where AOA abundance was reduced. Surprisingly, no co-occurrence structures between ammonia and nitrite oxidizers could be determined at acidic sites, although abundances were correlated to the respective nitrogen pools. This raises the question whether interactions with heterotrophic nitrifiers may occur, which needs to be addressed in future studies.     

An Efficient Way for Nitrifying Bacteria Enrichment with Coal Ash: Nitrification and Microbial Community

In this study, five different fillers: coal ash, fiber-ball, polypropylene, ceramic, and polyhedron empty ball were used for cultivating nitrifying bacteria by increasing influent ammonia concentration gradually in sequencing batch reactors (SBRs). The results of ammonia removal performance showed that the reactor with coal ash has the highest NH₄ ⁺-N removal rate all the time. The ammonia removal rate of it averagely reached ≥ 95% under the condition of hydraulic retention time (HRT), dissolved oxygen (DO), pH was 12 h, 4.5 ± 0.5 mg/L, 7.5–8.5, respectively, even when the ammonia nitrogen loading reached 1000 mg/L. MiSeq Highthrough sequence was used for analyzing microbial community. The results revealed that obvious variation have occurred among the reactors after 48 days of operation; however, Nitrosomonas was enriched in large amount and became the dominant genus except in the reactor with polypropylene. Compared with other carriers, coal ash can enrich more nitrifying bacteria, the cell biomass of Nitrosomonas increased from 12.25 to 384.18 mg/L, which was 5.5 times more than the negative control. The use of coal ash as filler realizes the enrichment of a large amount of nitrifying bacteria in a short period, which guarantees a highly efficient nitrification.     

Plant biomass management impacts on short-term soil phosphorus dynamics in a temperate grassland

The objective of this study was to quantify the combined effects of long-term plant biomass retention/removal and environmental conditions on soil microbial biomass phosphorus (P), bioavailable P, and acid phosphomonoesterase activity. Topsoil samples (0–2.5 and 2.5–5 cm) were collected from replicate field-based plots that had been maintained under contrasting plant biomass retention and removal regime for 21 years. Samples were collected on 14 occasions over a 17-month period and assessed for microbial P, bioavailable P, and phosphomonoesterase activity. All P measurements were consistently and significantly higher under plant biomass retention compared with biomass removal. Temporal variations in microbial P and phosphomonoesterase activity were evident in top soil (0–2.5 cm) and were driven by environmental conditions, mainly soil moisture, rainfall, and potential evapotranspiration, while bioavailable P had no temporal variation. Detailed analysis of microbial P data for the top 2.5-cm soil depth revealed that annual P flux through this pool was two times greater under biomass retention (10.3 kg P ha^?1 year^?1) compared with plant biomass removal (5.0 kg P ha^?1 year^?1). Similar and consistent trends were observed in soil from 2.5- to 5-cm sampling depth; however, differences were not significant. The findings of this study confirm the importance of the microbial biomass in determining the bioavailability of P in temperate grassland systems.     

污泥反硝化除磷-诱导磷结晶工艺中硝化池内的微生物特性

为了探究双污泥系统下反硝化除磷-诱导磷结晶工艺中硝化池内微生物特性,该文利用原位荧光杂交（fluorescence in situ hybridization,FISH）技术、电子显微镜扫描（scanning electron micrograph,SEM）方法和Image-Pro Plus（IPP）软件考察了该工艺中硝化细菌的种群结构、形态和硝化污泥微观三维结构图。结果表明：该工艺中硝化池内氨氧化细菌（ammonia-oxidizing bacteria,AOB）数量要多于亚硝酸盐氧化细菌（nitrite-oxidizing bacteria,NOB）,占总细菌的比例分别为46.2%,28.5%,且AOB处于污泥颗粒外层而NOB处于污泥颗粒内层,可能由于NOB利用AOB的代谢产物所致;工艺中硝化细菌多以球形或短杆菌为主,NOB生长时多以几个细胞形成小团聚体,而AOB生长时则形成大的团聚体;通过硝化污泥微观三维结构发现,污泥外层呈密实状而内层较疏松且有空洞存在,可能由于污泥外层和内层微生物的丰度差异、营养物质和溶解氧的浓度差异所致。此外,与传统的单污泥污水处理工艺相比,双污泥工艺明显地增强了硝化细菌的生长和富集能力。     

