中国农业科学 ›› 2005, Vol. 38 ›› Issue (12): 2387-2394 .

• 作物遗传育种·种质资源 • 上一篇    下一篇

小麦TaDREB1基因的单核苷酸多态性分析

陈吉宝,景蕊莲,员海燕,卫波,昌小平   

  1. 中国农业科学院作物品种资源研究所
  • 收稿日期:2005-04-15 修回日期:2005-06-22 出版日期:2005-12-10 发布日期:2005-12-10
  • 通讯作者: 景蕊莲

Single Nucleotide Polymorphism of TaDREB1 Gene in Wheat Germplasm

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  1. 中国农业科学院作物品种资源研究所
  • Received:2005-04-15 Revised:2005-06-22 Online:2005-12-10 Published:2005-12-10

摘要: TaDREB1是一种转录因子,调控抗旱等抗逆相关基因的表达。以抗旱性不同的20份六倍体小麦和3份小麦的二倍体近缘种为材料,用直接测序法筛查TaDREB1基因DNA序列的单核苷酸多态性,在23份材料的38 038bp序列中发现了271个SNP和14个InDel,平均140 bp中有1个SNP,2 717 bp中有1个InDel。核苷酸多样性(Л)分析表明,小麦二倍体近缘种的Л值(0.02188)明显大于六倍体小麦的Л值(0.01029),说明该基因在二倍体种中的变异程度大于六倍体小麦,可能原因是六倍体小麦长期承受强大的人工选择压力。单倍型分析揭示了TaDREB1基因单核苷酸多态性与抗旱性表型的相关性,但同时也发现在个别单倍型里既有抗旱型材料又有对水分比较敏感的材料,揭示了抗旱性的复杂性,说明仅用TaDREB1基因的单核苷酸多态性还不能完全解释抗旱性复杂的表现型。

关键词: 小麦, TaDREB1基因, 单核苷酸多态性, 核苷酸多样性, 抗旱性, 单倍型

Abstract: TaDREB1 is a key transcription factor controlling abiotic-stress-responsive gene expression. Twenty hexaploid cultivars and three diploid species of wheat relative were used to detect single nucleotide polymorphisms (SNPs) in TaDREB1 gene based on sequencing. A total of 271 SNPs and 14 InDels (insertion and deletion) were identified from 38 038 bp nucleotide sequence of TaDREB1, on average of one SNP every 140 bp and one InDel every 2 717 bp. The nucleotide diversity value in the hexaploid (Л=0.01029) was lower than that in the diploid (Л=0.02188). This indicated that diversity of TaDREB1 gene in the diploid was larger than hexaploid due to stronger selection pressure loaded on the hexaploid than diploid. The result of haplotype analysis revealed that SNPs in TaDREB1 were correlated with drought-tolerant character. Two haplotypes including one drought-tolerant accession and one non-drought-tolerant accession were also found, respectively. This showed the complicacy of drought-tolerance and the complicated drought-tolerant phenotype can't be account for only based on the single nucleotide polymorphisms in TaDREB1 gene.

Key words: Wheat, TaDREB1 gene, Single nucleotide polymorphism, Nucleotide diversity, Drought torlerance, Haplotype