Nitrogen uptake efficiency of finger millet grown in hydroponic culture

The optimum nitrogen requirement along with nitrogen uptake efficiency of finger millet (Eleusine coracana) for obtaining plants of a high phenotypic quality was studied in this research using hydroponic culture. 20 days old seedlings were transferred in nutrient solution containing all the essential macro and micro nutrients. Plants were subjected to three treatments of nitrate viz. 0.05 mM, 0.1 mM and 0.5 mM by dissolving it in the nutrient solution. Plants grown in nutrient solution devoid of nitrate were treated as control. Plants grown in 0.5 mM nitrate conc. attained more height compared to other low nitrogen treatments (0.1 mM and 0.05 mM). Similarly plants of 0.5 mM nitrate treatments possessed more number of lateral roots, surface area of leaves, dry weight of plants and chlorophyll content compared to other low nitrogen treatments. Specific activity of nitrate reductase in plants treated with 0.5 mM concentration was found nearly 3 times higher than that of control plants; similarly, specific activity of nitrite reductase in 0.5 mM treated plants was also high compared to other low nitrogen treatments followed by control. The results of the present investigation therefore indicate that nitrogen uptake efficiency as revealed by the activities of nitrate reductase and nitrite reductase was high in 0.5 mM nitrate treatment. It also shows that 0.5 mM nitrate is optimum nitrogen concentration for the growth of finger millet in hydroponic condition.     

Removal and Transformation of Pollutants in a Two-Line Denitrifying Phosphorus Removal Process Treating Low C/N Municipal Wastewater: Influence of Hydraulic Retention Time

A two-line denitrifying phosphorus removal process (2L-DPR) was established treating low C/N municipal wastewater efficiently in our previous studies, while hydraulic retention time (HRT) is one of the most important factors determining the substrate loading, contact time for biomass, and pollutants and further affect performance of the whole system. Removal and transformation mechanism of organic carbon (C), nitrogen (N), and phosphorus (P) were investigated together with mass balance under various HRTs (6, 9, and 18 h) in the established 2L-DPR process. The results showed that in anaerobic units, the concentration of the main storage products in activated sludge such as poly-hydroxyvalerate (PHV) and poly-hydroxybutyrate (PHB) at HRT of 9 h was higher than that under other HRTs. The highest TN and TP removal efficiency was also achieved under the HRT of 9 h with removal rates of 55.9% and 84.6% respectively. Increasing HRT from 6 to 9 h greatly enhanced TN removal in anoxic and aerobic units; however, HRTs had little influence on COD removal with effluent concentration of 48.6, 49.1, and 48.9 mg/L, respectively. HRT affected phosphorus up-taken in anoxic and aerobic units rather than on the release of phosphorus processes in anaerobic units.     

Comammox—a newly discovered nitrification process in the terrestrial nitrogen cycle

Purpose

Nitrification, the microbial oxidation of ammonia to nitrate via nitrite, is a pivotal component of the biogeochemical nitrogen cycle. Nitrification was conventionally assumed as a two-step process in which ammonia oxidation was thought to be catalyzed by ammonia-oxidizing archaea (AOA) and bacteria (AOB), as well as nitrite oxidation by nitrite-oxidizing bacteria (NOB). This long-held assumption of labour division between the two functional groups, however, was challenged by the recent unexpected discovery of complete ammonia oxidizers within the Nitrospira genus that are capable of converting ammonia to nitrate in a single organism (comammox). This breakthrough raised fundamental questions on the niche specialization and differentiation of comammox organisms with other canonical nitrifying prokaryotes in terrestrial ecosystems.

Materials and methods

This article provides an overview of the recent insights into the genomic analysis, physiological characterization and environmental investigation of the comammox organisms, which have dramatically changed our perspective on the aerobic nitrification process. By using quantitative PCR analysis, we also compared the abundances of comammox Nitrospira clade A and clade B, AOA, AOB and NOB in 300 forest soil samples from China spanning a wide range of soil pH.

Results and discussion

Comammox Nitrospira are environmentally widespread and numerically abundant in natural and engineered habitats. Physiological data, including ammonia oxidation kinetics and metabolic versatility, and comparative genomic analysis revealed that comammox organisms might functionally outcompete other canonical nitrifiers under highly oligotrophic conditions. These findings highlight the necessity in future studies to re-evaluate the niche differentiation between ammonia oxidizers and their relative contribution to nitrification in various terrestrial ecosystems by including comammox Nitrospira in such comparisons.

Conclusions

The discovery of comammox and their broad environmental distribution added a new dimension to our knowledge of the biochemistry and physiology of nitrification and has far-reaching implications for refined strategies to manipulate nitrification in terrestrial ecosystems and to maximize agricultural productivity and sustainability.

     

Interaction of Magnesium–Iron–Carbonic-Layered Double Hydroxides with As(III)

Static granular bed reactor (SGBR) and upflow anaerobic sludge blanket (UASB) reactor were demonstrated at mesophilic condition for the treatment of pulp and paper mill wastewater. The hydraulic retention times (HRTs) were varied from 4 to 24 h following 29-day start-up period. The overall chemical oxygen demand (COD) removal efficiency of the SGBR was higher than the UASB during this study. At 4 h HRT, the COD removal was greater than 70 % for the SGBR and 60 % for the UASB. Biomass yield and volatile fatty acids concentration of SGBR were slightly less than UASB at organic loading rates ranging from 1.2 to 5.1 kg/m³/day. The results indicated that the SGBR system can be considered a viable alternative system for anaerobic treatment for pulp and paper wastewater.     

Behavior of Pilot-Scale Constructed Wetlands in Removing Nutrients and Sediments Under Varying Environmental Conditions

Water resources are threatened globally and declining water quality is primarily due to stormwater, agricultural, urban, and mining runoffs. Steamboat Creek in Nevada is the largest non point source (NPS) of pollution to the Truckee River. Treatment wetlands are a cost-effective and reliable technique to control NPS pollution, therefore, a large-scale wetland along Steamboat Creek has been proposed as a component of a regional watershed restoration plan. This study used ten parallel pilot-scale wetland mesocosms, and tested the effects of drying and rewetting, hydraulic retention time (HRT), and high nitrogen loading on the efficiency of nutrient and total suspended solids (TSS) removal. Drying and rewetting produced noticeable effects on nutrient retention, but the effect was short-lived. During longer HRT period nutrient removal in manipulated mesocosms with an 8 h HRT were higher than controls with a 4 h HRT. Reducing the HRT from 4 h to 30 min further decreased nutrient interception. During increased influent nitrogen loading (9.5?±?2.4 mg l^?1), manipulated mesocosms functioned as sinks for total nitrogen (TN) with removal efficiency increasing from 45?±?13% to 87?±?9%. The average change in TN concentration was 9.1?±?2.2 mg l^?1. Drying/rewetting and varying HRT influenced total phosphorus (TP) and TSS similarly, and TP removal was associated with TSS removal. Results can help make decisions regarding wetland construction, management, and operation more effective in order to reduce nutrient loads to the Truckee River.     

海绵铁缓解污水厌氧氨氧化反应器中硝酸盐积累的效果

该文旨在通过向厌氧氨氧化反应器中投加海绵铁来减轻厌氧SBR(sequencingbatchreactoractivatedsludge process)反应器中的硝酸盐积累,试验研究了海绵铁与硝酸盐和亚硝酸盐在静态条件下的反应。在静态条件下,部分硝酸盐和亚硝酸盐被海绵铁还原成了氨。对比动态试验表明投加海绵铁可以将SBR出水硝酸盐质量浓度控制在25～30 mg/L左右。相同条件下不投加海绵铁出水硝酸盐质量浓度不断累积,直至超过55 mg/L。这可能是由于铁将硝酸盐还原为亚硝酸盐并与厌氧氨氧化进行了耦合。采用高通量测序发现投加海绵铁的反应器中厌氧氨氧化菌在微生物群落中所占的比例(22.55%)约为不投加反应器(8.85%)的3倍,表明投加海绵铁有利于反应器中厌氧氨氧化(ANAMMOX)菌的生长和厌氧氨氧化反应器的启动。     

Effect of nitrogen dioxide on nitrite oxidation and nitrite-oxidizing populations in soil

When nitrogen dioxide was added to soil at a rate equivalent to 51μg Ng^?1 soil, the nitrite formed was oxidized logarithmically. The numbers of nitrite-oxidizing microorganisms also increased logarithmically, but the final count was too low to account for the amount of nitrite metabolized. In soil treated with NO₂ at a rate equivalent to 106μg Ng^?1, the nitrite formed was oxidized, but the counts of autotrophic nitrite oxidizers did not rise. Discrepancies between predicted bacterial numbers and nitrifying activity were also noted in soils amended with nitrite.     

The Control of a Small Dam in Nutrient Inputs to a Hypertrophic Estuary in a Mediterranean Climate

A two-year study was carried out in the lower part of the Palmones River to describe the role of a small dam controlling the nutrient fluxes to the estuary. Results showed an important spatial heterogeneity in the nutrient content and water properties of lowland catchment due to the effects of the small dam and the effluents of a sewage treatment work. Taking into account the values of hydraulic retention time, the dam could be considered as an optimally dimensioned pre-dam. Therefore, it removed on average more than 25% of total phosphorus (TP) while no net removal was obtained for TN during the studied period. Palmones River exported 11.3 TonsP year^?1 of TP and 72.1 TonsN year^?1 of TN to the estuary showing important seasonal differences. Less than 10% from the total amount of nutrient was exported during low flow conditions, while in four months with important flooding events, the percentage of total nitrogen exported exceeded 64%.     

Effect of Fixed Media Surface Area on Biofouling and Nutrients Removal in Fixed Film Membrane Bioreactor Treating Sewage at Medium and High Fluxes

This study investigates effects of fixed film surface area increment on removal efficacy and biofouling in membrane bioreactor (MBR). For this purpose, a lab-scale membrane bioreactor was used. Domestic wastewater was fed into it. Three different trials were conducted at different fluxes; 15, 20, and 25 L/m²/h (LMH). Every trial was conducted using four different scenarios by varying surface area of fixed media viz. 0, 100, 150, and 200 m²/m³. Removal of pollutants viz. chemical oxygen demand (COD), biochemical oxygen demand (BOD), total organic content (TOC), total Khjdel nitrogen (TKN), and phosphorous was studied. In addition, cake resistance, pore resistance, and total resistance were also observed for aforementioned scenarios. The results demonstrated that pollutant removal efficiencies increased as the surface area per unit volume of bioreactor was increased. Conversely, the removal efficiency decreased with increase in the fluxes. In the case of biofouling, it increased while increasing the surface area or flux. The fixed media surface area increments proved beneficial in terms of removal efficiencies but at the cost of reduced operation time of MBR.     

Long-Term Effects of Tourmaline on Nitrogen Removal from Wastewater and Bacterial Community Shift in Activated Sludge at Low Temperatures

In this study, the long-term effects of ultrafine tourmaline particles (UTPs) on the removal of nitrogen in wastewater, activated sludge viability and microbial population dynamics at low temperatures were investigated. Although there was no significant effect on the effluent concentrations of nitrogen after long-term exposure to 1 g/L UTPs at low temperatures, the oxidation rate of NH₄⁺-N and the accumulation rate of NO₂^?-N increased and the formation rate of NO₃^?-N decreased during the aerobic phase of sequencing batch reactors. However, long-term exposure to 1 g/L UTPs did not significantly affect the microbial community richness and the community diversity of activated sludge at low temperatures. The mechanism of tourmaline was studied by assessing the dominant functional species involved in biological nitrogen removal from wastewater. It was found that 1 g/L UTPs increased the removal rate of nitrogen by reducing the relative abundance of nitrite oxidizing bacteria and increasing the relative abundance of ammonia oxidizing bacteria after long-term operation at low temperatures.     

Cadmium Removal by Two Strains of Desmodesmus pleiomorphus Cells

The capacity of microalgae to accumulate heavy metals has been widely investigated for its potential applications in wastewater (bio)treatment. In this study, the ability of Desmodesmus pleiomorphus (strain L), a wild strain isolated from a polluted environment, to remove Cd from aqueous solutions was studied, by exposing its biomass to several Cd concentrations. Removal from solution reached a maximum of 61.2 mg Cd g^?1 biomass by 1 day, at the highest initial supernatant concentration used (i.e., 5.0 mg Cd L^?1), with most metal being adsorbed onto the cell surface. Metal removal by D. pleiomorphus (strain ACOI 561), a commercially available ecotype, was also assessed for comparative purposes; a removal of 76.4 mg Cd g^?1 biomass was attained by 1 day for the same initial metal concentration. Assays for metal removal using thermally inactivated cells were also performed; the maximum removal extent observed was 47.1 mg Cd g^?1 biomass, at the initial concentration of 5 mg Cd L^?1. In experiments conducted at various pH values, the highest removal was achieved at pH 4.0. Both microalga strains proved their feasibility as biotechnological tools to remove Cd from aqueous solution.     

Efficiency of Mesocosm-Scale Constructed Wetland Systems for Treatment of Sanitary Wastewater Under Tropical Conditions

Subsurface-flow constructed wetlands technology (SSFW) has been used successfully for treating sanitary wastewater throughout North America and Europe. However, treatment wetland technologies have not been used extensively in the tropics. To advance tropical studies, a pilot-scale SSFW was constructed on the campus of the University of the Atlantic in Barranquilla, Colombia. The systems performance was monitored from January to July of 2009. The treatment system consisted of a 760-L septic tank followed by three mesocsom-scale subsurface-flow constructed wetlands in parallel arrangement. Clarified wastewater was batch loaded to each unit at a rate of 53 L/m²/day to affect a hydraulic retention time of approximately 3 days. One of the treatment units served as a non-planted control (gravel only), while the other two treatment units were planted with either Eriochloa aristata or Eleocharis mutata. The objective of this study was to evaluate the comparative efficacy of the treatment units (planted vs. unplanted), with respect to their abilities to augment treatment of septic tank effluent (sanitary wastewater). Monitored parameters included plant biomass, oxidation?Creduction potential, chemical oxygen demand (COD), temperature, dissolved oxygen, pH, ammonia?Cnitrogen (NH ₄ ⁺ ?CN) nitrate?C and nitrite?Cnitrogen (NO₃?CN, NO₂?CN), phosphates (PO ₄ ^? ), and coliform bacteria. Total biomass (dry matter) was 2.84 and 0.87 Kg/m² for E. aristata and E. mutata, respectively. Redox potential in the plant rizospheres averaged ?172 mV (±164.1) in E. aristata, 29 mV (±251.1) in E. mutata, and 32 mV (±210.5) in the unplanted control. COD removal was superior in planted vs. non-planted systems (>75% vs. 47%). Ammonia and total phosphorus removal averaged 69% and 85%, respectively, in planted systems versus 31% and 59% in the unplanted system. Removal of total and fecal coliforms averaged 96%. Results of this pilot study revealed that SSFW technology in the tropics can provide significant removal of organic matter, nutrients, and bacteria from clarified sanitary wastewater.     

Hydrogenated Vegetable Oil Industry Wastewater Treatment using UASB Reactor System with Recourse to Energy Recovery

The investigation was carried out on laboratory scale to assess the feasibility of upflow anaerobic sludge blanket reactor system as a pretreatment for hydrogenated vegetable oil industry wastewater with recourse to energy recovery. The reactor system operated at 35°C, resulted in COD removal efficiency in the range 98.9–80.1% at organic loading varying in the range 1.33–10 kgCOD/m³ day. The specific methane yield varied from 0.295–0.345 m³CH₄/kgCOD_r. Hydraulic retention time, substrate concentrations, pH, and temperature were also varied to study the influence of operating parameters on reactor performance. The methane content decreased with increase in substrate loading rate, and varied from 53–66.7% under varying operating conditions. Impulse loading studies in terms of hydraulic, organic, and pH though resulted in destabilization of the reactor; however, the reactor rapidly achieved stable performance after steady operation.     

Short-Term and Long-Term Effects of Tourmaline on Activated Sludge Viability and Performance

The study aimed to explore the short-term and long-term effects of tourmaline on activated sludge viability and biological nutrient removal performance. The experimental results indicated that ultrafine tourmaline particles (1 g/L) promoted sludge viability, the reaction rates, and relative enzyme activities in wastewater nitrogen removal. The difference between short-term and long-term effects of tourmaline was not significant. Although the NH₄ ⁺-N removal rate and NO₃ ^?-N formation rate in the presence of 1 g/L ultrafine tourmaline particles were increased to 13.8 and 6.8 mg/L?h, which were higher than those in the control (11.0 and 6.0 mg/L?h), short-term and long-term exposure to 1 g/L ultrafine tourmaline particles did not change the effluent concentrations of ammonia nitrogen, nitrite, and nitrate because the relative substrate concentrations were low in the influent. Denaturing gradient gel electrophoresis (DGGE) analysis results indicated that the microorganism community structures including the whole bacteria community, ammonia-oxidizing bacteria community, or the whole fungi community were not changed after the long-term exposure to 1 g/L ultrafine tourmaline particles, and Shannon diversity indices (H′) assays revealed that the diversities of community structures were not changed after the exposure to 1 g/L ultrafine tourmaline particles.     

Effects of Land Use Conversion from Native Forests to Exotic Plantations on Nitrogen and Phosphorus Retention in Catchments of Southern Chile

In six small catchments located at the Cordillera de la Costa in southern Chile (40° S), concentrations and fluxes of NO₃-N, NH₄-N, organic-N, total-N and total-P in bulk precipitation and runoff water were measured. The main objective of this study was to compare nitrogen and phosphorus retention of catchments with varying land cover of native forest and exotic plantations, in order to evaluate possible effects of land use change. Nitrate-N was the dominant fraction (>50%) of nitrogen loss, especially in the catchments dominated by exotic plantations. In the catchment with native forests, NO₃ ^? only contributed with 34% of the nitrogen loss and DON was the main output with 55%. Annual NO₃ ^? export was lower in the catchment with native forest compared to the catchments with exotic plantations where the streamflow output exceed the precipitation input. Average inputs of total-N were 2.6 kg ha^?1 year^?1 (DIN?=?1.4 kg ha^?1 year^?1, DON?=?1.2 kg ha^?1 year^?1) and outputs were 1.7 kg ha^?1 year^?1 (DIN?=?1.2 kg ha^?1 year^?1, DON?=?0.5 kg ha^?1 year^?1). Annual retention of total nitrogen fluctuated between 61% in a catchment dominated by native forests to 15% in catchments dominated by exotic plantations of Eucalyptus sp. Nitrogen retention was positively related with native forest coverage. The N retention capacity of the catchments could be both attributed to consequences of clear cutting practices and differences in vegetation cover.     

The relative contribution of nitrifiers to autotrophic nitrification across a pH-gradient in a vegetable cropped soil

Purpose

Microbial nitrification plays an important role in nitrogen cycling in ecosystems. Nitrification is performed by ammonia-oxidizing archaea (AOA), ammonia-oxidizing bacteria (AOB), and nitrite-oxidizing bacteria (NOB) including complete ammonia oxidizers. However, the relative importance of nitrifiers in autotrophic nitrification in relation to soil pH is still unclear.

Materials and methods

Combining DNA-based stable isotope probing (SIP) and molecular biological techniques, we investigated the abundance, structure, and activity of AOA, AOB, and NOB along a pH-gradient (3.97–7.04) in a vegetable cropped soil.

Results and discussion

We found that AOA abundance outnumbered AOB abundance and had a significantly negative relationship with soil pH. The abundances of NOB Nitrospira 16S rRNA, nxrB gene, and Nitrobacter nxrA gene were affected by soil pH. Incubation of soil with ¹³CO₂ and DNA-SIP analysis demonstrated that significant ¹³CO₂ assimilation by AOA rather than by AOB occurred in the acidic soils, whereas the labeled ¹³C level of AOA was much less in the neutral soil than in the acidic soils. There was no evidence of ¹³CO₂ assimilation by NOB except for Nitrobacter with NxrB gene at pH 3.97. Phylogenetic analysis of AOA amoA gene in the ¹³C- and ¹²C-labeled treatments showed that the active AOA mainly belonged to Nitrososphaera in the acidic soils.

Conclusions

These results suggested that the main performer of nitrification was AOA in the acidic soils, but both AOA and AOB participated in nitrification in the neutral soil with low nitrification activity. NOB Nitrospira and Nitrobacter did not grow in the soils with pH 4.82–7.04 and other populations of NOB were probably involved in nitrite oxidation in the vegetable cropped soil.